Rmu_sc0025813.1_g000002

Protein of unknown function (DUF1005)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0025813.1
OG0031068
Physical Location & Seq
Forward (+)
2517 .. 3083
567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0025813.1_g000002.1.cds

Sequence Viewer

Length: 567 bp
atgagcgccggcgacattgttctggccgagtcgactctgagtttaaacaaaggcgggaagtttgttctggacctcgggtcgggtaaccgcagcagggctccggttgttccgaacttgccggcatgcagcccgaagagcagtggggacttcgggtacgggttgtggctgtattgcttgtacagaaggtttgtgatgtcggtgcgtgtggagggggagggcaggtgcatcaagttcggcaaactgggaaggcacaaaggacgaagaaaaggagaggagaagagaggtgggtggagaaggaggatgacaaagtgctttttaaactattatacatatgttatttttgtttgtcaataccatgcaagtggtctggtggttggggctttcatttgcatatgtgttggtgtgggttcgagtctccctaacctcaaagtcgggaatttattttggatttttccatatttggttggccaaggccagtttgggaatttcacttctgtgtgggccccacctgtgctgacttggaacgccacgtcatcagctaaacggctgaaattgatggaatcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1005

Protein Analysis

188

Amino Acids

20.84

Weight (kDa)

9.96

Isoelectric Point (pI)

48.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031068)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000375.1_g000002 Rmu_sc0025813.1_g000002

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 210
Acc36I ACCTGC 1 cut(s) 210
AccI GTMKAC 1 cut(s) 32
AciI CCGC 2 cut(s) 54, 88
AcoI YGGCCR 2 cut(s) 24, 466
AcsI RAATTY 2 cut(s) 436, 484
AfaI GTAC 2 cut(s) 155, 179
AfiI CCNNNNNNNGG 2 cut(s) 79, 94
AhdI GACNNNNNGTC 1 cut(s) 76
AjiI CACGTC 1 cut(s) 531
AleI CACNNNNGTG 1 cut(s) 494
AluBI AGCT 1 cut(s) 539
AluI AGCT 1 cut(s) 539
Alw26I GTCTC 1 cut(s) 419
Ama87I CYCGRG 1 cut(s) 74
AoxI GGCC 4 cut(s) 24, 466, 472, 501
ApaI GGGCCC 1 cut(s) 505
ApeKI GCWGC 2 cut(s) 90, 126
ApoI RAATTY 2 cut(s) 436, 484
AspLEI GCGC 1 cut(s) 8
AspS9I GGNCC 3 cut(s) 70, 501, 502
AvaI CYCGRG 1 cut(s) 74
AvaII GGWCC 1 cut(s) 70
BaeGI GKGCMC 1 cut(s) 505
BalI TGGCCA 1 cut(s) 468
BanII GRGCYC 2 cut(s) 100, 505
BbvI GCAGC 2 cut(s) 102, 138
BccI CCATC 1 cut(s) 550
BceAI ACGGC 1 cut(s) 560
BcgI CGANNNNNNTGC 2 cut(s) 214, 248
BcoDI GTCTC 1 cut(s) 419
BfoI RGCGCY 1 cut(s) 9
BfuAI ACCTGC 1 cut(s) 210
BisI GCNGC 2 cut(s) 91, 127
BlsI GCNGC 2 cut(s) 92, 128
Bme18I GGWCC 1 cut(s) 70
BmeRI GACNNNNNGTC 1 cut(s) 76
BmeT110I CYCGRG 1 cut(s) 74
BmgBI CACGTC 1 cut(s) 531
BmgT120I GGNCC 3 cut(s) 70, 501, 502
BmiI GGNNCC 3 cut(s) 99, 503, 504
BmrI ACTGGG 1 cut(s) 251
BmsI GCATC 1 cut(s) 234
BmuI ACTGGG 1 cut(s) 251
BsaJI CCNNGG 2 cut(s) 73, 469
BsaWI WCCGGW 1 cut(s) 100
BsaXI ACNNNNNCTCC 2 cut(s) 206, 236
Bsc4I CCNNNNNNNGG 2 cut(s) 79, 94
Bse118I RCCGGY 2 cut(s) 8, 118
Bse1I ACTGG 2 cut(s) 246, 475
BseDI CCNNGG 2 cut(s) 73, 469
BseGI GGATG 1 cut(s) 306
BseLI CCNNNNNNNGG 2 cut(s) 79, 94
BseMII CTCAG 1 cut(s) 29
BseNI ACTGG 2 cut(s) 246, 475
BseRI GAGGAG 1 cut(s) 287
BseSI GKGCMC 1 cut(s) 505
BseXI GCAGC 2 cut(s) 102, 138
BshFI GGCC 4 cut(s) 26, 468, 474, 503
BsiHKCI CYCGRG 1 cut(s) 74
BsiSI CCGG 3 cut(s) 9, 101, 119
BslFI GGGAC 1 cut(s) 158
BslI CCNNNNNNNGG 2 cut(s) 79, 94
BsmAI GTCTC 1 cut(s) 419
BsmFI GGGAC 1 cut(s) 158
BsnI GGCC 4 cut(s) 26, 468, 474, 503
BsoBI CYCGRG 1 cut(s) 74
Bsp120I GGGCCC 1 cut(s) 501
Bsp1286I GDGCHC 2 cut(s) 100, 505
Bsp1407I TGTACA 1 cut(s) 177
BspACI CCGC 2 cut(s) 54, 88
BspANI GGCC 4 cut(s) 26, 468, 474, 503
BspCNI CTCAG 1 cut(s) 30
BspLI GGNNCC 3 cut(s) 99, 503, 504
BspMI ACCTGC 1 cut(s) 210
BspQI GCTCTTC 1 cut(s) 128
BsrFI RCCGGY 2 cut(s) 8, 118
BsrGI TGTACA 1 cut(s) 177
BsrI ACTGG 2 cut(s) 246, 475
BssAI RCCGGY 2 cut(s) 8, 118
BssECI CCNNGG 2 cut(s) 73, 469
BssT1I CCWWGG 1 cut(s) 469
Bst6I CTCTTC 2 cut(s) 128, 272
BstAUI TGTACA 1 cut(s) 177
BstC8I GCNNGC 3 cut(s) 10, 120, 124
BstDEI CTNAG 1 cut(s) 38
BstEII GGTNACC 1 cut(s) 83
BstF5I GGATG 1 cut(s) 306
BstH2I RGCGCY 1 cut(s) 9
BstHHI GCGC 1 cut(s) 8
BstMAI GTCTC 1 cut(s) 419
BstMWI GCNNNNNNNGC 1 cut(s) 135
BstNSI RCATGY 1 cut(s) 126
BstPI GGTNACC 1 cut(s) 83
BstSLI GKGCMC 1 cut(s) 505
BstV1I GCAGC 2 cut(s) 102, 138
BstXI CCANNNNNNTGG 1 cut(s) 362
BsuRI GGCC 4 cut(s) 26, 468, 474, 503
BtrI CACGTC 1 cut(s) 531
BtsCI GGATG 1 cut(s) 306
BtsI GCAGTG 1 cut(s) 145
BtsIMutI CAGTG 1 cut(s) 145
BveI ACCTGC 1 cut(s) 210
Cac8I GCNNGC 3 cut(s) 10, 120, 124
CfoI GCGC 1 cut(s) 8
Cfr10I RCCGGY 2 cut(s) 8, 118
Cfr13I GGNCC 3 cut(s) 70, 501, 502
Csp6I GTAC 2 cut(s) 154, 178
CviAII CATG 2 cut(s) 123, 356
CviQI GTAC 2 cut(s) 154, 178
DdeI CTNAG 1 cut(s) 38
DraI TTTAAA 2 cut(s) 45, 318
DriI GACNNNNNGTC 1 cut(s) 76
EaeI YGGCCR 2 cut(s) 24, 466
Eam1104I CTCTTC 2 cut(s) 128, 272
Eam1105I GACNNNNNGTC 1 cut(s) 76
EarI CTCTTC 2 cut(s) 128, 272
Eco130I CCWWGG 1 cut(s) 469
Eco24I GRGCYC 2 cut(s) 100, 505
Eco47I GGWCC 1 cut(s) 70
Eco88I CYCGRG 1 cut(s) 74
Eco91I GGTNACC 1 cut(s) 83
EcoO109I RGGNCCY 1 cut(s) 502
EcoO65I GGTNACC 1 cut(s) 83
EcoT14I CCWWGG 1 cut(s) 469
EcoT38I GRGCYC 2 cut(s) 100, 505
ErhI CCWWGG 1 cut(s) 469
FaeI CATG 2 cut(s) 126, 359
FaiI YATR 9 cut(s) 124, 327, 331, 333, 357, 392, 394, 457, 565
FaqI GGGAC 1 cut(s) 158
FatI CATG 2 cut(s) 122, 355
FauI CCCGC 1 cut(s) 47
FauNDI CATATG 2 cut(s) 331, 392
FblI GTMKAC 1 cut(s) 32
Fnu4HI GCNGC 2 cut(s) 91, 127
FokI GGATG 1 cut(s) 313
FriOI GRGCYC 2 cut(s) 100, 505
Fsp4HI GCNGC 2 cut(s) 91, 127
GlaI GCGC 1 cut(s) 7
GluI GCNGC 2 cut(s) 91, 127
HaeII RGCGCY 1 cut(s) 9
HaeIII GGCC 4 cut(s) 26, 468, 474, 503
HapII CCGG 3 cut(s) 9, 101, 119
HhaI GCGC 1 cut(s) 8
Hin1II CATG 2 cut(s) 126, 359
Hin6I GCGC 1 cut(s) 6
HinP1I GCGC 1 cut(s) 6
HincII GTYRAC 1 cut(s) 33
HindII GTYRAC 1 cut(s) 33
HinfI GANTC 4 cut(s) 29, 34, 412, 560
HpaII CCGG 3 cut(s) 9, 101, 119
Hpy166II GTNNAC 1 cut(s) 33
Hpy188I TCNGA 2 cut(s) 39, 111
Hpy188III TCNNGA 2 cut(s) 68, 433
Hpy8I GTNNAC 1 cut(s) 33
HpyAV CCTTC 3 cut(s) 177, 240, 288
HpyCH4IV ACGT 1 cut(s) 530
HpyCH4V TGCA 4 cut(s) 126, 225, 359, 390
HpyF10VI GCNNNNNNNGC 1 cut(s) 135
HpyF3I CTNAG 1 cut(s) 38
HpySE526I ACGT 1 cut(s) 530
Hsp92II CATG 2 cut(s) 126, 359
HspAI GCGC 1 cut(s) 6
KroI GCCGGC 2 cut(s) 8, 118
KroNI GCCGGC 2 cut(s) 10, 120
LguI GCTCTTC 1 cut(s) 128
LmnI GCTCC 1 cut(s) 103
Lsp1109I GCAGC 2 cut(s) 102, 138
LweI GCATC 1 cut(s) 234
MaeII ACGT 1 cut(s) 530
MaeIII GTNAC 1 cut(s) 83
MboII GAAGA 3 cut(s) 145, 273, 289
MhlI GDGCHC 2 cut(s) 100, 505
MlsI TGGCCA 1 cut(s) 468
MluCI AATT 3 cut(s) 436, 484, 551
MluNI TGGCCA 1 cut(s) 468
MlyI GAGTC 3 cut(s) 28, 38, 421
MnlI CCTC 7 cut(s) 83, 202, 208, 265, 275, 291, 434
Mox20I TGGCCA 1 cut(s) 468
MreI CGCCGGCG 1 cut(s) 8
MroNI GCCGGC 2 cut(s) 8, 118
MscI TGGCCA 1 cut(s) 468
MseI TTAA 2 cut(s) 44, 317
MslI CAYNNNNRTG 2 cut(s) 360, 494
Msp20I TGGCCA 1 cut(s) 468
MspI CCGG 3 cut(s) 9, 101, 119
MssI GTTTAAAC 1 cut(s) 45
MwoI GCNNNNNNNGC 1 cut(s) 135
NaeI GCCGGC 2 cut(s) 10, 120
NdeI CATATG 2 cut(s) 331, 392
NgoMIV GCCGGC 2 cut(s) 8, 118
NlaIII CATG 2 cut(s) 126, 359
NlaIV GGNNCC 3 cut(s) 99, 503, 504
NmeAIII GCCGAG 1 cut(s) 52
NspI RCATGY 1 cut(s) 126
OliI CACNNNNGTG 1 cut(s) 494
PaeI GCATGC 1 cut(s) 126
PaqCI CACCTGC 1 cut(s) 210
PciSI GCTCTTC 1 cut(s) 128
PdiI GCCGGC 2 cut(s) 10, 120
PfeI GAWTC 1 cut(s) 560
PkrI GCNGC 2 cut(s) 92, 128
PleI GAGTC 3 cut(s) 28, 37, 420
PmeI GTTTAAAC 1 cut(s) 45
PpsI GAGTC 3 cut(s) 28, 37, 420
PspEI GGTNACC 1 cut(s) 83
PspN4I GGNNCC 3 cut(s) 99, 503, 504
PspOMI GGGCCC 1 cut(s) 501
PspPI GGNCC 3 cut(s) 70, 501, 502
RsaI GTAC 2 cut(s) 155, 179
RsaNI GTAC 2 cut(s) 154, 178
RseI CAYNNNNRTG 2 cut(s) 360, 494
SalI GTCGAC 1 cut(s) 31
SapI GCTCTTC 1 cut(s) 128
SaqAI TTAA 2 cut(s) 44, 317
SatI GCNGC 2 cut(s) 91, 127
Sau96I GGNCC 3 cut(s) 70, 501, 502
SchI GAGTC 3 cut(s) 28, 38, 421
SduI GDGCHC 2 cut(s) 100, 505
SetI ASST 8 cut(s) 75, 188, 224, 286, 426, 511, 533, 541
SfaNI GCATC 1 cut(s) 234
SgrAI CRCCGGYG 1 cut(s) 8
SinI GGWCC 1 cut(s) 70
SmiMI CAYNNNNRTG 2 cut(s) 360, 494
SphI GCATGC 1 cut(s) 126
Sse9I AATT 3 cut(s) 436, 484, 551
SsiI CCGC 2 cut(s) 54, 88
StyI CCWWGG 1 cut(s) 469
TaiI ACGT 1 cut(s) 533
TaqI TCGA 2 cut(s) 32, 410
TasI AATT 3 cut(s) 436, 484, 551
TatI WGTACW 1 cut(s) 177
TfiI GAWTC 1 cut(s) 560
Tru1I TTAA 2 cut(s) 44, 317
Tru9I TTAA 2 cut(s) 44, 317
TscAI CASTG 1 cut(s) 145
TseI GCWGC 2 cut(s) 90, 126
TspDTI ATGAA 1 cut(s) 373
TspRI CASTG 1 cut(s) 145
VpaK11BI GGWCC 1 cut(s) 70
XapI RAATTY 2 cut(s) 436, 484
XceI RCATGY 1 cut(s) 126
XcmI CCANNNNNNNNNTGG 1 cut(s) 476
XmiI GTMKAC 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.