Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000516.1

Orthogroup ID

OG0031077

Physical Location & Seq

Genomic Coordinates Forward (+)

2574 .. 3801

Gene Structure 1228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

atgctaacttggcgcggcgcgtggcggcgcgtcggtggcgatctggaggcggtccgacgccgaggctgtagcccgcctggcggtcacctatctagtggagggggtacttttgttgttagagctgtcattgcagcagcaagagcattgcctacttggtcagatgggggatgtgcctccaatccaagcatggaaatacgagcgataaaggaattagaggaagaatgccgacagatgcttgtcgagtttcctaccaactctaaggaataccaaaatatcctaggtaagcctgctatacggatcctcatttatggggaagttgtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

107

Amino Acids

11.67

Weight (kDa)

9.02

Isoelectric Point (pI)

57.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031077)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000516.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	15, 20, 30
AciI	CCGC	5 cut(s)	15, 25, 50, 74, 81
AclWI	GGATC	2 cut(s)	292, 305
AcyI	GRCGYC	1 cut(s)	58
AfaI	GTAC	1 cut(s)	106
AfiI	CCNNNNNNNGG	1 cut(s)	80
AjnI	CCWGG	1 cut(s)	76
AluBI	AGCT	1 cut(s)	122
AluI	AGCT	1 cut(s)	122
AlwI	GGATC	2 cut(s)	292, 305
ApeKI	GCWGC	2 cut(s)	131, 134
AspA2I	CCTAGG	1 cut(s)	277
AspLEI	GCGC	3 cut(s)	15, 20, 30
AspS9I	GGNCC	1 cut(s)	52
AsuHPI	GGTGA	1 cut(s)	77
AvaII	GGWCC	1 cut(s)	52
AvrII	CCTAGG	1 cut(s)	277
BaeI	ACNNNNGTAYC	2 cut(s)	96, 129
BamHI	GGATCC	1 cut(s)	297
BbvI	GCAGC	2 cut(s)	143, 146
BccI	CCATC	1 cut(s)	155
BciT130I	CCWGG	1 cut(s)	78
BfaI	CTAG	2 cut(s)	93, 278
BfmI	CTRYAG	1 cut(s)	67
BglI	GCCNNNNNGGC	1 cut(s)	78
BisI	GCNGC	4 cut(s)	16, 26, 132, 135
BlnI	CCTAGG	1 cut(s)	277
BlsI	GCNGC	4 cut(s)	17, 27, 133, 136
Bme1390I	CCNGG	1 cut(s)	78
Bme18I	GGWCC	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	52
BmiI	GGNNCC	1 cut(s)	299
BmrFI	CCNGG	1 cut(s)	78
BmsI	GCATC	1 cut(s)	222
BpmI	CTGGAG	1 cut(s)	65
BsaHI	GRCGYC	1 cut(s)	58
BsaJI	CCNNGG	2 cut(s)	61, 277
Bsc4I	CCNNNNNNNGG	1 cut(s)	80
Bse3DI	GCAATG	2 cut(s)	126, 143
BseBI	CCWGG	1 cut(s)	78
BseDI	CCNNGG	2 cut(s)	61, 277
BseGI	GGATG	1 cut(s)	173
BseLI	CCNNNNNNNGG	1 cut(s)	80
BseMI	GCAATG	2 cut(s)	126, 143
BseXI	GCAGC	2 cut(s)	143, 146
Bsh1236I	CGCG	3 cut(s)	15, 20, 30
BslI	CCNNNNNNNGG	1 cut(s)	80
BsmI	GAATGC	1 cut(s)	227
Bsp143I	GATC	2 cut(s)	40, 297
BspACI	CCGC	5 cut(s)	15, 25, 50, 74, 81
BspFNI	CGCG	3 cut(s)	15, 20, 30
BspLI	GGNNCC	1 cut(s)	299
BspPI	GGATC	2 cut(s)	292, 305
BsrDI	GCAATG	2 cut(s)	126, 143
BssECI	CCNNGG	2 cut(s)	61, 277
BssMI	GATC	2 cut(s)	40, 297
BssNI	GRCGYC	1 cut(s)	58
BssT1I	CCWWGG	1 cut(s)	277
Bst2UI	CCWGG	1 cut(s)	78
BstACI	GRCGYC	1 cut(s)	58
BstC8I	GCNNGC	2 cut(s)	74, 288
BstDEI	CTNAG	1 cut(s)	258
BstEII	GGTNACC	1 cut(s)	83
BstF5I	GGATG	1 cut(s)	173
BstFNI	CGCG	3 cut(s)	15, 20, 30
BstHHI	GCGC	3 cut(s)	15, 20, 30
BstKTI	GATC	2 cut(s)	43, 300
BstMBI	GATC	2 cut(s)	40, 297
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 36, 78, 128, 140
BstNI	CCWGG	1 cut(s)	78
BstPI	GGTNACC	1 cut(s)	83
BstSCI	CCNGG	1 cut(s)	76
BstSFI	CTRYAG	1 cut(s)	67
BstUI	CGCG	3 cut(s)	15, 20, 30
BstV1I	GCAGC	2 cut(s)	143, 146
BstX2I	RGATCY	1 cut(s)	297
BstYI	RGATCY	1 cut(s)	297
BtsCI	GGATG	1 cut(s)	173
Cac8I	GCNNGC	2 cut(s)	74, 288
CfoI	GCGC	3 cut(s)	15, 20, 30
Cfr13I	GGNCC	1 cut(s)	52
CpoI	CGGWCCG	1 cut(s)	52
CseI	GACGC	2 cut(s)	19, 66
Csp6I	GTAC	1 cut(s)	105
CspI	CGGWCCG	1 cut(s)	52
CviAII	CATG	1 cut(s)	187
CviJI	RGCY	4 cut(s)	66, 72, 122, 286
CviKI_1	RGCY	4 cut(s)	66, 72, 122, 286
CviQI	GTAC	1 cut(s)	105
DdeI	CTNAG	1 cut(s)	258
DpnI	GATC	2 cut(s)	42, 299
DpnII	GATC	2 cut(s)	40, 297
Eco130I	CCWWGG	1 cut(s)	277
Eco47I	GGWCC	1 cut(s)	52
Eco91I	GGTNACC	1 cut(s)	83
EcoO65I	GGTNACC	1 cut(s)	83
EcoRII	CCWGG	1 cut(s)	76
EcoT14I	CCWWGG	1 cut(s)	277
ErhI	CCWWGG	1 cut(s)	277
FaeI	CATG	1 cut(s)	190
FaiI	YATR	3 cut(s)	188, 293, 309
FatI	CATG	1 cut(s)	186
FauI	CCCGC	1 cut(s)	81
Fnu4HI	GCNGC	4 cut(s)	16, 26, 132, 135
FokI	GGATG	1 cut(s)	180
Fsp4HI	GCNGC	4 cut(s)	16, 26, 132, 135
FspBI	CTAG	2 cut(s)	93, 278
GlaI	GCGC	3 cut(s)	14, 19, 29
GluI	GCNGC	4 cut(s)	16, 26, 132, 135
GsuI	CTGGAG	1 cut(s)	65
HgaI	GACGC	2 cut(s)	19, 66
HhaI	GCGC	3 cut(s)	15, 20, 30
Hin1I	GRCGYC	1 cut(s)	58
Hin1II	CATG	1 cut(s)	190
Hin6I	GCGC	3 cut(s)	13, 18, 28
HinP1I	GCGC	3 cut(s)	13, 18, 28
HphI	GGTGA	1 cut(s)	77
Hpy188I	TCNGA	2 cut(s)	56, 160
Hpy188III	TCNNGA	1 cut(s)	44
Hpy99I	CGWCG	2 cut(s)	35, 60
HpyCH4V	TGCA	1 cut(s)	131
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 36, 78, 128, 140
HpyF3I	CTNAG	1 cut(s)	258
Hsp92I	GRCGYC	1 cut(s)	58
Hsp92II	CATG	1 cut(s)	190
HspAI	GCGC	3 cut(s)	13, 18, 28
Kzo9I	GATC	2 cut(s)	40, 297
LpnPI	CCDG	4 cut(s)	29, 63, 90, 300
Lsp1109I	GCAGC	2 cut(s)	143, 146
LweI	GCATC	1 cut(s)	222
MaeI	CTAG	2 cut(s)	93, 278
MaeIII	GTNAC	1 cut(s)	83
MalI	GATC	2 cut(s)	42, 299
MboI	GATC	2 cut(s)	40, 297
MboII	GAAGA	1 cut(s)	230
MflI	RGATCY	1 cut(s)	297
MluCI	AATT	1 cut(s)	209
MmeI	TCCRAC	1 cut(s)	79
MnlI	CCTC	6 cut(s)	40, 56, 92, 184, 208, 311
MseI	TTAA	1 cut(s)	322
MspR9I	CCNGG	1 cut(s)	78
MteI	GCGCNGCGC	1 cut(s)	16
Mva1269I	GAATGC	1 cut(s)	227
MvaI	CCWGG	1 cut(s)	78
MvnI	CGCG	3 cut(s)	15, 20, 30
MwoI	GCNNNNNNNGC	5 cut(s)	10, 36, 78, 128, 140
NdeII	GATC	2 cut(s)	40, 297
NlaIII	CATG	1 cut(s)	190
NlaIV	GGNNCC	1 cut(s)	299
NmeAIII	GCCGAG	1 cut(s)	86
NmuCI	GTSAC	1 cut(s)	83
PctI	GAATGC	1 cut(s)	227
PkrI	GCNGC	4 cut(s)	17, 27, 133, 136
Psp6I	CCWGG	1 cut(s)	76
PspEI	GGTNACC	1 cut(s)	83
PspGI	CCWGG	1 cut(s)	76
PspN4I	GGNNCC	1 cut(s)	299
PspPI	GGNCC	1 cut(s)	52
PsuI	RGATCY	1 cut(s)	297
RsaI	GTAC	1 cut(s)	106
RsaNI	GTAC	1 cut(s)	105
Rsr2I	CGGWCCG	1 cut(s)	52
RsrII	CGGWCCG	1 cut(s)	52
SaqAI	TTAA	1 cut(s)	322
SatI	GCNGC	4 cut(s)	16, 26, 132, 135
Sau3AI	GATC	2 cut(s)	40, 297
Sau96I	GGNCC	1 cut(s)	52
ScrFI	CCNGG	1 cut(s)	78
SetI	ASST	3 cut(s)	90, 124, 283
SfaNI	GCATC	1 cut(s)	222
SfcI	CTRYAG	1 cut(s)	67
SinI	GGWCC	1 cut(s)	52
Sse9I	AATT	1 cut(s)	209
SsiI	CCGC	5 cut(s)	15, 25, 50, 74, 81
SspMI	CTAG	2 cut(s)	93, 278
StyD4I	CCNGG	1 cut(s)	76
StyI	CCWWGG	1 cut(s)	277
TaqI	TCGA	1 cut(s)	240
TasI	AATT	1 cut(s)	209
TauI	GCSGC	2 cut(s)	18, 28
Tru1I	TTAA	1 cut(s)	322
Tru9I	TTAA	1 cut(s)	322
TseFI	GTSAC	1 cut(s)	83
TseI	GCWGC	2 cut(s)	131, 134
Tsp45I	GTSAC	1 cut(s)	83
TspGWI	ACGGA	1 cut(s)	310
VpaK11BI	GGWCC	1 cut(s)	52
XcmI	CCANNNNNNNNNTGG	1 cut(s)	184
XmaJI	CCTAGG	1 cut(s)	277
XspI	CTAG	2 cut(s)	93, 278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.