Rmu_sc0000375.1_g000002

Protein of unknown function (DUF1005)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000375.1
OG0031068
Physical Location & Seq
Reverse (-)
5092 .. 7901
2810 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 588 bp
atgagcgccgaggtcggaactcatacccaacaccaacggcgacatgagcgtcggcggcattgctttggccgagtcgactctgagtttaaacaaagccgggaagtttgttctggacctagggtcagcccgaagagcagtggggacttcgggtatgggttttggccgtattgcttgtacaaagggtttgtgatgttggagcgtgtggagggtgagggcaggtgcagcaagtccggcaaactggaaaggcacagaggaagaagaagaagagaggaggagagaggaggccaattgaactggtggctggaaaatttgggatcaggggttctctcagtttcggcaaggctgcggtcggataggcacacctttgaggtgatggtggagagtagtaatggggaagatgcaaggctgccggaatttgttgtttccgagttcacaggttcagcgttactggtcggccggaggcatggtgacagggtggtgcggcgacggcctggtcaaaggctttttggctgcaaggtcaaaccttatttggatttacgctttgctctgttgttcagctttgggcctgagcccttttgggttgcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1005

Protein Analysis

195

Amino Acids

22.55

Weight (kDa)

10.08

Isoelectric Point (pI)

60.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1005 PF06219 25 - 77 6.9e-08 Protein of unknown function (DUF1005)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031068)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000375.1_g000002 Rmu_sc0025813.1_g000002

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 207
AasI GACNNNNNNGTC 2 cut(s) 48, 492
Acc36I ACCTGC 1 cut(s) 207
AccI GTMKAC 1 cut(s) 75
AciI CCGC 3 cut(s) 55, 346, 481
AclWI GGATC 1 cut(s) 322
AcoI YGGCCR 3 cut(s) 67, 161, 454
AcsI RAATTY 2 cut(s) 307, 413
AfaI GTAC 1 cut(s) 176
AgsI TTSAA 1 cut(s) 292
AhdI GACNNNNNGTC 1 cut(s) 119
AjnI CCWGG 1 cut(s) 490
AloI GAACNNNNNNTCC 2 cut(s) 306, 338
AluBI AGCT 1 cut(s) 558
AluI AGCT 1 cut(s) 558
AlwI GGATC 1 cut(s) 322
AoxI GGCC 6 cut(s) 67, 161, 283, 454, 488, 563
ApeKI GCWGC 4 cut(s) 222, 343, 406, 510
ApoI RAATTY 2 cut(s) 307, 413
AspA2I CCTAGG 1 cut(s) 116
AspLEI GCGC 1 cut(s) 8
AspS9I GGNCC 2 cut(s) 113, 563
AsuC2I CCSGG 1 cut(s) 98
AsuHPI GGTGA 3 cut(s) 221, 382, 479
AvaII GGWCC 1 cut(s) 113
AvrII CCTAGG 1 cut(s) 116
BanII GRGCYC 1 cut(s) 573
BbvI GCAGC 4 cut(s) 234, 330, 393, 497
BccI CCATC 1 cut(s) 367
BceAI ACGGC 3 cut(s) 53, 148, 503
BciT130I CCWGG 1 cut(s) 492
BcnI CCSGG 1 cut(s) 98
BfaI CTAG 2 cut(s) 117, 586
BfoI RGCGCY 1 cut(s) 9
BfuAI ACCTGC 1 cut(s) 207
BisI GCNGC 6 cut(s) 56, 223, 344, 407, 482, 511
BlnI CCTAGG 1 cut(s) 116
BlsI GCNGC 6 cut(s) 57, 224, 345, 408, 483, 512
Bme1390I CCNGG 2 cut(s) 98, 492
Bme18I GGWCC 1 cut(s) 113
BmeRI GACNNNNNGTC 1 cut(s) 119
BmgT120I GGNCC 2 cut(s) 113, 563
BmrFI CCNGG 2 cut(s) 98, 492
BmsI GCATC 1 cut(s) 388
Bpu10I CCTNAGC 1 cut(s) 567
BpuMI CCSGG 1 cut(s) 98
BsaJI CCNNGG 2 cut(s) 9, 116
BsaXI ACNNNNNCTCC 2 cut(s) 451, 481
Bse1I ACTGG 3 cut(s) 243, 299, 453
Bse3DI GCAATG 1 cut(s) 58
BseBI CCWGG 1 cut(s) 492
BseDI CCNNGG 2 cut(s) 9, 116
BseMI GCAATG 1 cut(s) 58
BseMII CTCAG 3 cut(s) 72, 342, 558
BseNI ACTGG 3 cut(s) 243, 299, 453
BseRI GAGGAG 3 cut(s) 284, 287, 294
BseX3I CGGCCG 1 cut(s) 454
BseXI GCAGC 4 cut(s) 234, 330, 393, 497
BsgI GTGCAG 1 cut(s) 241
Bsh1285I CGRYCG 2 cut(s) 350, 457
BshFI GGCC 6 cut(s) 69, 163, 285, 456, 490, 565
BsiEI CGRYCG 2 cut(s) 350, 457
BsiSI CCGG 4 cut(s) 97, 231, 410, 457
BslFI GGGAC 1 cut(s) 155
BsmFI GGGAC 1 cut(s) 155
BsnI GGCC 6 cut(s) 69, 163, 285, 456, 490, 565
Bsp1286I GDGCHC 1 cut(s) 573
Bsp1407I TGTACA 1 cut(s) 174
Bsp143I GATC 1 cut(s) 314
BspACI CCGC 3 cut(s) 55, 346, 481
BspANI GGCC 6 cut(s) 69, 163, 285, 456, 490, 565
BspCNI CTCAG 3 cut(s) 73, 341, 559
BspMI ACCTGC 1 cut(s) 207
BspPI GGATC 1 cut(s) 322
BspQI GCTCTTC 1 cut(s) 125
BsrDI GCAATG 1 cut(s) 58
BsrGI TGTACA 1 cut(s) 174
BsrI ACTGG 3 cut(s) 243, 299, 453
BssECI CCNNGG 2 cut(s) 9, 116
BssMI GATC 1 cut(s) 314
BssT1I CCWWGG 1 cut(s) 116
Bst2UI CCWGG 1 cut(s) 492
Bst6I CTCTTC 2 cut(s) 125, 259
BstAUI TGTACA 1 cut(s) 174
BstDEI CTNAG 3 cut(s) 81, 328, 567
BstH2I RGCGCY 1 cut(s) 9
BstHHI GCGC 1 cut(s) 8
BstKTI GATC 1 cut(s) 317
BstMBI GATC 1 cut(s) 314
BstMCI CGRYCG 2 cut(s) 350, 457
BstMWI GCNNNNNNNGC 6 cut(s) 46, 55, 132, 222, 231, 487
BstNI CCWGG 1 cut(s) 492
BstSCI CCNGG 2 cut(s) 96, 490
BstV1I GCAGC 4 cut(s) 234, 330, 393, 497
BstZI CGGCCG 1 cut(s) 454
BsuRI GGCC 6 cut(s) 69, 163, 285, 456, 490, 565
BtsI GCAGTG 1 cut(s) 142
BtsIMutI CAGTG 1 cut(s) 142
BveI ACCTGC 1 cut(s) 207
CfoI GCGC 1 cut(s) 8
Cfr13I GGNCC 2 cut(s) 113, 563
CseI GACGC 1 cut(s) 38
Csp6I GTAC 1 cut(s) 175
CviAII CATG 2 cut(s) 44, 464
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 3 cut(s) 81, 328, 567
DpnI GATC 1 cut(s) 316
DpnII GATC 1 cut(s) 314
DraI TTTAAA 1 cut(s) 88
DrdI GACNNNNNNGTC 2 cut(s) 48, 492
DriI GACNNNNNGTC 1 cut(s) 119
DseDI GACNNNNNNGTC 2 cut(s) 48, 492
EaeI YGGCCR 3 cut(s) 67, 161, 454
EagI CGGCCG 1 cut(s) 454
Eam1104I CTCTTC 2 cut(s) 125, 259
Eam1105I GACNNNNNGTC 1 cut(s) 119
EarI CTCTTC 2 cut(s) 125, 259
EclXI CGGCCG 1 cut(s) 454
Eco130I CCWWGG 1 cut(s) 116
Eco24I GRGCYC 1 cut(s) 573
Eco47I GGWCC 1 cut(s) 113
Eco52I CGGCCG 1 cut(s) 454
EcoRII CCWGG 1 cut(s) 490
EcoT14I CCWWGG 1 cut(s) 116
EcoT38I GRGCYC 1 cut(s) 573
ErhI CCWWGG 1 cut(s) 116
FaeI CATG 2 cut(s) 47, 467
FaiI YATR 4 cut(s) 24, 45, 153, 465
FaqI GGGAC 1 cut(s) 155
FatI CATG 2 cut(s) 43, 463
FblI GTMKAC 1 cut(s) 75
Fnu4HI GCNGC 6 cut(s) 56, 223, 344, 407, 482, 511
FriOI GRGCYC 1 cut(s) 573
Fsp4HI GCNGC 6 cut(s) 56, 223, 344, 407, 482, 511
FspBI CTAG 2 cut(s) 117, 586
GlaI GCGC 1 cut(s) 7
GluI GCNGC 6 cut(s) 56, 223, 344, 407, 482, 511
HaeII RGCGCY 1 cut(s) 9
HaeIII GGCC 6 cut(s) 69, 163, 285, 456, 490, 565
HapII CCGG 4 cut(s) 97, 231, 410, 457
HgaI GACGC 1 cut(s) 38
HhaI GCGC 1 cut(s) 8
Hin1II CATG 2 cut(s) 47, 467
Hin6I GCGC 1 cut(s) 6
HinP1I GCGC 1 cut(s) 6
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HinfI GANTC 2 cut(s) 72, 77
HpaII CCGG 4 cut(s) 97, 231, 410, 457
HphI GGTGA 3 cut(s) 221, 382, 479
Hpy166II GTNNAC 2 cut(s) 76, 432
Hpy188I TCNGA 4 cut(s) 17, 82, 352, 427
Hpy188III TCNNGA 1 cut(s) 111
Hpy8I GTNNAC 2 cut(s) 76, 432
Hpy99I CGWCG 2 cut(s) 54, 489
HpyCH4V TGCA 3 cut(s) 222, 401, 513
HpyF10VI GCNNNNNNNGC 6 cut(s) 46, 55, 132, 222, 231, 487
HpyF3I CTNAG 3 cut(s) 81, 328, 567
Hsp92II CATG 2 cut(s) 47, 467
HspAI GCGC 1 cut(s) 6
Kzo9I GATC 1 cut(s) 314
LguI GCTCTTC 1 cut(s) 125
LmnI GCTCC 1 cut(s) 196
Lsp1109I GCAGC 4 cut(s) 234, 330, 393, 497
LweI GCATC 1 cut(s) 388
MaeI CTAG 2 cut(s) 117, 586
MaeIII GTNAC 2 cut(s) 444, 467
MalI GATC 1 cut(s) 316
MboI GATC 1 cut(s) 314
MboII GAAGA 6 cut(s) 142, 267, 270, 273, 276, 407
MfeI CAATTG 1 cut(s) 287
MhlI GDGCHC 1 cut(s) 573
MluCI AATT 3 cut(s) 287, 307, 413
MlyI GAGTC 2 cut(s) 71, 81
MmeI TCCRAC 2 cut(s) 174, 330
MseI TTAA 1 cut(s) 87
MspI CCGG 4 cut(s) 97, 231, 410, 457
MspR9I CCNGG 2 cut(s) 98, 492
MssI GTTTAAAC 1 cut(s) 88
MunI CAATTG 1 cut(s) 287
MvaI CCWGG 1 cut(s) 492
MwoI GCNNNNNNNGC 6 cut(s) 46, 55, 132, 222, 231, 487
NciI CCSGG 1 cut(s) 98
NdeII GATC 1 cut(s) 314
NlaIII CATG 2 cut(s) 47, 467
NmeAIII GCCGAG 2 cut(s) 34, 95
NmuCI GTSAC 1 cut(s) 467
PaqCI CACCTGC 1 cut(s) 207
PciSI GCTCTTC 1 cut(s) 125
PkrI GCNGC 6 cut(s) 57, 224, 345, 408, 483, 512
PleI GAGTC 2 cut(s) 71, 80
PmeI GTTTAAAC 1 cut(s) 88
PpsI GAGTC 2 cut(s) 71, 80
Psp6I CCWGG 1 cut(s) 490
PspGI CCWGG 1 cut(s) 490
PspPI GGNCC 2 cut(s) 113, 563
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
SalI GTCGAC 1 cut(s) 74
SapI GCTCTTC 1 cut(s) 125
SaqAI TTAA 1 cut(s) 87
SatI GCNGC 6 cut(s) 56, 223, 344, 407, 482, 511
Sau3AI GATC 1 cut(s) 314
Sau96I GGNCC 2 cut(s) 113, 563
SchI GAGTC 2 cut(s) 71, 81
ScrFI CCNGG 2 cut(s) 98, 492
SduI GDGCHC 1 cut(s) 573
SetI ASST 9 cut(s) 15, 118, 221, 365, 372, 439, 519, 526, 560
SfaNI GCATC 1 cut(s) 388
SinI GGWCC 1 cut(s) 113
Sse9I AATT 3 cut(s) 287, 307, 413
SsiI CCGC 3 cut(s) 55, 346, 481
SspMI CTAG 2 cut(s) 117, 586
StyD4I CCNGG 2 cut(s) 96, 490
StyI CCWWGG 1 cut(s) 116
TaqI TCGA 1 cut(s) 75
TasI AATT 3 cut(s) 287, 307, 413
TatI WGTACW 1 cut(s) 174
TauI GCSGC 2 cut(s) 58, 484
Tru1I TTAA 1 cut(s) 87
Tru9I TTAA 1 cut(s) 87
TscAI CASTG 1 cut(s) 142
TseFI GTSAC 1 cut(s) 467
TseI GCWGC 4 cut(s) 222, 343, 406, 510
Tsp45I GTSAC 1 cut(s) 467
TspRI CASTG 1 cut(s) 142
VpaK11BI GGWCC 1 cut(s) 113
XapI RAATTY 2 cut(s) 307, 413
XmaJI CCTAGG 1 cut(s) 116
XmiI GTMKAC 1 cut(s) 75
XspI CTAG 2 cut(s) 117, 586
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.