Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007617.1

Orthogroup ID

OG0031048

Physical Location & Seq

Genomic Coordinates Forward (+)

61817 .. 66054

Gene Structure 4238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007617.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

atgtgccgccttacttctggtagaggacaattcatgcccattatggaaaatgacaattctaatgtttcgcgagctgaagaaattaagcttcttgcaaatgaagcatttaaagcccataaatattctcaggctattgatctgtacacccaagcgattgaactaaacagcaagaatgccgtatactatgcgaatcgttcgtttgctcaccttaaactggaggaatatggaagtgccatacaagatgcttcaatggctattgaagttgatcctagatattcaaagggatactacaggcgaggtgcagcttctcttgctatggggaaattcaaagaggcactaaaagatttccagcaggttaaaaaaatctgtccaaatgatcctgatgctaccaagaaactgaaggaatgtgagaaggcagtgatgaagcttaaatttgctgaggcaatttctgtaccagagtctcaaaggcgtcccatagctgattctattaattatcgttctataggaacgagtaccagttcatcatcagtgcccaccgaagttaccgtagcagttctggcaatagcagctggggtagcgatggttttgatgggaacagcagtgactgcagttgtggccacaatagtggtggtagtcatggtggttctgggggcacgttggtggcgtggcttccatgcaatatatcttgcaagggggaaccatgaaagcaaaagcatgaacaggatatatggttttgagggcgaggtccagtccaagttaagcgaaaaatttgtggaactatttgctgaagtgttttgttgtttaccgttggctcatgtaataaacggcaaggtgtttgtagttcatgggggtctttttagtgttgatggggtgaaactgagtgatattaaagcaattaatcggttttgtgaacctcctgaggaaggattgatgtgtgaattgctatggagtgatccacaacctgcacctggaagaggccctagcaagcgaggtgtaggtctttcttttggtggtgatgtgacaaaaagatttttgcaggacaacaatttagatttagttgtgcgctctcatgaagtaaaggatgagggatatgagattgagcatgatggtaaactcatcactgtattttctgccccaaattactgtgatcagatgggtaacaaaggcgcctttatccgttttgaagcaccagatttgaagccaaatatagtcactttttcagcagtgccgcatcctgatgtgaagccaatggcatatgcaaataacttcctccgactctttcagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0016604 GO:0016607 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04010 map04010

Pfam Domains

Protein Families

Metallophos PPP5 TPR_1 TPR_11 TPR_16 TPR_8

Protein Analysis

428

Amino Acids

47.31

Weight (kDa)

8.28

Isoelectric Point (pI)

33.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031048)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000185.1_g000001 Rmu_sc0007617.1_g000014

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	343, 970
AccB1I	GGYRCC	1 cut(s)	1166
AccI	GTMKAC	1 cut(s)	180
AccII	CGCG	1 cut(s)	70
AciI	CCGC	2 cut(s)	7, 1229
AclWI	GGATC	3 cut(s)	260, 371, 947
AcoI	YGGCCR	1 cut(s)	615
AcsI	RAATTY	3 cut(s)	323, 431, 767
AcuI	CTGAAG	3 cut(s)	96, 419, 807
AcyI	GRCGYC	2 cut(s)	469, 1167
AfaI	GTAC	3 cut(s)	143, 453, 514
AfiI	CCNNNNNNNGG	4 cut(s)	214, 923, 968, 974
AgsI	TTSAA	7 cut(s)	158, 249, 260, 279, 328, 1184, 1198
AjnI	CCWGG	1 cut(s)	967
AleI	CACNNNNGTG	2 cut(s)	623, 658
AluBI	AGCT	6 cut(s)	74, 88, 305, 427, 479, 569
AluI	AGCT	6 cut(s)	74, 88, 305, 427, 479, 569
Alw26I	GTCTC	1 cut(s)	465
AlwI	GGATC	3 cut(s)	260, 371, 947
AlwNI	CAGNNNCTG	1 cut(s)	605
AoxI	GGCC	2 cut(s)	615, 976
ApeKI	GCWGC	2 cut(s)	302, 566
ApoI	RAATTY	3 cut(s)	323, 431, 767
AseI	ATTAAT	2 cut(s)	489, 897
AspLEI	GCGC	2 cut(s)	1065, 1169
AspS9I	GGNCC	2 cut(s)	745, 977
AsuHPI	GGTGA	3 cut(s)	197, 883, 1025
AvaII	GGWCC	1 cut(s)	745
AxyI	CCTNAGG	1 cut(s)	918
BaeGI	GKGCMC	2 cut(s)	534, 655
BalI	TGGCCA	1 cut(s)	617
BanI	GGYRCC	1 cut(s)	1166
BbvCI	CCTCAGC	1 cut(s)	438
BbvI	GCAGC	2 cut(s)	314, 578
BccI	CCATC	5 cut(s)	574, 583, 860, 1100, 1147
BceAI	ACGGC	2 cut(s)	161, 841
BciT130I	CCWGG	1 cut(s)	969
BciVI	GTATCC	1 cut(s)	278
BclI	TGATCA	1 cut(s)	1147
BcoDI	GTCTC	1 cut(s)	465
BfaI	CTAG	2 cut(s)	270, 981
BfmI	CTRYAG	3 cut(s)	289, 501, 606
BfoI	RGCGCY	1 cut(s)	1170
BfuAI	ACCTGC	2 cut(s)	343, 970
BfuI	GTATCC	1 cut(s)	278
BisI	GCNGC	4 cut(s)	7, 303, 567, 1229
BlsI	GCNGC	4 cut(s)	8, 304, 568, 1230
Bme1390I	CCNGG	1 cut(s)	969
Bme18I	GGWCC	1 cut(s)	745
BmgT120I	GGNCC	2 cut(s)	745, 977
BmiI	GGNNCC	2 cut(s)	698, 1168
BmrFI	CCNGG	1 cut(s)	969
BmsI	GCATC	3 cut(s)	232, 373, 1240
BpmI	CTGGAG	1 cut(s)	236
Bpu10I	CCTNAGC	1 cut(s)	438
BsaHI	GRCGYC	2 cut(s)	469, 1167
Bsc4I	CCNNNNNNNGG	4 cut(s)	214, 923, 968, 974
Bse1I	ACTGG	3 cut(s)	219, 516, 748
Bse21I	CCTNAGG	1 cut(s)	918
BseBI	CCWGG	1 cut(s)	969
BseGI	GGATG	2 cut(s)	1087, 1231
BseLI	CCNNNNNNNGG	4 cut(s)	214, 923, 968, 974
BseMII	CTCAG	4 cut(s)	140, 429, 869, 909
BseNI	ACTGG	3 cut(s)	219, 516, 748
BseSI	GKGCMC	2 cut(s)	534, 655
BseXI	GCAGC	2 cut(s)	314, 578
BseYI	CCCAGC	1 cut(s)	569
BsgI	GTGCAG	2 cut(s)	321, 948
Bsh1236I	CGCG	1 cut(s)	70
BshFI	GGCC	2 cut(s)	617, 978
BshNI	GGYRCC	1 cut(s)	1166
BslFI	GGGAC	1 cut(s)	456
BslI	CCNNNNNNNGG	4 cut(s)	214, 923, 968, 974
BsmAI	GTCTC	1 cut(s)	465
BsmFI	GGGAC	1 cut(s)	456
BsmI	GAATGC	1 cut(s)	178
BsnI	GGCC	2 cut(s)	617, 978
Bsp1286I	GDGCHC	2 cut(s)	534, 655
Bsp1407I	TGTACA	1 cut(s)	141
Bsp143I	GATC	5 cut(s)	136, 265, 376, 952, 1147
Bsp68I	TCGCGA	1 cut(s)	70
BspACI	CCGC	2 cut(s)	7, 1229
BspANI	GGCC	2 cut(s)	617, 978
BspCNI	CTCAG	4 cut(s)	139, 430, 870, 910
BspFNI	CGCG	1 cut(s)	70
BspHI	TCATGA	1 cut(s)	1069
BspLI	GGNNCC	2 cut(s)	698, 1168
BspMAI	CTGCAG	1 cut(s)	610
BspMI	ACCTGC	2 cut(s)	343, 970
BspPI	GGATC	3 cut(s)	260, 371, 947
BspT107I	GGYRCC	1 cut(s)	1166
BsrGI	TGTACA	1 cut(s)	141
BsrI	ACTGG	3 cut(s)	219, 516, 748
BssMI	GATC	5 cut(s)	136, 265, 376, 952, 1147
BssNAI	GTATAC	1 cut(s)	181
BssNI	GRCGYC	2 cut(s)	469, 1167
Bst1107I	GTATAC	1 cut(s)	181
Bst2UI	CCWGG	1 cut(s)	969
Bst4CI	ACNGT	4 cut(s)	547, 807, 1123, 1145
Bst6I	CTCTTC	1 cut(s)	967
BstACI	GRCGYC	2 cut(s)	469, 1167
BstAPI	GCANNNNNTGC	1 cut(s)	605
BstAUI	TGTACA	1 cut(s)	141
BstC8I	GCNNGC	2 cut(s)	72, 986
BstDEI	CTNAG	4 cut(s)	126, 438, 878, 918
BstENI	CCTNNNNNAGG	2 cut(s)	921, 972
BstF5I	GGATG	2 cut(s)	1087, 1231
BstFNI	CGCG	1 cut(s)	70
BstH2I	RGCGCY	1 cut(s)	1170
BstHHI	GCGC	2 cut(s)	1065, 1169
BstKTI	GATC	5 cut(s)	139, 268, 379, 955, 1150
BstMAI	GTCTC	1 cut(s)	465
BstMBI	GATC	5 cut(s)	136, 265, 376, 952, 1147
BstMWI	GCNNNNNNNGC	9 cut(s)	101, 110, 251, 311, 557, 566, 575, 605, 614
BstNI	CCWGG	1 cut(s)	969
BstSCI	CCNGG	1 cut(s)	967
BstSFI	CTRYAG	3 cut(s)	289, 501, 606
BstSLI	GKGCMC	2 cut(s)	534, 655
BstUI	CGCG	1 cut(s)	70
BstV1I	GCAGC	2 cut(s)	314, 578
BstXI	CCANNNNNNTGG	1 cut(s)	625
BstZ17I	GTATAC	1 cut(s)	181
Bsu36I	CCTNAGG	1 cut(s)	918
BsuI	GTATCC	1 cut(s)	278
BsuRI	GGCC	2 cut(s)	617, 978
BtgZI	GCGATG	1 cut(s)	593
BtsCI	GGATG	2 cut(s)	1087, 1231
BtsI	GCAGTG	3 cut(s)	423, 606, 1230
BtsIMutI	CAGTG	5 cut(s)	423, 534, 606, 1119, 1230
BtuMI	TCGCGA	1 cut(s)	70
BveI	ACCTGC	2 cut(s)	343, 970
Cac8I	GCNNGC	2 cut(s)	72, 986
CaiI	CAGNNNCTG	1 cut(s)	605
CciI	TCATGA	1 cut(s)	1069
CfoI	GCGC	2 cut(s)	1065, 1169
Cfr13I	GGNCC	2 cut(s)	745, 977
CseI	GACGC	1 cut(s)	458
Csp6I	GTAC	3 cut(s)	142, 452, 513
CspCI	CAANNNNNGTGG	2 cut(s)	609, 644
CviAII	CATG	9 cut(s)	34, 637, 674, 701, 715, 815, 845, 1070, 1103
CviQI	GTAC	3 cut(s)	142, 452, 513
DdeI	CTNAG	4 cut(s)	126, 438, 878, 918
DinI	GGCGCC	1 cut(s)	1168
DpnI	GATC	5 cut(s)	138, 267, 378, 954, 1149
DpnII	GATC	5 cut(s)	136, 265, 376, 952, 1147
DraI	TTTAAA	1 cut(s)	109
EaeI	YGGCCR	1 cut(s)	615
Eam1104I	CTCTTC	1 cut(s)	967
EarI	CTCTTC	1 cut(s)	967
Eco47I	GGWCC	1 cut(s)	745
Eco57I	CTGAAG	3 cut(s)	96, 419, 807
Eco81I	CCTNAGG	1 cut(s)	918
EcoNI	CCTNNNNNAGG	2 cut(s)	921, 972
EcoO109I	RGGNCCY	1 cut(s)	977
EcoRII	CCWGG	1 cut(s)	967
EgeI	GGCGCC	1 cut(s)	1168
EheI	GGCGCC	1 cut(s)	1168
FaeI	CATG	9 cut(s)	37, 640, 677, 704, 718, 818, 848, 1073, 1106
FaqI	GGGAC	1 cut(s)	456
FatI	CATG	9 cut(s)	33, 636, 673, 700, 714, 814, 844, 1069, 1102
FauNDI	CATATG	1 cut(s)	1255
FbaI	TGATCA	1 cut(s)	1147
FblI	GTMKAC	1 cut(s)	180
Fnu4HI	GCNGC	4 cut(s)	7, 303, 567, 1229
FokI	GGATG	2 cut(s)	1094, 1218
Fsp4HI	GCNGC	4 cut(s)	7, 303, 567, 1229
FspBI	CTAG	2 cut(s)	270, 981
GlaI	GCGC	2 cut(s)	1064, 1168
GluI	GCNGC	4 cut(s)	7, 303, 567, 1229
GsaI	CCCAGC	1 cut(s)	573
GsuI	CTGGAG	1 cut(s)	236
HaeII	RGCGCY	1 cut(s)	1170
HaeIII	GGCC	2 cut(s)	617, 978
HgaI	GACGC	1 cut(s)	458
HhaI	GCGC	2 cut(s)	1065, 1169
Hin1I	GRCGYC	2 cut(s)	469, 1167
Hin1II	CATG	9 cut(s)	37, 640, 677, 704, 718, 818, 848, 1073, 1106
Hin6I	GCGC	2 cut(s)	1063, 1167
HinP1I	GCGC	2 cut(s)	1063, 1167
HindIII	AAGCTT	2 cut(s)	86, 425
HinfI	GANTC	4 cut(s)	190, 458, 482, 1275
HphI	GGTGA	3 cut(s)	197, 883, 1025
Hpy166II	GTNNAC	5 cut(s)	144, 181, 803, 911, 1112
Hpy188I	TCNGA	2 cut(s)	1152, 1274
Hpy188III	TCNNGA	5 cut(s)	69, 380, 917, 1070, 1235
Hpy8I	GTNNAC	5 cut(s)	144, 181, 803, 911, 1112
HpyAV	CCTTC	3 cut(s)	394, 406, 917
HpyCH4III	ACNGT	4 cut(s)	547, 807, 1123, 1145
HpyCH4IV	ACGT	1 cut(s)	655
HpyCH4V	TGCA	8 cut(s)	95, 302, 608, 677, 689, 965, 1036, 1259
HpyF10VI	GCNNNNNNNGC	9 cut(s)	101, 110, 251, 311, 557, 566, 575, 605, 614
HpyF3I	CTNAG	4 cut(s)	126, 438, 878, 918
HpySE526I	ACGT	1 cut(s)	655
Hsp92I	GRCGYC	2 cut(s)	469, 1167
Hsp92II	CATG	9 cut(s)	37, 640, 677, 704, 718, 818, 848, 1073, 1106
HspAI	GCGC	2 cut(s)	1063, 1167
KasI	GGCGCC	1 cut(s)	1166
Ksp22I	TGATCA	1 cut(s)	1147
Kzo9I	GATC	5 cut(s)	136, 265, 376, 952, 1147
Lsp1109I	GCAGC	2 cut(s)	314, 578
LweI	GCATC	3 cut(s)	232, 373, 1240
MaeI	CTAG	2 cut(s)	270, 981
MaeII	ACGT	1 cut(s)	655
MaeIII	GTNAC	5 cut(s)	541, 601, 1018, 1157, 1210
MalI	GATC	5 cut(s)	138, 267, 378, 954, 1149
MboI	GATC	5 cut(s)	136, 265, 376, 952, 1147
MboII	GAAGA	2 cut(s)	89, 984
MhlI	GDGCHC	2 cut(s)	534, 655
MlsI	TGGCCA	1 cut(s)	617
MluNI	TGGCCA	1 cut(s)	617
Mly113I	GGCGCC	1 cut(s)	1167
MlyI	GAGTC	2 cut(s)	467, 1269
Mox20I	TGGCCA	1 cut(s)	617
MscI	TGGCCA	1 cut(s)	617
MseI	TTAA	9 cut(s)	84, 108, 210, 357, 429, 489, 758, 888, 897
MslI	CAYNNNNRTG	3 cut(s)	623, 658, 1236
Msp20I	TGGCCA	1 cut(s)	617
MspA1I	CMGCKG	1 cut(s)	569
MspR9I	CCNGG	1 cut(s)	969
Mva1269I	GAATGC	1 cut(s)	178
MvaI	CCWGG	1 cut(s)	969
MvnI	CGCG	1 cut(s)	70
MwoI	GCNNNNNNNGC	9 cut(s)	101, 110, 251, 311, 557, 566, 575, 605, 614
NarI	GGCGCC	1 cut(s)	1167
NdeI	CATATG	1 cut(s)	1255
NdeII	GATC	5 cut(s)	136, 265, 376, 952, 1147
NlaIII	CATG	9 cut(s)	37, 640, 677, 704, 718, 818, 848, 1073, 1106
NlaIV	GGNNCC	2 cut(s)	698, 1168
NmuCI	GTSAC	3 cut(s)	601, 1018, 1210
NruI	TCGCGA	1 cut(s)	70
OliI	CACNNNNGTG	2 cut(s)	623, 658
PagI	TCATGA	1 cut(s)	1069
PcsI	WCGNNNNNNNCGW	1 cut(s)	661
PctI	GAATGC	1 cut(s)	178
PfeI	GAWTC	2 cut(s)	190, 482
PkrI	GCNGC	4 cut(s)	8, 304, 568, 1230
PleI	GAGTC	2 cut(s)	466, 1269
PluTI	GGCGCC	1 cut(s)	1170
PpsI	GAGTC	2 cut(s)	466, 1269
PshBI	ATTAAT	2 cut(s)	489, 897
Psp6I	CCWGG	1 cut(s)	967
PspFI	CCCAGC	1 cut(s)	569
PspGI	CCWGG	1 cut(s)	967
PspN4I	GGNNCC	2 cut(s)	698, 1168
PspPI	GGNCC	2 cut(s)	745, 977
PstI	CTGCAG	1 cut(s)	610
PstNI	CAGNNNCTG	1 cut(s)	605
PvuII	CAGCTG	1 cut(s)	569
RruI	TCGCGA	1 cut(s)	70
RsaI	GTAC	3 cut(s)	143, 453, 514
RsaNI	GTAC	3 cut(s)	142, 452, 513
RseI	CAYNNNNRTG	3 cut(s)	623, 658, 1236
SaqAI	TTAA	9 cut(s)	84, 108, 210, 357, 429, 489, 758, 888, 897
SatI	GCNGC	4 cut(s)	7, 303, 567, 1229
Sau3AI	GATC	5 cut(s)	136, 265, 376, 952, 1147
Sau96I	GGNCC	2 cut(s)	745, 977
SchI	GAGTC	2 cut(s)	467, 1269
ScrFI	CCNGG	1 cut(s)	969
SduI	GDGCHC	2 cut(s)	534, 655
SfaNI	GCATC	3 cut(s)	232, 373, 1240
SfcI	CTRYAG	3 cut(s)	289, 501, 606
SfoI	GGCGCC	1 cut(s)	1168
SinI	GGWCC	1 cut(s)	745
SmiMI	CAYNNNNRTG	3 cut(s)	623, 658, 1236
SsiI	CCGC	2 cut(s)	7, 1229
SspDI	GGCGCC	1 cut(s)	1166
SspI	AATATT	1 cut(s)	122
SspMI	CTAG	2 cut(s)	270, 981
StyD4I	CCNGG	1 cut(s)	967
TaaI	ACNGT	4 cut(s)	547, 807, 1123, 1145
TaiI	ACGT	1 cut(s)	658
TatI	WGTACW	1 cut(s)	141
TauI	GCSGC	2 cut(s)	9, 1231
TfiI	GAWTC	2 cut(s)	190, 482
Tru1I	TTAA	9 cut(s)	84, 108, 210, 357, 429, 489, 758, 888, 897
Tru9I	TTAA	9 cut(s)	84, 108, 210, 357, 429, 489, 758, 888, 897
TscAI	CASTG	5 cut(s)	423, 534, 606, 1126, 1230
TseFI	GTSAC	3 cut(s)	601, 1018, 1210
TseI	GCWGC	2 cut(s)	302, 566
Tsp45I	GTSAC	3 cut(s)	601, 1018, 1210
TspDTI	ATGAA	8 cut(s)	22, 114, 437, 510, 717, 731, 833, 1086
TspGWI	ACGGA	1 cut(s)	1166
TspRI	CASTG	5 cut(s)	423, 534, 606, 1126, 1230
VpaK11BI	GGWCC	1 cut(s)	745
VspI	ATTAAT	2 cut(s)	489, 897
XagI	CCTNNNNNAGG	2 cut(s)	921, 972
XapI	RAATTY	3 cut(s)	323, 431, 767
XcmI	CCANNNNNNNNNTGG	1 cut(s)	625
XmiI	GTMKAC	1 cut(s)	180
XspI	CTAG	2 cut(s)	270, 981

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.