Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000431.1

Orthogroup ID

OG0029719

Physical Location & Seq

Genomic Coordinates Forward (+)

37051 .. 38935

Gene Structure 1885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

atggacattgatccagaatggaaaatgatcaggcctgatcttgggagatttgagaagtgggtcttgcgcaaagcatttgatgatgatcagaagccatatttaccaaagcacatcttgtacaggcagaaggagcagtttagtgatggtgtcgagcacggcttctccagtctctctcttcctccaccagtgatcaatcgacgccaaacaaccttctgtggcttcgtctcagccttgcgaagctacctacggcggtcttgggtcacggcacagccggaagtagcggtgaagaggtcggatgcgtccagccccgatttggattccaaccatggtagctcgagctaccgatcacgagaccttctcaaactccatccacaggttcgtatcaaccatctgaaactcccagaagcaccattccacggcggcgctgtcgctggaggcggctggagctcaaaaccccgatcggagcgaacaacggaccaaaggatcctgatatctcgagctacaggatgtcgttttgagtgtttcttggactggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0030054 GO:0032787 GO:0034641 GO:0042538 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0050896 GO:0055044 GO:0071704 GO:0072330 GO:0097164 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko01100 ko01110 map00250 map01100 map01110

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

178

Amino Acids

20.47

Weight (kDa)

9.54

Isoelectric Point (pI)

64.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asn_synthase	PF00733	2 - 54	2.6e-07	Asparagine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0029719)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0107931
rosa_multiflora	Rmu_sc0000431.1_g000004

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	68
AciI	CCGC	4 cut(s)	250, 281, 420, 438
AclWI	GGATC	3 cut(s)	5, 478, 491
AcyI	GRCGYC	1 cut(s)	199
AfaI	GTAC	1 cut(s)	119
AfiI	CCNNNNNNNGG	4 cut(s)	41, 313, 373, 416
AluBI	AGCT	5 cut(s)	240, 333, 339, 447, 500
AluI	AGCT	5 cut(s)	240, 333, 339, 447, 500
Alw21I	GWGCWC	2 cut(s)	156, 449
Alw26I	GTCTC	3 cut(s)	173, 229, 345
AlwI	GGATC	3 cut(s)	5, 478, 491
Ama87I	CYCGRG	2 cut(s)	334, 495
AoxI	GGCC	1 cut(s)	32
AspLEI	GCGC	2 cut(s)	69, 425
AspS9I	GGNCC	1 cut(s)	475
AsuHPI	GGTGA	1 cut(s)	295
AvaI	CYCGRG	2 cut(s)	334, 495
AvaII	GGWCC	1 cut(s)	475
BamHI	GGATCC	1 cut(s)	483
BanII	GRGCYC	1 cut(s)	449
BauI	CACGAG	1 cut(s)	348
Bbv12I	GWGCWC	2 cut(s)	156, 449
BccI	CCATC	3 cut(s)	137, 375, 396
BceAI	ACGGC	4 cut(s)	172, 263, 279, 433
BclI	TGATCA	3 cut(s)	27, 85, 189
BcoDI	GTCTC	3 cut(s)	173, 229, 345
BfmI	CTRYAG	1 cut(s)	501
BfoI	RGCGCY	1 cut(s)	426
BisI	GCNGC	2 cut(s)	421, 439
BlsI	GCNGC	2 cut(s)	422, 440
Bme18I	GGWCC	1 cut(s)	475
BmeT110I	CYCGRG	2 cut(s)	334, 495
BmgT120I	GGNCC	1 cut(s)	475
BmiI	GGNNCC	1 cut(s)	485
BmsI	GCATC	1 cut(s)	286
BplI	GAGNNNNNCTC	2 cut(s)	342, 374
BpmI	CTGGAG	3 cut(s)	148, 453, 463
BsaBI	GATNNNNATC	1 cut(s)	84
BsaHI	GRCGYC	1 cut(s)	199
BsaI	GGTCTC	1 cut(s)	345
BsaJI	CCNNGG	2 cut(s)	325, 415
BsaXI	ACNNNNNCTCC	2 cut(s)	146, 176
Bsc4I	CCNNNNNNNGG	4 cut(s)	41, 313, 373, 416
Bse1I	ACTGG	3 cut(s)	165, 185, 536
Bse8I	GATNNNNATC	1 cut(s)	84
BseDI	CCNNGG	2 cut(s)	325, 415
BseGI	GGATG	3 cut(s)	301, 367, 512
BseJI	GATNNNNATC	1 cut(s)	84
BseLI	CCNNNNNNNGG	4 cut(s)	41, 313, 373, 416
BseMII	CTCAG	1 cut(s)	240
BseNI	ACTGG	3 cut(s)	165, 185, 536
Bsh1285I	CGRYCG	1 cut(s)	461
BshFI	GGCC	1 cut(s)	34
BsiEI	CGRYCG	1 cut(s)	461
BsiHKAI	GWGCWC	2 cut(s)	156, 449
BsiHKCI	CYCGRG	2 cut(s)	334, 495
BsiSI	CCGG	1 cut(s)	272
BslI	CCNNNNNNNGG	4 cut(s)	41, 313, 373, 416
BsmAI	GTCTC	3 cut(s)	173, 229, 345
BsmBI	CGTCTC	1 cut(s)	229
BsnI	GGCC	1 cut(s)	34
Bso31I	GGTCTC	1 cut(s)	345
BsoBI	CYCGRG	2 cut(s)	334, 495
Bsp1286I	GDGCHC	2 cut(s)	156, 449
Bsp1407I	TGTACA	1 cut(s)	117
Bsp143I	GATC	8 cut(s)	10, 27, 37, 85, 189, 344, 458, 483
Bsp19I	CCATGG	1 cut(s)	325
BspACI	CCGC	4 cut(s)	250, 281, 420, 438
BspANI	GGCC	1 cut(s)	34
BspCNI	CTCAG	1 cut(s)	239
BspLI	GGNNCC	1 cut(s)	485
BspPI	GGATC	3 cut(s)	5, 478, 491
BspTNI	GGTCTC	1 cut(s)	345
BsrGI	TGTACA	1 cut(s)	117
BsrI	ACTGG	3 cut(s)	165, 185, 536
BssECI	CCNNGG	2 cut(s)	325, 415
BssMI	GATC	8 cut(s)	10, 27, 37, 85, 189, 344, 458, 483
BssNI	GRCGYC	1 cut(s)	199
BssSI	CACGAG	1 cut(s)	348
BssT1I	CCWWGG	1 cut(s)	325
Bst2BI	CACGAG	1 cut(s)	348
Bst6I	CTCTTC	2 cut(s)	180, 281
BstACI	GRCGYC	1 cut(s)	199
BstAUI	TGTACA	1 cut(s)	117
BstDEI	CTNAG	1 cut(s)	226
BstDSI	CCRYGG	2 cut(s)	325, 415
BstF5I	GGATG	3 cut(s)	301, 367, 512
BstH2I	RGCGCY	1 cut(s)	426
BstHHI	GCGC	2 cut(s)	69, 425
BstKTI	GATC	8 cut(s)	13, 30, 40, 88, 192, 347, 461, 486
BstMAI	GTCTC	3 cut(s)	173, 229, 345
BstMBI	GATC	8 cut(s)	10, 27, 37, 85, 189, 344, 458, 483
BstMCI	CGRYCG	1 cut(s)	461
BstMWI	GCNNNNNNNGC	2 cut(s)	130, 444
BstSFI	CTRYAG	1 cut(s)	501
BstX2I	RGATCY	1 cut(s)	483
BstYI	RGATCY	1 cut(s)	483
BsuRI	GGCC	1 cut(s)	34
BtgI	CCRYGG	2 cut(s)	325, 415
BtsCI	GGATG	3 cut(s)	301, 367, 512
BtsIMutI	CAGTG	1 cut(s)	192
CfoI	GCGC	2 cut(s)	69, 425
Cfr13I	GGNCC	1 cut(s)	475
CseI	GACGC	2 cut(s)	207, 288
Csp6I	GTAC	1 cut(s)	118
CviAII	CATG	1 cut(s)	326
CviQI	GTAC	1 cut(s)	118
DdeI	CTNAG	1 cut(s)	226
DpnI	GATC	8 cut(s)	12, 29, 39, 87, 191, 346, 460, 485
DpnII	GATC	8 cut(s)	10, 27, 37, 85, 189, 344, 458, 483
Eam1104I	CTCTTC	2 cut(s)	180, 281
EarI	CTCTTC	2 cut(s)	180, 281
Ecl136II	GAGCTC	1 cut(s)	447
Eco130I	CCWWGG	1 cut(s)	325
Eco147I	AGGCCT	1 cut(s)	34
Eco24I	GRGCYC	1 cut(s)	449
Eco31I	GGTCTC	1 cut(s)	345
Eco32I	GATATC	1 cut(s)	492
Eco47I	GGWCC	1 cut(s)	475
Eco53kI	GAGCTC	1 cut(s)	447
Eco88I	CYCGRG	2 cut(s)	334, 495
EcoICRI	GAGCTC	1 cut(s)	447
EcoRV	GATATC	1 cut(s)	492
EcoT14I	CCWWGG	1 cut(s)	325
EcoT38I	GRGCYC	1 cut(s)	449
ErhI	CCWWGG	1 cut(s)	325
Esp3I	CGTCTC	1 cut(s)	229
FaeI	CATG	1 cut(s)	329
FaiI	YATR	2 cut(s)	97, 327
FalI	AAGNNNNNCTT	4 cut(s)	47, 79, 98, 130
FatI	CATG	1 cut(s)	325
FbaI	TGATCA	3 cut(s)	27, 85, 189
Fnu4HI	GCNGC	2 cut(s)	421, 439
FokI	GGATG	3 cut(s)	308, 354, 519
FriOI	GRGCYC	1 cut(s)	449
Fsp4HI	GCNGC	2 cut(s)	421, 439
FspI	TGCGCA	1 cut(s)	68
GlaI	GCGC	2 cut(s)	68, 424
GluI	GCNGC	2 cut(s)	421, 439
GsuI	CTGGAG	3 cut(s)	148, 453, 463
HaeII	RGCGCY	1 cut(s)	426
HaeIII	GGCC	1 cut(s)	34
HapII	CCGG	1 cut(s)	272
HgaI	GACGC	2 cut(s)	207, 288
HhaI	GCGC	2 cut(s)	69, 425
Hin1I	GRCGYC	1 cut(s)	199
Hin1II	CATG	1 cut(s)	329
Hin6I	GCGC	2 cut(s)	67, 423
HinP1I	GCGC	2 cut(s)	67, 423
HinfI	GANTC	1 cut(s)	317
HpaII	CCGG	1 cut(s)	272
HphI	GGTGA	1 cut(s)	295
Hpy188I	TCNGA	4 cut(s)	90, 295, 393, 463
Hpy188III	TCNNGA	4 cut(s)	14, 348, 487, 495
Hpy99I	CGWCG	1 cut(s)	201
HpyAV	CCTTC	3 cut(s)	121, 220, 365
HpyF10VI	GCNNNNNNNGC	2 cut(s)	130, 444
HpyF3I	CTNAG	1 cut(s)	226
Hsp92I	GRCGYC	1 cut(s)	199
Hsp92II	CATG	1 cut(s)	329
HspAI	GCGC	2 cut(s)	67, 423
Ksp22I	TGATCA	3 cut(s)	27, 85, 189
Kzo9I	GATC	8 cut(s)	10, 27, 37, 85, 189, 344, 458, 483
LmnI	GCTCC	3 cut(s)	130, 444, 463
LweI	GCATC	1 cut(s)	286
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	8 cut(s)	12, 29, 39, 87, 191, 346, 460, 485
MboI	GATC	8 cut(s)	10, 27, 37, 85, 189, 344, 458, 483
MboII	GAAGA	2 cut(s)	167, 298
MflI	RGATCY	1 cut(s)	483
MhlI	GDGCHC	2 cut(s)	156, 449
MmeI	TCCRAC	2 cut(s)	273, 345
MnlI	CCTC	3 cut(s)	189, 282, 428
MspI	CCGG	1 cut(s)	272
MwoI	GCNNNNNNNGC	2 cut(s)	130, 444
NcoI	CCATGG	1 cut(s)	325
NdeII	GATC	8 cut(s)	10, 27, 37, 85, 189, 344, 458, 483
NlaIII	CATG	1 cut(s)	329
NlaIV	GGNNCC	1 cut(s)	485
NmuCI	GTSAC	1 cut(s)	259
NsbI	TGCGCA	1 cut(s)	68
PaeR7I	CTCGAG	2 cut(s)	334, 495
PceI	AGGCCT	1 cut(s)	34
PfeI	GAWTC	1 cut(s)	317
PkrI	GCNGC	2 cut(s)	422, 440
Ple19I	CGATCG	1 cut(s)	461
Psp124BI	GAGCTC	1 cut(s)	449
PspN4I	GGNNCC	1 cut(s)	485
PspPI	GGNCC	1 cut(s)	475
PspXI	VCTCGAGB	1 cut(s)	334
PsuI	RGATCY	1 cut(s)	483
PvuI	CGATCG	1 cut(s)	461
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
SacI	GAGCTC	1 cut(s)	449
SatI	GCNGC	2 cut(s)	421, 439
Sau3AI	GATC	8 cut(s)	10, 27, 37, 85, 189, 344, 458, 483
Sau96I	GGNCC	1 cut(s)	475
SduI	GDGCHC	2 cut(s)	156, 449
SfaNI	GCATC	1 cut(s)	286
SfcI	CTRYAG	1 cut(s)	501
Sfr274I	CTCGAG	2 cut(s)	334, 495
SinI	GGWCC	1 cut(s)	475
SlaI	CTCGAG	2 cut(s)	334, 495
SmlI	CTYRAG	2 cut(s)	334, 495
SmoI	CTYRAG	2 cut(s)	334, 495
SseBI	AGGCCT	1 cut(s)	34
SsiI	CCGC	4 cut(s)	250, 281, 420, 438
SstI	GAGCTC	1 cut(s)	449
StuI	AGGCCT	1 cut(s)	34
StyI	CCWWGG	1 cut(s)	325
TaqI	TCGA	4 cut(s)	150, 196, 335, 496
TatI	WGTACW	1 cut(s)	117
TauI	GCSGC	2 cut(s)	423, 441
TfiI	GAWTC	1 cut(s)	317
TscAI	CASTG	1 cut(s)	192
TseFI	GTSAC	1 cut(s)	259
Tsp45I	GTSAC	1 cut(s)	259
TspGWI	ACGGA	1 cut(s)	488
TspRI	CASTG	1 cut(s)	192
VpaK11BI	GGWCC	1 cut(s)	475
XcmI	CCANNNNNNNNNTGG	1 cut(s)	310
XhoI	CTCGAG	2 cut(s)	334, 495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.