Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000185.1

Orthogroup ID

OG0031048

Physical Location & Seq

Genomic Coordinates Reverse (-)

679 .. 1989

Gene Structure 1311 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atgtgccgccttacttctggtagaggacaattcatgcccattatggaaaatgacaattctaatgtttcgcgagctgaagaaattaagcttcttgcaaatgaagcatttaaagcccataaatattctcaggctattgatctgtacacccaagcgattgaactaaacagcaagaatgccgtatactatgcgaatcgttcgtttgctcaccttaaactggaggaatatggaagtgccatacaagatgcttcaatggctattgaagttgatcctagatattcaaagggatactacaggcgaggtgcagcttctcttgctatggggaaattcaaagaggcactaaaagatttccagcaggttaaaaaaatctgtccaaatgatcctgatgctaccaagaaactgaaggaatgtgagaaggcagtgatgaagcttaaatttgctgaggcaatttctgtaccagagtctcaaaggcgtcccatagctgattctattaattatcgttctataggtactcttgtgttgctttccagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0016604 GO:0016607 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04010 map04010

Pfam Domains

Protein Families

Metallophos PPP5 TPR_1 TPR_11 TPR_16 TPR_8

Protein Analysis

176

Amino Acids

19.8

Weight (kDa)

9.15

Isoelectric Point (pI)

35.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_BSK1_C	PF25575	23 - 97	3.5e-09	Serine/threonine-protein kinase BSK1-like, TPR repeats
TPR_1	PF00515	94 - 126	5.6e-08	Tetratricopeptide repeat
TPR_2	PF07719	94 - 126	1.4e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0031048)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000185.1_g000001 Rmu_sc0007617.1_g000014

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	343
AccI	GTMKAC	1 cut(s)	180
AccII	CGCG	1 cut(s)	70
AciI	CCGC	1 cut(s)	7
AclWI	GGATC	2 cut(s)	260, 371
AcsI	RAATTY	2 cut(s)	323, 431
AcuI	CTGAAG	2 cut(s)	96, 419
AcyI	GRCGYC	1 cut(s)	469
AfaI	GTAC	3 cut(s)	143, 453, 508
AfiI	CCNNNNNNNGG	1 cut(s)	214
AgsI	TTSAA	5 cut(s)	158, 249, 260, 279, 328
AluBI	AGCT	5 cut(s)	74, 88, 305, 427, 479
AluI	AGCT	5 cut(s)	74, 88, 305, 427, 479
Alw26I	GTCTC	1 cut(s)	465
AlwI	GGATC	2 cut(s)	260, 371
ApeKI	GCWGC	1 cut(s)	302
ApoI	RAATTY	2 cut(s)	323, 431
AseI	ATTAAT	1 cut(s)	489
AsuHPI	GGTGA	1 cut(s)	197
BaeI	ACNNNNGTAYC	2 cut(s)	498, 531
BbvCI	CCTCAGC	1 cut(s)	438
BbvI	GCAGC	1 cut(s)	314
BceAI	ACGGC	1 cut(s)	161
BciVI	GTATCC	1 cut(s)	278
BcoDI	GTCTC	1 cut(s)	465
BfaI	CTAG	1 cut(s)	270
BfmI	CTRYAG	2 cut(s)	289, 501
BfuAI	ACCTGC	1 cut(s)	343
BfuI	GTATCC	1 cut(s)	278
BisI	GCNGC	2 cut(s)	7, 303
BlsI	GCNGC	2 cut(s)	8, 304
BmsI	GCATC	2 cut(s)	232, 373
BpmI	CTGGAG	1 cut(s)	236
Bpu10I	CCTNAGC	1 cut(s)	438
BsaHI	GRCGYC	1 cut(s)	469
Bsc4I	CCNNNNNNNGG	1 cut(s)	214
Bse1I	ACTGG	2 cut(s)	219, 525
BseLI	CCNNNNNNNGG	1 cut(s)	214
BseMII	CTCAG	2 cut(s)	140, 429
BseNI	ACTGG	2 cut(s)	219, 525
BseXI	GCAGC	1 cut(s)	314
BsgI	GTGCAG	1 cut(s)	321
Bsh1236I	CGCG	1 cut(s)	70
BslFI	GGGAC	1 cut(s)	456
BslI	CCNNNNNNNGG	1 cut(s)	214
BsmAI	GTCTC	1 cut(s)	465
BsmFI	GGGAC	1 cut(s)	456
BsmI	GAATGC	1 cut(s)	178
Bsp1407I	TGTACA	1 cut(s)	141
Bsp143I	GATC	3 cut(s)	136, 265, 376
Bsp68I	TCGCGA	1 cut(s)	70
BspACI	CCGC	1 cut(s)	7
BspCNI	CTCAG	2 cut(s)	139, 430
BspFNI	CGCG	1 cut(s)	70
BspMI	ACCTGC	1 cut(s)	343
BspPI	GGATC	2 cut(s)	260, 371
BsrGI	TGTACA	1 cut(s)	141
BsrI	ACTGG	2 cut(s)	219, 525
BssMI	GATC	3 cut(s)	136, 265, 376
BssNAI	GTATAC	1 cut(s)	181
BssNI	GRCGYC	1 cut(s)	469
Bst1107I	GTATAC	1 cut(s)	181
BstACI	GRCGYC	1 cut(s)	469
BstAUI	TGTACA	1 cut(s)	141
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	2 cut(s)	126, 438
BstFNI	CGCG	1 cut(s)	70
BstKTI	GATC	3 cut(s)	139, 268, 379
BstMAI	GTCTC	1 cut(s)	465
BstMBI	GATC	3 cut(s)	136, 265, 376
BstMWI	GCNNNNNNNGC	4 cut(s)	101, 110, 251, 311
BstSFI	CTRYAG	2 cut(s)	289, 501
BstUI	CGCG	1 cut(s)	70
BstV1I	GCAGC	1 cut(s)	314
BstZ17I	GTATAC	1 cut(s)	181
BsuI	GTATCC	1 cut(s)	278
BtsI	GCAGTG	1 cut(s)	423
BtsIMutI	CAGTG	1 cut(s)	423
BtuMI	TCGCGA	1 cut(s)	70
BveI	ACCTGC	1 cut(s)	343
Cac8I	GCNNGC	1 cut(s)	72
CseI	GACGC	1 cut(s)	458
Csp6I	GTAC	3 cut(s)	142, 452, 507
CviAII	CATG	1 cut(s)	34
CviJI	RGCY	8 cut(s)	74, 88, 113, 131, 254, 305, 427, 479
CviKI_1	RGCY	8 cut(s)	74, 88, 113, 131, 254, 305, 427, 479
CviQI	GTAC	3 cut(s)	142, 452, 507
DdeI	CTNAG	2 cut(s)	126, 438
DpnI	GATC	3 cut(s)	138, 267, 378
DpnII	GATC	3 cut(s)	136, 265, 376
DraI	TTTAAA	1 cut(s)	109
Eco57I	CTGAAG	2 cut(s)	96, 419
FaeI	CATG	1 cut(s)	37
FaqI	GGGAC	1 cut(s)	456
FatI	CATG	1 cut(s)	33
FblI	GTMKAC	1 cut(s)	180
Fnu4HI	GCNGC	2 cut(s)	7, 303
Fsp4HI	GCNGC	2 cut(s)	7, 303
FspBI	CTAG	1 cut(s)	270
GluI	GCNGC	2 cut(s)	7, 303
GsuI	CTGGAG	1 cut(s)	236
HgaI	GACGC	1 cut(s)	458
Hin1I	GRCGYC	1 cut(s)	469
Hin1II	CATG	1 cut(s)	37
HindIII	AAGCTT	2 cut(s)	86, 425
HinfI	GANTC	3 cut(s)	190, 458, 482
HphI	GGTGA	1 cut(s)	197
Hpy166II	GTNNAC	2 cut(s)	144, 181
Hpy188III	TCNNGA	2 cut(s)	69, 380
Hpy8I	GTNNAC	2 cut(s)	144, 181
HpyAV	CCTTC	2 cut(s)	394, 406
HpyCH4V	TGCA	2 cut(s)	95, 302
HpyF10VI	GCNNNNNNNGC	4 cut(s)	101, 110, 251, 311
HpyF3I	CTNAG	2 cut(s)	126, 438
Hsp92I	GRCGYC	1 cut(s)	469
Hsp92II	CATG	1 cut(s)	37
Kzo9I	GATC	3 cut(s)	136, 265, 376
LpnPI	CCDG	8 cut(s)	3, 113, 200, 277, 338, 362, 393, 468
Lsp1109I	GCAGC	1 cut(s)	314
LweI	GCATC	2 cut(s)	232, 373
MaeI	CTAG	1 cut(s)	270
MalI	GATC	3 cut(s)	138, 267, 378
MboI	GATC	3 cut(s)	136, 265, 376
MboII	GAAGA	1 cut(s)	89
MluCI	AATT	7 cut(s)	29, 55, 81, 323, 431, 444, 490
MlyI	GAGTC	1 cut(s)	467
MnlI	CCTC	5 cut(s)	17, 211, 290, 325, 433
MseI	TTAA	6 cut(s)	84, 108, 210, 357, 429, 489
Mva1269I	GAATGC	1 cut(s)	178
MvnI	CGCG	1 cut(s)	70
MwoI	GCNNNNNNNGC	4 cut(s)	101, 110, 251, 311
NdeII	GATC	3 cut(s)	136, 265, 376
NlaIII	CATG	1 cut(s)	37
NruI	TCGCGA	1 cut(s)	70
PctI	GAATGC	1 cut(s)	178
PfeI	GAWTC	2 cut(s)	190, 482
PkrI	GCNGC	2 cut(s)	8, 304
PleI	GAGTC	1 cut(s)	466
PpsI	GAGTC	1 cut(s)	466
PshBI	ATTAAT	1 cut(s)	489
RruI	TCGCGA	1 cut(s)	70
RsaI	GTAC	3 cut(s)	143, 453, 508
RsaNI	GTAC	3 cut(s)	142, 452, 507
SaqAI	TTAA	6 cut(s)	84, 108, 210, 357, 429, 489
SatI	GCNGC	2 cut(s)	7, 303
Sau3AI	GATC	3 cut(s)	136, 265, 376
SchI	GAGTC	1 cut(s)	467
SetI	ASST	9 cut(s)	76, 90, 210, 301, 307, 357, 429, 481, 508
SfaNI	GCATC	2 cut(s)	232, 373
SfcI	CTRYAG	2 cut(s)	289, 501
Sse9I	AATT	7 cut(s)	29, 55, 81, 323, 431, 444, 490
SsiI	CCGC	1 cut(s)	7
SspI	AATATT	1 cut(s)	122
SspMI	CTAG	1 cut(s)	270
TasI	AATT	7 cut(s)	29, 55, 81, 323, 431, 444, 490
TatI	WGTACW	1 cut(s)	141
TauI	GCSGC	1 cut(s)	9
TfiI	GAWTC	2 cut(s)	190, 482
Tru1I	TTAA	6 cut(s)	84, 108, 210, 357, 429, 489
Tru9I	TTAA	6 cut(s)	84, 108, 210, 357, 429, 489
TscAI	CASTG	1 cut(s)	423
TseI	GCWGC	1 cut(s)	302
TspDTI	ATGAA	3 cut(s)	22, 114, 437
TspRI	CASTG	1 cut(s)	423
VspI	ATTAAT	1 cut(s)	489
XapI	RAATTY	2 cut(s)	323, 431
XmiI	GTMKAC	1 cut(s)	180
XspI	CTAG	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.