Rmu_sc0000441.1_g000013

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000441.1
OG0031002
Physical Location & Seq
Reverse (-)
28035 .. 29029
995 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000441.1_g000013.1.cds

Sequence Viewer

Length: 594 bp
atgtttttgaggcgacatgttgatcctaacctacgctgggagtaccttcagttgaagacactcaaagaactgtgggatgcccttaagggactgttaccgcctgagccccggctcacccccagatcaccgctgaagtgctgccacacgctgcgccaagatagcatcagaagctgggaactgaagcacatcagtccaacatggaagagctcggcctctttcccacctataaaagaactgaccgttcagtggaatgaaatcctcttgcttgactacaaaagggttaatgacttcaataaggacatgttgcgcttaaagccacgtctcaatttatgtggaagagaaatcacagaagatgatatgatcgaaaatactctttccacttttcctacttcagcacttatactagcgaatcagtataggacgaagtatgacaacaaaggaatcacaacctttaataagctgatcaacctactgcaatcggctgagaggcaaaatgcagttctcttgaacaacaatggaaggcccactgggacgaagaaaattcctgagactaattatggaaaaatgaaaggtggaaagcaccccaatgcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

197

Amino Acids

22.94

Weight (kDa)

9.76

Isoelectric Point (pI)

56.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031002)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000441.1_g000013 Rmu_ssc0000100.1_g000023

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 98, 128
AclWI GGATC 1 cut(s) 17
AcsI RAATTY 1 cut(s) 540
AcuI CTGAAG 4 cut(s) 32, 152, 200, 375
AfaI GTAC 1 cut(s) 44
AfiI CCNNNNNNNGG 2 cut(s) 37, 246
AflII CTTAAG 1 cut(s) 83
AflIII ACRYGT 2 cut(s) 16, 300
AgsI TTSAA 3 cut(s) 55, 292, 508
AjiI CACGTC 1 cut(s) 320
AluBI AGCT 3 cut(s) 171, 207, 460
AluI AGCT 3 cut(s) 171, 207, 460
Alw21I GWGCWC 1 cut(s) 209
Alw26I GTCTC 2 cut(s) 326, 542
AlwI GGATC 1 cut(s) 17
AlwNI CAGNNNCTG 1 cut(s) 171
AoxI GGCC 2 cut(s) 210, 521
ApeKI GCWGC 2 cut(s) 138, 148
ApoI RAATTY 1 cut(s) 540
AspLEI GCGC 2 cut(s) 153, 309
AspS9I GGNCC 1 cut(s) 522
AsuC2I CCSGG 1 cut(s) 109
AsuHPI GGTGA 2 cut(s) 106, 117
BanII GRGCYC 2 cut(s) 108, 209
BbsI GAAGAC 1 cut(s) 62
Bbv12I GWGCWC 1 cut(s) 209
BbvI GCAGC 2 cut(s) 125, 135
BclI TGATCA 1 cut(s) 462
BcnI CCSGG 1 cut(s) 109
BcoDI GTCTC 2 cut(s) 326, 542
BfaI CTAG 1 cut(s) 404
BfrI CTTAAG 1 cut(s) 83
BisI GCNGC 2 cut(s) 139, 149
BlsI GCNGC 2 cut(s) 140, 150
Bme1390I CCNGG 1 cut(s) 109
BmgBI CACGTC 1 cut(s) 320
BmgT120I GGNCC 1 cut(s) 522
BmrFI CCNGG 1 cut(s) 109
BmrI ACTGGG 1 cut(s) 537
BmsI GCATC 2 cut(s) 67, 171
BmuI ACTGGG 1 cut(s) 537
BpiI GAAGAC 1 cut(s) 62
Bpu10I CCTNAGC 1 cut(s) 102
BpuMI CCSGG 1 cut(s) 109
BsaJI CCNNGG 1 cut(s) 107
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 246
Bse1I ACTGG 1 cut(s) 532
BseDI CCNNGG 1 cut(s) 107
BseGI GGATG 1 cut(s) 82
BseLI CCNNNNNNNGG 2 cut(s) 37, 246
BseMII CTCAG 3 cut(s) 93, 474, 537
BseNI ACTGG 1 cut(s) 532
BseXI GCAGC 2 cut(s) 125, 135
BseYI CCCAGC 2 cut(s) 36, 171
BshFI GGCC 2 cut(s) 212, 523
BsiHKAI GWGCWC 1 cut(s) 209
BsiSI CCGG 1 cut(s) 109
BslFI GGGAC 2 cut(s) 102, 544
BslI CCNNNNNNNGG 2 cut(s) 37, 246
BsmAI GTCTC 2 cut(s) 326, 542
BsmBI CGTCTC 1 cut(s) 326
BsmFI GGGAC 2 cut(s) 102, 544
BsnI GGCC 2 cut(s) 212, 523
Bsp1286I GDGCHC 2 cut(s) 108, 209
Bsp143I GATC 4 cut(s) 22, 122, 360, 462
BspACI CCGC 2 cut(s) 98, 128
BspANI GGCC 2 cut(s) 212, 523
BspCNI CTCAG 3 cut(s) 94, 475, 538
BspPI GGATC 1 cut(s) 17
BspQI GCTCTTC 1 cut(s) 197
BspTI CTTAAG 1 cut(s) 83
BsrI ACTGG 1 cut(s) 532
BssECI CCNNGG 1 cut(s) 107
BssMI GATC 4 cut(s) 22, 122, 360, 462
Bst4CI ACNGT 3 cut(s) 72, 93, 241
Bst6I CTCTTC 2 cut(s) 197, 331
BstAFI CTTAAG 1 cut(s) 83
BstDEI CTNAG 3 cut(s) 102, 483, 546
BstF5I GGATG 1 cut(s) 82
BstHHI GCGC 2 cut(s) 153, 309
BstKTI GATC 4 cut(s) 25, 125, 363, 465
BstMAI GTCTC 2 cut(s) 326, 542
BstMBI GATC 4 cut(s) 22, 122, 360, 462
BstMWI GCNNNNNNNGC 3 cut(s) 159, 168, 313
BstNSI RCATGY 2 cut(s) 20, 304
BstSCI CCNGG 1 cut(s) 107
BstV1I GCAGC 2 cut(s) 125, 135
BstV2I GAAGAC 1 cut(s) 62
BsuRI GGCC 2 cut(s) 212, 523
BtrI CACGTC 1 cut(s) 320
BtsCI GGATG 1 cut(s) 82
BtsIMutI CAGTG 2 cut(s) 251, 525
CaiI CAGNNNCTG 1 cut(s) 171
CfoI GCGC 2 cut(s) 153, 309
Cfr13I GGNCC 1 cut(s) 522
Csp6I GTAC 1 cut(s) 43
CspCI CAANNNNNGTGG 2 cut(s) 313, 348
CviAII CATG 3 cut(s) 17, 198, 301
CviJI RGCY 9 cut(s) 106, 112, 171, 207, 212, 316, 460, 482, 523
CviKI_1 RGCY 9 cut(s) 106, 112, 171, 207, 212, 316, 460, 482, 523
CviQI GTAC 1 cut(s) 43
DdeI CTNAG 3 cut(s) 102, 483, 546
DpnI GATC 4 cut(s) 24, 124, 362, 464
DpnII GATC 4 cut(s) 22, 122, 360, 462
Eam1104I CTCTTC 2 cut(s) 197, 331
EarI CTCTTC 2 cut(s) 197, 331
Ecl136II GAGCTC 1 cut(s) 207
Eco24I GRGCYC 2 cut(s) 108, 209
Eco53kI GAGCTC 1 cut(s) 207
Eco57I CTGAAG 4 cut(s) 32, 152, 200, 375
EcoICRI GAGCTC 1 cut(s) 207
EcoT22I ATGCAT 1 cut(s) 592
EcoT38I GRGCYC 2 cut(s) 108, 209
Esp3I CGTCTC 1 cut(s) 326
FaeI CATG 3 cut(s) 20, 201, 304
FaqI GGGAC 2 cut(s) 102, 544
FatI CATG 3 cut(s) 16, 197, 300
FbaI TGATCA 1 cut(s) 462
Fnu4HI GCNGC 2 cut(s) 139, 149
FokI GGATG 1 cut(s) 89
FriOI GRGCYC 2 cut(s) 108, 209
Fsp4HI GCNGC 2 cut(s) 139, 149
FspBI CTAG 1 cut(s) 404
GlaI GCGC 2 cut(s) 152, 308
GluI GCNGC 2 cut(s) 139, 149
GsaI CCCAGC 2 cut(s) 40, 175
HaeIII GGCC 2 cut(s) 212, 523
HapII CCGG 1 cut(s) 109
HhaI GCGC 2 cut(s) 153, 309
Hin1II CATG 3 cut(s) 20, 201, 304
Hin6I GCGC 2 cut(s) 151, 307
HinP1I GCGC 2 cut(s) 151, 307
HinfI GANTC 2 cut(s) 409, 441
HpaII CCGG 1 cut(s) 109
HphI GGTGA 2 cut(s) 106, 117
Hpy188I TCNGA 1 cut(s) 167
Hpy188III TCNNGA 2 cut(s) 505, 545
HpyAV CCTTC 2 cut(s) 56, 513
HpyCH4III ACNGT 3 cut(s) 72, 93, 241
HpyCH4IV ACGT 1 cut(s) 319
HpyCH4V TGCA 3 cut(s) 475, 497, 590
HpyF10VI GCNNNNNNNGC 3 cut(s) 159, 168, 313
HpyF3I CTNAG 3 cut(s) 102, 483, 546
HpySE526I ACGT 1 cut(s) 319
Hsp92II CATG 3 cut(s) 20, 201, 304
HspAI GCGC 2 cut(s) 151, 307
Ksp22I TGATCA 1 cut(s) 462
Kzo9I GATC 4 cut(s) 22, 122, 360, 462
LguI GCTCTTC 1 cut(s) 197
LpnPI CCDG 7 cut(s) 22, 114, 122, 133, 157, 513, 558
Lsp1109I GCAGC 2 cut(s) 125, 135
LweI GCATC 2 cut(s) 67, 171
MaeI CTAG 1 cut(s) 404
MaeII ACGT 1 cut(s) 319
MaeIII GTNAC 1 cut(s) 93
MalI GATC 4 cut(s) 24, 124, 362, 464
MboI GATC 4 cut(s) 22, 122, 360, 462
MboII GAAGA 5 cut(s) 67, 214, 348, 362, 547
MhlI GDGCHC 2 cut(s) 108, 209
MluCI AATT 3 cut(s) 325, 540, 553
MmeI TCCRAC 1 cut(s) 218
MnlI CCTC 4 cut(s) 3, 223, 269, 480
Mph1103I ATGCAT 1 cut(s) 592
MseI TTAA 4 cut(s) 84, 282, 311, 453
MslI CAYNNNNRTG 1 cut(s) 585
MspA1I CMGCKG 1 cut(s) 130
MspCI CTTAAG 1 cut(s) 83
MspI CCGG 1 cut(s) 109
MspR9I CCNGG 1 cut(s) 109
MwoI GCNNNNNNNGC 3 cut(s) 159, 168, 313
NciI CCSGG 1 cut(s) 109
NdeII GATC 4 cut(s) 22, 122, 360, 462
NlaIII CATG 3 cut(s) 20, 201, 304
NmeAIII GCCGAG 1 cut(s) 188
NsiI ATGCAT 1 cut(s) 592
NspI RCATGY 2 cut(s) 20, 304
PciI ACATGT 2 cut(s) 16, 300
PciSI GCTCTTC 1 cut(s) 197
PfeI GAWTC 2 cut(s) 409, 441
PkrI GCNGC 2 cut(s) 140, 150
PscI ACATGT 2 cut(s) 16, 300
Psp124BI GAGCTC 1 cut(s) 209
PspFI CCCAGC 2 cut(s) 36, 171
PspPI GGNCC 1 cut(s) 522
PstNI CAGNNNCTG 1 cut(s) 171
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
RseI CAYNNNNRTG 1 cut(s) 585
SacI GAGCTC 1 cut(s) 209
SapI GCTCTTC 1 cut(s) 197
SaqAI TTAA 4 cut(s) 84, 282, 311, 453
SatI GCNGC 2 cut(s) 139, 149
Sau3AI GATC 4 cut(s) 22, 122, 360, 462
Sau96I GGNCC 1 cut(s) 522
ScrFI CCNGG 1 cut(s) 109
SduI GDGCHC 2 cut(s) 108, 209
SfaNI GCATC 2 cut(s) 67, 171
SmiMI CAYNNNNRTG 1 cut(s) 585
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
Sse9I AATT 3 cut(s) 325, 540, 553
SsiI CCGC 2 cut(s) 98, 128
SspMI CTAG 1 cut(s) 404
SstI GAGCTC 1 cut(s) 209
StyD4I CCNGG 1 cut(s) 107
TaaI ACNGT 3 cut(s) 72, 93, 241
TaiI ACGT 1 cut(s) 322
TaqI TCGA 1 cut(s) 363
TasI AATT 3 cut(s) 325, 540, 553
TfiI GAWTC 2 cut(s) 409, 441
Tru1I TTAA 4 cut(s) 84, 282, 311, 453
Tru9I TTAA 4 cut(s) 84, 282, 311, 453
TscAI CASTG 2 cut(s) 251, 532
TseI GCWGC 2 cut(s) 138, 148
TspDTI ATGAA 2 cut(s) 267, 581
TspRI CASTG 2 cut(s) 251, 532
Vha464I CTTAAG 1 cut(s) 83
XapI RAATTY 1 cut(s) 540
XceI RCATGY 2 cut(s) 20, 304
XspI CTAG 1 cut(s) 404
Zsp2I ATGCAT 1 cut(s) 592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.