Rmu_sc0000366.1_g000026

protein heterodimerization activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000366.1
OG0031065
Physical Location & Seq
Forward (+)
119946 .. 120752
807 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 675 bp
atgcaaaaatccaaactgtactcgaggtatcggttcggtcttagtttcttcggaccggcccgacccgagtccagagtaaatttacaaaagcgcgccttcattgccctgcccgcgaaacccaaaagtccatttcaaaatcaaataagcattattagggccccgctcaatcacagccatccactacaaccagtcaaacatccaagtctccacgtcatcgatccgcacctgtctgtctccaccaatcaaatcccaccccgctctccgaaaccttgtcagctagcttctcctcgaccggtttcttcccggccggcttcttctctgccattgttgagggtttcagagctttctaggaagctccgagcggagaagaagattccggcttcgaaggacgccgccgagaagaagaagaagaagaagaagaagcgtccaaagaagagcgtggagacctacaagacctacatctttaaggccatggggattatgaacagtttcatcaatgacatatttgagaagctggctgccgactcttccaagcttgcgaggtacaataagcagatgacgatcacttcgagggagattcaaactgcggtgaggttggtgcttcctggtgagtttgctaagcacgctgtttctgaggggactaaggctgtgactaagtttactactactaaatag

Protein Analysis

224

Amino Acids

25.24

Weight (kDa)

10.79

Isoelectric Point (pI)

44.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 156 - 199 1.3e-08 Core histone H2A/H2B/H3/H4 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031065)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000366.1_g000004 Rmu_sc0000366.1_g000026

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 3 cut(s) 163, 258, 362
AccII CGCG 2 cut(s) 93, 113
AciI CCGC 7 cut(s) 111, 161, 221, 256, 362, 393, 587
AclWI GGATC 1 cut(s) 212
AcoI YGGCCR 1 cut(s) 305
AcsI RAATTY 1 cut(s) 79
AcyI GRCGYC 1 cut(s) 390
AfaI GTAC 2 cut(s) 20, 545
AgeI ACCGGT 1 cut(s) 292
AgsI TTSAA 2 cut(s) 134, 581
AjiI CACGTC 1 cut(s) 211
AjnI CCWGG 1 cut(s) 604
AluBI AGCT 6 cut(s) 277, 281, 343, 355, 514, 535
AluI AGCT 6 cut(s) 277, 281, 343, 355, 514, 535
Alw26I GTCTC 3 cut(s) 209, 238, 437
AlwI GGATC 1 cut(s) 212
Ama87I CYCGRG 2 cut(s) 22, 65
AoxI GGCC 4 cut(s) 57, 156, 305, 468
ApaI GGGCCC 1 cut(s) 160
ApeKI GCWGC 1 cut(s) 518
ApoI RAATTY 1 cut(s) 79
ArsI GACNNNNNNTTYG 2 cut(s) 550, 582
AsiGI ACCGGT 1 cut(s) 292
Asp700I GAANNNNTTC 1 cut(s) 488
AspLEI GCGC 2 cut(s) 93, 95
AspS9I GGNCC 4 cut(s) 53, 58, 156, 157
AsuC2I CCSGG 1 cut(s) 304
AsuHPI GGTGA 2 cut(s) 601, 620
AsuII TTCGAA 1 cut(s) 383
AsuNHI GCTAGC 1 cut(s) 277
AvaI CYCGRG 2 cut(s) 22, 65
AvaII GGWCC 1 cut(s) 53
BaeGI GKGCMC 1 cut(s) 160
BanII GRGCYC 1 cut(s) 160
BbvI GCAGC 1 cut(s) 505
BccI CCATC 1 cut(s) 183
BciT130I CCWGG 1 cut(s) 606
BcnI CCSGG 1 cut(s) 304
BcoDI GTCTC 3 cut(s) 209, 238, 437
BfaI CTAG 2 cut(s) 278, 348
BisI GCNGC 2 cut(s) 393, 519
BlpI GCTNAGC 1 cut(s) 618
BlsI GCNGC 2 cut(s) 394, 520
Bme1390I CCNGG 2 cut(s) 304, 606
Bme18I GGWCC 1 cut(s) 53
BmeT110I CYCGRG 2 cut(s) 22, 65
BmgBI CACGTC 1 cut(s) 211
BmgT120I GGNCC 4 cut(s) 53, 58, 156, 157
BmiI GGNNCC 2 cut(s) 158, 159
BmrFI CCNGG 2 cut(s) 304, 606
BmtI GCTAGC 1 cut(s) 281
BoxI GACNNNNGTC 1 cut(s) 67
Bpu1102I GCTNAGC 1 cut(s) 618
Bpu14I TTCGAA 1 cut(s) 383
BpuMI CCSGG 1 cut(s) 304
Bsa29I ATCGAT 1 cut(s) 216
BsaBI GATNNNNATC 1 cut(s) 560
BsaHI GRCGYC 1 cut(s) 390
BsaI GGTCTC 1 cut(s) 437
BsaJI CCNNGG 1 cut(s) 471
BsaWI WCCGGW 1 cut(s) 292
Bse118I RCCGGY 3 cut(s) 55, 292, 307
Bse1I ACTGG 1 cut(s) 188
Bse3DI GCAATG 1 cut(s) 99
Bse8I GATNNNNATC 1 cut(s) 560
BseBI CCWGG 1 cut(s) 606
BseCI ATCGAT 1 cut(s) 216
BseDI CCNNGG 1 cut(s) 471
BseGI GGATG 2 cut(s) 175, 196
BseJI GATNNNNATC 1 cut(s) 560
BseMI GCAATG 1 cut(s) 99
BseMII CTCAG 1 cut(s) 624
BseNI ACTGG 1 cut(s) 188
BsePI GCGCGC 1 cut(s) 91
BseRI GAGGAG 1 cut(s) 276
BseSI GKGCMC 1 cut(s) 160
BseX3I CGGCCG 1 cut(s) 305
BseXI GCAGC 1 cut(s) 505
Bsh1236I CGCG 2 cut(s) 93, 113
Bsh1285I CGRYCG 2 cut(s) 293, 308
BshFI GGCC 4 cut(s) 59, 158, 307, 470
BshTI ACCGGT 1 cut(s) 292
BshVI ATCGAT 1 cut(s) 216
BsiEI CGRYCG 2 cut(s) 293, 308
BsiHKCI CYCGRG 2 cut(s) 22, 65
BsiSI CCGG 5 cut(s) 56, 293, 304, 308, 377
BslFI GGGAC 1 cut(s) 652
BsmAI GTCTC 3 cut(s) 209, 238, 437
BsmFI GGGAC 1 cut(s) 652
BsnI GGCC 4 cut(s) 59, 158, 307, 470
Bso31I GGTCTC 1 cut(s) 437
BsoBI CYCGRG 2 cut(s) 22, 65
Bsp119I TTCGAA 1 cut(s) 383
Bsp120I GGGCCC 1 cut(s) 156
Bsp1286I GDGCHC 1 cut(s) 160
Bsp143I GATC 2 cut(s) 217, 561
Bsp1720I GCTNAGC 1 cut(s) 618
Bsp19I CCATGG 1 cut(s) 471
BspACI CCGC 7 cut(s) 111, 161, 221, 256, 362, 393, 587
BspANI GGCC 4 cut(s) 59, 158, 307, 470
BspCNI CTCAG 1 cut(s) 625
BspDI ATCGAT 1 cut(s) 216
BspFNI CGCG 2 cut(s) 93, 113
BspLI GGNNCC 2 cut(s) 158, 159
BspOI GCTAGC 1 cut(s) 281
BspPI GGATC 1 cut(s) 212
BspQI GCTCTTC 1 cut(s) 428
BspT104I TTCGAA 1 cut(s) 383
BspTNI GGTCTC 1 cut(s) 437
BsrBI CCGCTC 3 cut(s) 163, 258, 362
BsrDI GCAATG 1 cut(s) 99
BsrFI RCCGGY 3 cut(s) 55, 292, 307
BsrI ACTGG 1 cut(s) 188
BssAI RCCGGY 3 cut(s) 55, 292, 307
BssECI CCNNGG 1 cut(s) 471
BssHII GCGCGC 1 cut(s) 91
BssMI GATC 2 cut(s) 217, 561
BssNI GRCGYC 1 cut(s) 390
BssT1I CCWWGG 1 cut(s) 471
Bst2UI CCWGG 1 cut(s) 606
Bst4CI ACNGT 2 cut(s) 18, 488
Bst6I CTCTTC 2 cut(s) 428, 532
BstACI GRCGYC 1 cut(s) 390
BstBI TTCGAA 1 cut(s) 383
BstC8I GCNNGC 7 cut(s) 93, 111, 279, 309, 516, 537, 624
BstDEI CTNAG 5 cut(s) 41, 618, 633, 642, 654
BstDSI CCRYGG 1 cut(s) 471
BstF5I GGATG 2 cut(s) 175, 196
BstFNI CGCG 2 cut(s) 93, 113
BstHHI GCGC 2 cut(s) 93, 95
BstKTI GATC 2 cut(s) 220, 564
BstMAI GTCTC 3 cut(s) 209, 238, 437
BstMBI GATC 2 cut(s) 217, 561
BstMCI CGRYCG 2 cut(s) 293, 308
BstMWI GCNNNNNNNGC 3 cut(s) 101, 110, 623
BstNI CCWGG 1 cut(s) 606
BstPAI GACNNNNGTC 1 cut(s) 67
BstSCI CCNGG 2 cut(s) 302, 604
BstSLI GKGCMC 1 cut(s) 160
BstUI CGCG 2 cut(s) 93, 113
BstV1I GCAGC 1 cut(s) 505
BstZI CGGCCG 1 cut(s) 305
Bsu15I ATCGAT 1 cut(s) 216
BsuRI GGCC 4 cut(s) 59, 158, 307, 470
BsuTUI ATCGAT 1 cut(s) 216
BtgI CCRYGG 1 cut(s) 471
BtrI CACGTC 1 cut(s) 211
BtsCI GGATG 2 cut(s) 175, 196
Cac8I GCNNGC 7 cut(s) 93, 111, 279, 309, 516, 537, 624
CfoI GCGC 2 cut(s) 93, 95
Cfr10I RCCGGY 3 cut(s) 55, 292, 307
Cfr13I GGNCC 4 cut(s) 53, 58, 156, 157
ClaI ATCGAT 1 cut(s) 216
CpoI CGGWCCG 1 cut(s) 53
CseI GACGC 2 cut(s) 398, 413
Csp6I GTAC 2 cut(s) 19, 544
CspAI ACCGGT 1 cut(s) 292
CspI CGGWCCG 1 cut(s) 53
CviAII CATG 1 cut(s) 472
CviQI GTAC 2 cut(s) 19, 544
DdeI CTNAG 5 cut(s) 41, 618, 633, 642, 654
DpnI GATC 2 cut(s) 219, 563
DpnII GATC 2 cut(s) 217, 561
EaeI YGGCCR 1 cut(s) 305
EagI CGGCCG 1 cut(s) 305
Eam1104I CTCTTC 2 cut(s) 428, 532
EarI CTCTTC 2 cut(s) 428, 532
EclXI CGGCCG 1 cut(s) 305
Eco130I CCWWGG 1 cut(s) 471
Eco24I GRGCYC 1 cut(s) 160
Eco31I GGTCTC 1 cut(s) 437
Eco47I GGWCC 1 cut(s) 53
Eco52I CGGCCG 1 cut(s) 305
Eco88I CYCGRG 2 cut(s) 22, 65
EcoO109I RGGNCCY 2 cut(s) 156, 157
EcoRII CCWGG 1 cut(s) 604
EcoT14I CCWWGG 1 cut(s) 471
EcoT38I GRGCYC 1 cut(s) 160
ErhI CCWWGG 1 cut(s) 471
FaeI CATG 1 cut(s) 475
FaiI YATR 3 cut(s) 473, 482, 503
FalI AAGNNNNNCTT 2 cut(s) 80, 112
FaqI GGGAC 1 cut(s) 652
FatI CATG 1 cut(s) 471
FauI CCCGC 3 cut(s) 118, 168, 263
Fnu4HI GCNGC 2 cut(s) 393, 519
FokI GGATG 2 cut(s) 162, 183
FriOI GRGCYC 1 cut(s) 160
Fsp4HI GCNGC 2 cut(s) 393, 519
FspBI CTAG 2 cut(s) 278, 348
GlaI GCGC 2 cut(s) 92, 94
GluI GCNGC 2 cut(s) 393, 519
HaeIII GGCC 4 cut(s) 59, 158, 307, 470
HapII CCGG 5 cut(s) 56, 293, 304, 308, 377
HgaI GACGC 2 cut(s) 398, 413
HhaI GCGC 2 cut(s) 93, 95
Hin1I GRCGYC 1 cut(s) 390
Hin1II CATG 1 cut(s) 475
Hin6I GCGC 2 cut(s) 91, 93
HinP1I GCGC 2 cut(s) 91, 93
HindIII AAGCTT 1 cut(s) 533
HinfI GANTC 4 cut(s) 68, 373, 524, 577
HpaII CCGG 5 cut(s) 56, 293, 304, 308, 377
HphI GGTGA 2 cut(s) 601, 620
Hpy166II GTNNAC 1 cut(s) 660
Hpy188I TCNGA 5 cut(s) 53, 264, 340, 359, 634
Hpy188III TCNNGA 1 cut(s) 72
Hpy8I GTNNAC 1 cut(s) 660
HpyAV CCTTC 2 cut(s) 106, 379
HpyCH4III ACNGT 2 cut(s) 18, 488
HpyCH4IV ACGT 1 cut(s) 210
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 110, 623
HpyF3I CTNAG 5 cut(s) 41, 618, 633, 642, 654
HpySE526I ACGT 1 cut(s) 210
Hsp92I GRCGYC 1 cut(s) 390
Hsp92II CATG 1 cut(s) 475
HspAI GCGC 2 cut(s) 91, 93
KroI GCCGGC 1 cut(s) 307
KroNI GCCGGC 1 cut(s) 309
Kzo9I GATC 2 cut(s) 217, 561
LguI GCTCTTC 1 cut(s) 428
LmnI GCTCC 1 cut(s) 360
Lsp1109I GCAGC 1 cut(s) 505
MaeI CTAG 2 cut(s) 278, 348
MaeII ACGT 1 cut(s) 210
MaeIII GTNAC 1 cut(s) 649
MalI GATC 2 cut(s) 219, 563
MbiI CCGCTC 3 cut(s) 163, 258, 362
MboI GATC 2 cut(s) 217, 561
MhlI GDGCHC 1 cut(s) 160
MluCI AATT 1 cut(s) 79
MlyI GAGTC 2 cut(s) 77, 518
MnlI CCTC 7 cut(s) 18, 297, 324, 534, 564, 585, 628
MroNI GCCGGC 1 cut(s) 307
MroXI GAANNNNTTC 1 cut(s) 488
MseI TTAA 1 cut(s) 465
MspI CCGG 5 cut(s) 56, 293, 304, 308, 377
MspR9I CCNGG 2 cut(s) 304, 606
MvaI CCWGG 1 cut(s) 606
MvnI CGCG 2 cut(s) 93, 113
MwoI GCNNNNNNNGC 3 cut(s) 101, 110, 623
NaeI GCCGGC 1 cut(s) 309
NciI CCSGG 1 cut(s) 304
NcoI CCATGG 1 cut(s) 471
NdeII GATC 2 cut(s) 217, 561
NgoMIV GCCGGC 1 cut(s) 307
NheI GCTAGC 1 cut(s) 277
NlaIII CATG 1 cut(s) 475
NlaIV GGNNCC 2 cut(s) 158, 159
NmeAIII GCCGAG 1 cut(s) 421
NmuCI GTSAC 1 cut(s) 649
NspV TTCGAA 1 cut(s) 383
PaeR7I CTCGAG 1 cut(s) 22
PauI GCGCGC 1 cut(s) 91
PciSI GCTCTTC 1 cut(s) 428
PcsI WCGNNNNNNNCGW 1 cut(s) 566
PdiI GCCGGC 1 cut(s) 309
PdmI GAANNNNTTC 1 cut(s) 488
PfeI GAWTC 2 cut(s) 373, 577
PinAI ACCGGT 1 cut(s) 292
PkrI GCNGC 2 cut(s) 394, 520
PleI GAGTC 2 cut(s) 76, 518
PpsI GAGTC 2 cut(s) 76, 518
PshAI GACNNNNGTC 1 cut(s) 67
Psp6I CCWGG 1 cut(s) 604
PspGI CCWGG 1 cut(s) 604
PspN4I GGNNCC 2 cut(s) 158, 159
PspOMI GGGCCC 1 cut(s) 156
PspPI GGNCC 4 cut(s) 53, 58, 156, 157
PspXI VCTCGAGB 1 cut(s) 22
PteI GCGCGC 1 cut(s) 91
RsaI GTAC 2 cut(s) 20, 545
RsaNI GTAC 2 cut(s) 19, 544
Rsr2I CGGWCCG 1 cut(s) 53
RsrII CGGWCCG 1 cut(s) 53
SapI GCTCTTC 1 cut(s) 428
SaqAI TTAA 1 cut(s) 465
SatI GCNGC 2 cut(s) 393, 519
Sau3AI GATC 2 cut(s) 217, 561
Sau96I GGNCC 4 cut(s) 53, 58, 156, 157
SchI GAGTC 2 cut(s) 77, 518
ScrFI CCNGG 2 cut(s) 304, 606
SduI GDGCHC 1 cut(s) 160
Sfr274I CTCGAG 1 cut(s) 22
SfuI TTCGAA 1 cut(s) 383
SinI GGWCC 1 cut(s) 53
SlaI CTCGAG 1 cut(s) 22
SmlI CTYRAG 1 cut(s) 22
SmoI CTYRAG 1 cut(s) 22
Sse9I AATT 1 cut(s) 79
SsiI CCGC 7 cut(s) 111, 161, 221, 256, 362, 393, 587
SspMI CTAG 2 cut(s) 278, 348
StyD4I CCNGG 2 cut(s) 302, 604
StyI CCWWGG 1 cut(s) 471
TaaI ACNGT 2 cut(s) 18, 488
TaiI ACGT 1 cut(s) 213
TaqI TCGA 5 cut(s) 23, 216, 289, 383, 569
TaqII GACCGA 1 cut(s) 26
TasI AATT 1 cut(s) 79
TatI WGTACW 1 cut(s) 18
TauI GCSGC 1 cut(s) 395
TfiI GAWTC 2 cut(s) 373, 577
Tru1I TTAA 1 cut(s) 465
Tru9I TTAA 1 cut(s) 465
TseFI GTSAC 1 cut(s) 649
TseI GCWGC 1 cut(s) 518
Tsp45I GTSAC 1 cut(s) 649
TspDTI ATGAA 3 cut(s) 88, 481, 497
VpaK11BI GGWCC 1 cut(s) 53
XapI RAATTY 1 cut(s) 79
XhoI CTCGAG 1 cut(s) 22
XmnI GAANNNNTTC 1 cut(s) 488
XspI CTAG 2 cut(s) 278, 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.