Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000366.1

Orthogroup ID

OG0031065

Physical Location & Seq

Genomic Coordinates Forward (+)

34671 .. 38983

Gene Structure 4313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000366.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

atgcaaaaatccaaactgtactcgaggtatcggttcggtcttagtttcttcggaccggcccgacccgagtccagagtaaatttacaaaagcgcgccttcattgccctgcccgcgaaacccaaaagtccatttcaaaatcaaataagcattattagggccccgctcaatcacagccatccactacaaccagtcaaacatccaagtctccacgtcatcgatccgcacctgtctgtctccaccaatcaaatcccaccccgctctccgaaaccttgtcagctagcttctcctcgaccggtttcttcccggccggcttcttctctgccattgttgagggtttcagagctttctaggaagctccgagcggagaagaagcttccggcttcgaaggacgccgccgagaagaagaagaagaagaagaagaagcgtccaaagaagagcgtggagacctacaagacctacatctttaaggccatggggattatgaacagtttcatcaatgacatatttgagaagctggctgccgactcttccaagcttgcgaggtacaataagcagatgacgatcacttcgagggagattcaaactgcggtgaggttggtgcttcctggtctccggaggtggccggaaaaggtcgccggatttagtggcagagccgcgccgacttccgccaatggtgtcggggccgggctgctcctcttcatctcatcaagcttaacaactttcttaactagcataaactcaaggcgatctccccagttcaagaatcactcaaaacgaagctctacagctcgagatatccggatcgaaagttccgttcgatctaagtcggggttgacttgcagccgccgccacagaccactccaccgttcaaggctaccacaggaagctgcgcaaggaagaggcgaaggcgtgggacatgttctggggtcaattgatgtcctgtggagcgagaaccagcttggagaaggaatgctctgttttggttgctggtttcggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko05034 ko05203 ko05322 map05034 map05203 map05322

Pfam Domains

Protein Families

Histone

Protein Analysis

332

Amino Acids

37.14

Weight (kDa)

11.25

Isoelectric Point (pI)

59.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031065)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000366.1_g000004 Rmu_sc0000366.1_g000026

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	891
AccBSI	CCGCTC	3 cut(s)	163, 258, 362
AccII	CGCG	3 cut(s)	93, 113, 656
AccIII	TCCGGA	2 cut(s)	612, 798
AclWI	GGATC	2 cut(s)	212, 809
AcoI	YGGCCR	2 cut(s)	305, 620
AcsI	RAATTY	1 cut(s)	79
AcyI	GRCGYC	1 cut(s)	390
AfaI	GTAC	2 cut(s)	20, 545
AflIII	ACRYGT	1 cut(s)	916
AgeI	ACCGGT	1 cut(s)	292
AgsI	TTSAA	4 cut(s)	134, 581, 760, 870
AjiI	CACGTC	1 cut(s)	211
AjnI	CCWGG	1 cut(s)	604
AloI	GAACNNNNNNTCC	2 cut(s)	793, 825
Alw26I	GTCTC	4 cut(s)	209, 238, 437, 614
AlwI	GGATC	2 cut(s)	212, 809
Ama87I	CYCGRG	3 cut(s)	22, 65, 789
Aor13HI	TCCGGA	2 cut(s)	612, 798
AoxI	GGCC	6 cut(s)	57, 156, 305, 468, 620, 681
ApaI	GGGCCC	1 cut(s)	160
ApeKI	GCWGC	4 cut(s)	518, 688, 840, 887
ApoI	RAATTY	1 cut(s)	79
ArsI	GACNNNNNNTTYG	2 cut(s)	550, 582
AsiGI	ACCGGT	1 cut(s)	292
Asp700I	GAANNNNTTC	1 cut(s)	488
AspLEI	GCGC	4 cut(s)	93, 95, 658, 892
AspS9I	GGNCC	5 cut(s)	53, 58, 156, 157, 681
AsuC2I	CCSGG	2 cut(s)	304, 685
AsuHPI	GGTGA	1 cut(s)	601
AsuII	TTCGAA	1 cut(s)	383
AsuNHI	GCTAGC	1 cut(s)	277
AvaI	CYCGRG	3 cut(s)	22, 65, 789
AvaII	GGWCC	1 cut(s)	53
BaeGI	GKGCMC	1 cut(s)	160
BanII	GRGCYC	1 cut(s)	160
BbvI	GCAGC	4 cut(s)	505, 675, 852, 874
BccI	CCATC	1 cut(s)	183
BciT130I	CCWGG	1 cut(s)	606
BcnI	CCSGG	2 cut(s)	304, 685
BcoDI	GTCTC	4 cut(s)	209, 238, 437, 614
BfaI	CTAG	3 cut(s)	278, 348, 729
BfmI	CTRYAG	1 cut(s)	783
BisI	GCNGC	8 cut(s)	393, 519, 654, 689, 841, 844, 847, 888
BlsI	GCNGC	8 cut(s)	394, 520, 655, 690, 842, 845, 848, 889
Bme1390I	CCNGG	3 cut(s)	304, 606, 685
Bme18I	GGWCC	1 cut(s)	53
BmeT110I	CYCGRG	3 cut(s)	22, 65, 789
BmgBI	CACGTC	1 cut(s)	211
BmgT120I	GGNCC	5 cut(s)	53, 58, 156, 157, 681
BmiI	GGNNCC	3 cut(s)	158, 159, 682
BmrFI	CCNGG	3 cut(s)	304, 606, 685
BmrI	ACTGGG	1 cut(s)	748
BmtI	GCTAGC	1 cut(s)	281
BmuI	ACTGGG	1 cut(s)	748
BoxI	GACNNNNGTC	1 cut(s)	67
Bpu14I	TTCGAA	1 cut(s)	383
BpuEI	CTTGAG	1 cut(s)	724
BpuMI	CCSGG	2 cut(s)	304, 685
Bsa29I	ATCGAT	1 cut(s)	216
BsaBI	GATNNNNATC	1 cut(s)	560
BsaHI	GRCGYC	1 cut(s)	390
BsaI	GGTCTC	2 cut(s)	437, 614
BsaJI	CCNNGG	1 cut(s)	471
BsaWI	WCCGGW	3 cut(s)	292, 612, 798
Bse118I	RCCGGY	3 cut(s)	55, 292, 307
Bse1I	ACTGG	2 cut(s)	188, 754
Bse3DI	GCAATG	1 cut(s)	99
Bse8I	GATNNNNATC	1 cut(s)	560
BseAI	TCCGGA	2 cut(s)	612, 798
BseBI	CCWGG	1 cut(s)	606
BseCI	ATCGAT	1 cut(s)	216
BseDI	CCNNGG	1 cut(s)	471
BseGI	GGATG	2 cut(s)	175, 196
BseJI	GATNNNNATC	1 cut(s)	560
BseMI	GCAATG	1 cut(s)	99
BseNI	ACTGG	2 cut(s)	188, 754
BsePI	GCGCGC	1 cut(s)	91
BseRI	GAGGAG	2 cut(s)	276, 683
BseSI	GKGCMC	1 cut(s)	160
BseX3I	CGGCCG	1 cut(s)	305
BseXI	GCAGC	4 cut(s)	505, 675, 852, 874
Bsh1236I	CGCG	3 cut(s)	93, 113, 656
Bsh1285I	CGRYCG	2 cut(s)	293, 308
BshFI	GGCC	6 cut(s)	59, 158, 307, 470, 622, 683
BshTI	ACCGGT	1 cut(s)	292
BshVI	ATCGAT	1 cut(s)	216
BsiEI	CGRYCG	2 cut(s)	293, 308
BsiHKCI	CYCGRG	3 cut(s)	22, 65, 789
BslFI	GGGAC	1 cut(s)	927
BsmAI	GTCTC	4 cut(s)	209, 238, 437, 614
BsmFI	GGGAC	1 cut(s)	927
BsmI	GAATGC	1 cut(s)	975
BsnI	GGCC	6 cut(s)	59, 158, 307, 470, 622, 683
Bso31I	GGTCTC	2 cut(s)	437, 614
BsoBI	CYCGRG	3 cut(s)	22, 65, 789
Bsp119I	TTCGAA	1 cut(s)	383
Bsp120I	GGGCCC	1 cut(s)	156
Bsp1286I	GDGCHC	1 cut(s)	160
Bsp13I	TCCGGA	2 cut(s)	612, 798
Bsp143I	GATC	5 cut(s)	217, 561, 746, 801, 818
Bsp19I	CCATGG	1 cut(s)	471
BspANI	GGCC	6 cut(s)	59, 158, 307, 470, 622, 683
BspDI	ATCGAT	1 cut(s)	216
BspEI	TCCGGA	2 cut(s)	612, 798
BspFNI	CGCG	3 cut(s)	93, 113, 656
BspLI	GGNNCC	3 cut(s)	158, 159, 682
BspOI	GCTAGC	1 cut(s)	281
BspPI	GGATC	2 cut(s)	212, 809
BspQI	GCTCTTC	1 cut(s)	428
BspT104I	TTCGAA	1 cut(s)	383
BspTNI	GGTCTC	2 cut(s)	437, 614
BsrBI	CCGCTC	3 cut(s)	163, 258, 362
BsrDI	GCAATG	1 cut(s)	99
BsrFI	RCCGGY	3 cut(s)	55, 292, 307
BsrI	ACTGG	2 cut(s)	188, 754
BssAI	RCCGGY	3 cut(s)	55, 292, 307
BssECI	CCNNGG	1 cut(s)	471
BssHII	GCGCGC	1 cut(s)	91
BssMI	GATC	5 cut(s)	217, 561, 746, 801, 818
BssNI	GRCGYC	1 cut(s)	390
BssT1I	CCWWGG	1 cut(s)	471
Bst2UI	CCWGG	1 cut(s)	606
Bst4CI	ACNGT	3 cut(s)	18, 488, 866
Bst6I	CTCTTC	4 cut(s)	428, 532, 701, 892
BstACI	GRCGYC	1 cut(s)	390
BstBI	TTCGAA	1 cut(s)	383
BstC8I	GCNNGC	6 cut(s)	93, 111, 279, 309, 516, 537
BstDEI	CTNAG	2 cut(s)	41, 822
BstDSI	CCRYGG	1 cut(s)	471
BstF5I	GGATG	2 cut(s)	175, 196
BstFNI	CGCG	3 cut(s)	93, 113, 656
BstHHI	GCGC	4 cut(s)	93, 95, 658, 892
BstKTI	GATC	5 cut(s)	220, 564, 749, 804, 821
BstMAI	GTCTC	4 cut(s)	209, 238, 437, 614
BstMBI	GATC	5 cut(s)	217, 561, 746, 801, 818
BstMCI	CGRYCG	2 cut(s)	293, 308
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 110, 846
BstNI	CCWGG	1 cut(s)	606
BstNSI	RCATGY	1 cut(s)	920
BstPAI	GACNNNNGTC	1 cut(s)	67
BstSCI	CCNGG	3 cut(s)	302, 604, 683
BstSFI	CTRYAG	1 cut(s)	783
BstSLI	GKGCMC	1 cut(s)	160
BstUI	CGCG	3 cut(s)	93, 113, 656
BstV1I	GCAGC	4 cut(s)	505, 675, 852, 874
BstZI	CGGCCG	1 cut(s)	305
Bsu15I	ATCGAT	1 cut(s)	216
BsuRI	GGCC	6 cut(s)	59, 158, 307, 470, 622, 683
BsuTUI	ATCGAT	1 cut(s)	216
BtgI	CCRYGG	1 cut(s)	471
BtrI	CACGTC	1 cut(s)	211
BtsCI	GGATG	2 cut(s)	175, 196
Cac8I	GCNNGC	6 cut(s)	93, 111, 279, 309, 516, 537
CfoI	GCGC	4 cut(s)	93, 95, 658, 892
Cfr10I	RCCGGY	3 cut(s)	55, 292, 307
Cfr13I	GGNCC	5 cut(s)	53, 58, 156, 157, 681
ClaI	ATCGAT	1 cut(s)	216
CpoI	CGGWCCG	1 cut(s)	53
CseI	GACGC	2 cut(s)	398, 413
Csp6I	GTAC	2 cut(s)	19, 544
CspAI	ACCGGT	1 cut(s)	292
CspI	CGGWCCG	1 cut(s)	53
CviAII	CATG	2 cut(s)	472, 917
CviQI	GTAC	2 cut(s)	19, 544
DdeI	CTNAG	2 cut(s)	41, 822
DpnI	GATC	5 cut(s)	219, 563, 748, 803, 820
DpnII	GATC	5 cut(s)	217, 561, 746, 801, 818
EaeI	YGGCCR	2 cut(s)	305, 620
EagI	CGGCCG	1 cut(s)	305
Eam1104I	CTCTTC	4 cut(s)	428, 532, 701, 892
EarI	CTCTTC	4 cut(s)	428, 532, 701, 892
EciI	GGCGGA	1 cut(s)	655
EclXI	CGGCCG	1 cut(s)	305
Eco130I	CCWWGG	1 cut(s)	471
Eco24I	GRGCYC	1 cut(s)	160
Eco31I	GGTCTC	2 cut(s)	437, 614
Eco32I	GATATC	1 cut(s)	796
Eco47I	GGWCC	1 cut(s)	53
Eco52I	CGGCCG	1 cut(s)	305
Eco88I	CYCGRG	3 cut(s)	22, 65, 789
EcoO109I	RGGNCCY	2 cut(s)	156, 157
EcoRII	CCWGG	1 cut(s)	604
EcoRV	GATATC	1 cut(s)	796
EcoT14I	CCWWGG	1 cut(s)	471
EcoT38I	GRGCYC	1 cut(s)	160
ErhI	CCWWGG	1 cut(s)	471
FaeI	CATG	2 cut(s)	475, 920
FaiI	YATR	5 cut(s)	473, 482, 503, 734, 918
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FaqI	GGGAC	1 cut(s)	927
FatI	CATG	2 cut(s)	471, 916
FauI	CCCGC	3 cut(s)	118, 168, 263
Fnu4HI	GCNGC	8 cut(s)	393, 519, 654, 689, 841, 844, 847, 888
FokI	GGATG	2 cut(s)	162, 183
FriOI	GRGCYC	1 cut(s)	160
Fsp4HI	GCNGC	8 cut(s)	393, 519, 654, 689, 841, 844, 847, 888
FspBI	CTAG	3 cut(s)	278, 348, 729
FspI	TGCGCA	1 cut(s)	891
GlaI	GCGC	4 cut(s)	92, 94, 657, 891
GluI	GCNGC	8 cut(s)	393, 519, 654, 689, 841, 844, 847, 888
HaeIII	GGCC	6 cut(s)	59, 158, 307, 470, 622, 683
HgaI	GACGC	2 cut(s)	398, 413
HhaI	GCGC	4 cut(s)	93, 95, 658, 892
Hin1I	GRCGYC	1 cut(s)	390
Hin1II	CATG	2 cut(s)	475, 920
Hin6I	GCGC	4 cut(s)	91, 93, 656, 890
HinP1I	GCGC	4 cut(s)	91, 93, 656, 890
HincII	GTYRAC	1 cut(s)	834
HindII	GTYRAC	1 cut(s)	834
HindIII	AAGCTT	3 cut(s)	371, 533, 709
HinfI	GANTC	4 cut(s)	68, 524, 577, 763
HphI	GGTGA	1 cut(s)	601
Hpy166II	GTNNAC	1 cut(s)	834
Hpy188I	TCNGA	4 cut(s)	53, 264, 340, 359
Hpy188III	TCNNGA	5 cut(s)	72, 613, 760, 791, 799
Hpy8I	GTNNAC	1 cut(s)	834
HpyAV	CCTTC	4 cut(s)	106, 379, 899, 959
HpyCH4III	ACNGT	3 cut(s)	18, 488, 866
HpyCH4IV	ACGT	1 cut(s)	210
HpyCH4V	TGCA	2 cut(s)	4, 840
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 110, 846
HpyF3I	CTNAG	2 cut(s)	41, 822
HpySE526I	ACGT	1 cut(s)	210
Hsp92I	GRCGYC	1 cut(s)	390
Hsp92II	CATG	2 cut(s)	475, 920
HspAI	GCGC	4 cut(s)	91, 93, 656, 890
Kpn2I	TCCGGA	2 cut(s)	612, 798
KroI	GCCGGC	1 cut(s)	307
KroNI	GCCGGC	1 cut(s)	309
Kzo9I	GATC	5 cut(s)	217, 561, 746, 801, 818
LguI	GCTCTTC	1 cut(s)	428
LmnI	GCTCC	3 cut(s)	360, 696, 945
Lsp1109I	GCAGC	4 cut(s)	505, 675, 852, 874
MaeI	CTAG	3 cut(s)	278, 348, 729
MaeII	ACGT	1 cut(s)	210
MalI	GATC	5 cut(s)	219, 563, 748, 803, 820
MbiI	CCGCTC	3 cut(s)	163, 258, 362
MboI	GATC	5 cut(s)	217, 561, 746, 801, 818
MfeI	CAATTG	1 cut(s)	930
MhlI	GDGCHC	1 cut(s)	160
MluCI	AATT	2 cut(s)	79, 930
MlyI	GAGTC	2 cut(s)	77, 518
MnlI	CCTC	9 cut(s)	18, 297, 324, 534, 564, 585, 609, 704, 893
MroI	TCCGGA	2 cut(s)	612, 798
MroNI	GCCGGC	1 cut(s)	307
MroXI	GAANNNNTTC	1 cut(s)	488
MseI	TTAA	3 cut(s)	465, 713, 725
MspR9I	CCNGG	3 cut(s)	304, 606, 685
MunI	CAATTG	1 cut(s)	930
Mva1269I	GAATGC	1 cut(s)	975
MvaI	CCWGG	1 cut(s)	606
MvnI	CGCG	3 cut(s)	93, 113, 656
MwoI	GCNNNNNNNGC	3 cut(s)	101, 110, 846
NaeI	GCCGGC	1 cut(s)	309
NciI	CCSGG	2 cut(s)	304, 685
NcoI	CCATGG	1 cut(s)	471
NdeII	GATC	5 cut(s)	217, 561, 746, 801, 818
NgoMIV	GCCGGC	1 cut(s)	307
NheI	GCTAGC	1 cut(s)	277
NlaIII	CATG	2 cut(s)	475, 920
NlaIV	GGNNCC	3 cut(s)	158, 159, 682
NmeAIII	GCCGAG	1 cut(s)	421
NsbI	TGCGCA	1 cut(s)	891
NspI	RCATGY	1 cut(s)	920
NspV	TTCGAA	1 cut(s)	383
PaeR7I	CTCGAG	2 cut(s)	22, 789
PauI	GCGCGC	1 cut(s)	91
PciI	ACATGT	1 cut(s)	916
PciSI	GCTCTTC	1 cut(s)	428
PcsI	WCGNNNNNNNCGW	2 cut(s)	566, 810
PctI	GAATGC	1 cut(s)	975
PdiI	GCCGGC	1 cut(s)	309
PdmI	GAANNNNTTC	1 cut(s)	488
PfeI	GAWTC	2 cut(s)	577, 763
PinAI	ACCGGT	1 cut(s)	292
PkrI	GCNGC	8 cut(s)	394, 520, 655, 690, 842, 845, 848, 889
PleI	GAGTC	2 cut(s)	76, 518
PpsI	GAGTC	2 cut(s)	76, 518
PscI	ACATGT	1 cut(s)	916
PshAI	GACNNNNGTC	1 cut(s)	67
Psp6I	CCWGG	1 cut(s)	604
PspGI	CCWGG	1 cut(s)	604
PspN4I	GGNNCC	3 cut(s)	158, 159, 682
PspOMI	GGGCCC	1 cut(s)	156
PspPI	GGNCC	5 cut(s)	53, 58, 156, 157, 681
PspXI	VCTCGAGB	1 cut(s)	22
PteI	GCGCGC	1 cut(s)	91
RsaI	GTAC	2 cut(s)	20, 545
RsaNI	GTAC	2 cut(s)	19, 544
Rsr2I	CGGWCCG	1 cut(s)	53
RsrII	CGGWCCG	1 cut(s)	53
SapI	GCTCTTC	1 cut(s)	428
SaqAI	TTAA	3 cut(s)	465, 713, 725
SatI	GCNGC	8 cut(s)	393, 519, 654, 689, 841, 844, 847, 888
Sau3AI	GATC	5 cut(s)	217, 561, 746, 801, 818
Sau96I	GGNCC	5 cut(s)	53, 58, 156, 157, 681
SchI	GAGTC	2 cut(s)	77, 518
ScrFI	CCNGG	3 cut(s)	304, 606, 685
SduI	GDGCHC	1 cut(s)	160
SfcI	CTRYAG	1 cut(s)	783
Sfr274I	CTCGAG	2 cut(s)	22, 789
SfuI	TTCGAA	1 cut(s)	383
SinI	GGWCC	1 cut(s)	53
SlaI	CTCGAG	2 cut(s)	22, 789
SmlI	CTYRAG	3 cut(s)	22, 739, 789
SmoI	CTYRAG	3 cut(s)	22, 739, 789
Sse9I	AATT	2 cut(s)	79, 930
SspMI	CTAG	3 cut(s)	278, 348, 729
StyD4I	CCNGG	3 cut(s)	302, 604, 683
StyI	CCWWGG	1 cut(s)	471
TaaI	ACNGT	3 cut(s)	18, 488, 866
TaiI	ACGT	1 cut(s)	213
TaqI	TCGA	8 cut(s)	23, 216, 289, 383, 569, 790, 804, 817
TaqII	GACCGA	1 cut(s)	26
TasI	AATT	2 cut(s)	79, 930
TatI	WGTACW	1 cut(s)	18
TauI	GCSGC	4 cut(s)	395, 656, 846, 849
TfiI	GAWTC	2 cut(s)	577, 763
Tru1I	TTAA	3 cut(s)	465, 713, 725
Tru9I	TTAA	3 cut(s)	465, 713, 725
TseI	GCWGC	4 cut(s)	518, 688, 840, 887
TspDTI	ATGAA	4 cut(s)	88, 481, 497, 688
TspGWI	ACGGA	1 cut(s)	802
VpaK11BI	GGWCC	1 cut(s)	53
XapI	RAATTY	1 cut(s)	79
XceI	RCATGY	1 cut(s)	920
XhoI	CTCGAG	2 cut(s)	22, 789
XmnI	GAANNNNTTC	1 cut(s)	488
XspI	CTAG	3 cut(s)	278, 348, 729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.