Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000526.1

Orthogroup ID

OG0023047

Physical Location & Seq

Genomic Coordinates Reverse (-)

49238 .. 49666

Gene Structure 429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000526.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

atggttgaaaaccgtcttgttggtatgaagagccgtggagtctatgaaactcctggaggcaccatcctattcgctgctgcacgagagttggagtccttaactttggatcgagaaacaatgcaagttaaagactcgcttgccctcaaatatgcagagctagtctatgcaggcaggtggttcgacccacttcgtgagtccatggatgcattcatggagaaaatctcggagacaacaacgggatcagtaactctaaagttgtacaagggttcgatcactgtaactagccgtaagagtccatatagcctgtataggcaagacatctcttcatttgagagcggagatgtgtatgatcaagccgatgcagctgggtttattaggctatatggtctccccatgagggtgcgggcaatgcttaaggaggggatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000050 GO:0000053 GO:0003674 GO:0003824 GO:0004055 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006575 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0019627 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:0071941 GO:0072350 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko01100 ko01110 ko01130 ko01230 ko05418 map00220 map00250 map01100 map01110 map01130 map01230 map05418

Pfam Domains

Protein Families

Arginosuc_synth

Protein Analysis

142

Amino Acids

15.96

Weight (kDa)

6.34

Isoelectric Point (pI)

26.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023047)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000526.1_g000012 Rmu_sc0014601.1_g000011 Rmu_sc0014601.1_g000012
rosa_roxburghii	Rroxscaffold_3G00264560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	162
Acc36I	ACCTGC	1 cut(s)	162
AccB1I	GGYRCC	1 cut(s)	59
AccBSI	CCGCTC	1 cut(s)	336
AciI	CCGC	2 cut(s)	336, 403
AclWI	GGATC	2 cut(s)	114, 247
AdeI	CACNNNGTG	1 cut(s)	191
AfaI	GTAC	1 cut(s)	260
AfiI	CCNNNNNNNGG	1 cut(s)	397
AflII	CTTAAG	1 cut(s)	413
AgsI	TTSAA	1 cut(s)	8
AjnI	CCWGG	1 cut(s)	52
AluBI	AGCT	2 cut(s)	157, 365
AluI	AGCT	2 cut(s)	157, 365
Alw26I	GTCTC	2 cut(s)	221, 392
AlwI	GGATC	2 cut(s)	114, 247
ApeKI	GCWGC	3 cut(s)	74, 77, 362
BanI	GGYRCC	1 cut(s)	59
BauI	CACGAG	1 cut(s)	81
BbvI	GCAGC	3 cut(s)	61, 64, 374
BccI	CCATC	1 cut(s)	71
BceAI	ACGGC	2 cut(s)	18, 270
BcgI	CGANNNNNNTGC	2 cut(s)	160, 194
BciT130I	CCWGG	1 cut(s)	54
BclI	TGATCA	1 cut(s)	349
BcoDI	GTCTC	2 cut(s)	221, 392
BfaI	CTAG	3 cut(s)	158, 282, 427
BfrI	CTTAAG	1 cut(s)	413
BfuAI	ACCTGC	1 cut(s)	162
BisI	GCNGC	3 cut(s)	75, 78, 363
BlsI	GCNGC	3 cut(s)	76, 79, 364
Bme1390I	CCNGG	1 cut(s)	54
BmiI	GGNNCC	1 cut(s)	61
BmrFI	CCNGG	1 cut(s)	54
BmsI	GCATC	2 cut(s)	193, 349
BplI	GAGNNNNNCTC	2 cut(s)	206, 238
BpmI	CTGGAG	1 cut(s)	75
BsaI	GGTCTC	1 cut(s)	392
BsaJI	CCNNGG	2 cut(s)	34, 198
Bsc4I	CCNNNNNNNGG	1 cut(s)	397
Bse3DI	GCAATG	1 cut(s)	414
BseBI	CCWGG	1 cut(s)	54
BseDI	CCNNGG	2 cut(s)	34, 198
BseGI	GGATG	2 cut(s)	63, 208
BseLI	CCNNNNNNNGG	1 cut(s)	397
BseMI	GCAATG	1 cut(s)	414
BseXI	GCAGC	3 cut(s)	61, 64, 374
BseYI	CCCAGC	1 cut(s)	365
BsgI	GTGCAG	1 cut(s)	63
BshNI	GGYRCC	1 cut(s)	59
BslI	CCNNNNNNNGG	1 cut(s)	397
BsmAI	GTCTC	2 cut(s)	221, 392
BsmI	GAATGC	1 cut(s)	206
Bso31I	GGTCTC	1 cut(s)	392
Bsp1407I	TGTACA	1 cut(s)	258
Bsp143I	GATC	5 cut(s)	106, 239, 270, 349, 423
Bsp19I	CCATGG	1 cut(s)	198
BspACI	CCGC	2 cut(s)	336, 403
BspLI	GGNNCC	1 cut(s)	61
BspMI	ACCTGC	1 cut(s)	162
BspPI	GGATC	2 cut(s)	114, 247
BspQI	GCTCTTC	1 cut(s)	23
BspT107I	GGYRCC	1 cut(s)	59
BspTI	CTTAAG	1 cut(s)	413
BspTNI	GGTCTC	1 cut(s)	392
BsrBI	CCGCTC	1 cut(s)	336
BsrDI	GCAATG	1 cut(s)	414
BsrGI	TGTACA	1 cut(s)	258
BssECI	CCNNGG	2 cut(s)	34, 198
BssMI	GATC	5 cut(s)	106, 239, 270, 349, 423
BssSI	CACGAG	1 cut(s)	81
BssT1I	CCWWGG	1 cut(s)	198
Bst2BI	CACGAG	1 cut(s)	81
Bst2UI	CCWGG	1 cut(s)	54
Bst4CI	ACNGT	2 cut(s)	14, 277
Bst6I	CTCTTC	2 cut(s)	23, 328
BstAFI	CTTAAG	1 cut(s)	413
BstAUI	TGTACA	1 cut(s)	258
BstC8I	GCNNGC	3 cut(s)	138, 169, 405
BstDSI	CCRYGG	2 cut(s)	34, 198
BstF5I	GGATG	2 cut(s)	63, 208
BstKTI	GATC	5 cut(s)	109, 242, 273, 352, 426
BstMAI	GTCTC	2 cut(s)	221, 392
BstMBI	GATC	5 cut(s)	106, 239, 270, 349, 423
BstMWI	GCNNNNNNNGC	2 cut(s)	362, 409
BstNI	CCWGG	1 cut(s)	54
BstSCI	CCNGG	1 cut(s)	52
BstV1I	GCAGC	3 cut(s)	61, 64, 374
BstX2I	RGATCY	1 cut(s)	423
BstYI	RGATCY	1 cut(s)	423
BtgI	CCRYGG	2 cut(s)	34, 198
BtsCI	GGATG	2 cut(s)	63, 208
BtsIMutI	CAGTG	1 cut(s)	273
BveI	ACCTGC	1 cut(s)	162
Cac8I	GCNNGC	3 cut(s)	138, 169, 405
Csp6I	GTAC	1 cut(s)	259
CviAII	CATG	3 cut(s)	199, 211, 394
CviJI	RGCY	7 cut(s)	33, 157, 285, 303, 356, 365, 379
CviKI_1	RGCY	7 cut(s)	33, 157, 285, 303, 356, 365, 379
CviQI	GTAC	1 cut(s)	259
DpnI	GATC	5 cut(s)	108, 241, 272, 351, 425
DpnII	GATC	5 cut(s)	106, 239, 270, 349, 423
DraIII	CACNNNGTG	1 cut(s)	191
Eam1104I	CTCTTC	2 cut(s)	23, 328
EarI	CTCTTC	2 cut(s)	23, 328
Eco130I	CCWWGG	1 cut(s)	198
Eco31I	GGTCTC	1 cut(s)	392
EcoRII	CCWGG	1 cut(s)	52
EcoT14I	CCWWGG	1 cut(s)	198
EcoT22I	ATGCAT	1 cut(s)	208
ErhI	CCWWGG	1 cut(s)	198
FaeI	CATG	3 cut(s)	202, 214, 397
FalI	AAGNNNNNCTT	2 cut(s)	120, 152
FatI	CATG	3 cut(s)	198, 210, 393
FauI	CCCGC	1 cut(s)	396
FbaI	TGATCA	1 cut(s)	349
Fnu4HI	GCNGC	3 cut(s)	75, 78, 363
FokI	GGATG	2 cut(s)	50, 215
Fsp4HI	GCNGC	3 cut(s)	75, 78, 363
FspBI	CTAG	3 cut(s)	158, 282, 427
GluI	GCNGC	3 cut(s)	75, 78, 363
GsaI	CCCAGC	1 cut(s)	369
GsuI	CTGGAG	1 cut(s)	75
Hin1II	CATG	3 cut(s)	202, 214, 397
HinfI	GANTC	5 cut(s)	39, 92, 131, 194, 292
Hpy188I	TCNGA	1 cut(s)	226
Hpy188III	TCNNGA	2 cut(s)	110, 191
HpyCH4III	ACNGT	2 cut(s)	14, 277
HpyCH4V	TGCA	6 cut(s)	80, 121, 152, 167, 206, 362
HpyF10VI	GCNNNNNNNGC	2 cut(s)	362, 409
Hsp92II	CATG	3 cut(s)	202, 214, 397
Ksp22I	TGATCA	1 cut(s)	349
Kzo9I	GATC	5 cut(s)	106, 239, 270, 349, 423
LguI	GCTCTTC	1 cut(s)	23
LpnPI	CCDG	6 cut(s)	39, 66, 153, 157, 317, 351
Lsp1109I	GCAGC	3 cut(s)	61, 64, 374
LweI	GCATC	2 cut(s)	193, 349
MaeI	CTAG	3 cut(s)	158, 282, 427
MaeIII	GTNAC	2 cut(s)	244, 277
MalI	GATC	5 cut(s)	108, 241, 272, 351, 425
MbiI	CCGCTC	1 cut(s)	336
MboI	GATC	5 cut(s)	106, 239, 270, 349, 423
MboII	GAAGA	2 cut(s)	40, 315
MflI	RGATCY	1 cut(s)	423
MlyI	GAGTC	5 cut(s)	48, 101, 125, 203, 301
MmeI	TCCRAC	1 cut(s)	69
MnlI	CCTC	4 cut(s)	50, 152, 390, 412
Mph1103I	ATGCAT	1 cut(s)	208
MseI	TTAA	3 cut(s)	98, 126, 414
MslI	CAYNNNNRTG	1 cut(s)	398
MspA1I	CMGCKG	1 cut(s)	365
MspCI	CTTAAG	1 cut(s)	413
MspR9I	CCNGG	1 cut(s)	54
Mva1269I	GAATGC	1 cut(s)	206
MvaI	CCWGG	1 cut(s)	54
MwoI	GCNNNNNNNGC	2 cut(s)	362, 409
NcoI	CCATGG	1 cut(s)	198
NdeII	GATC	5 cut(s)	106, 239, 270, 349, 423
NlaIII	CATG	3 cut(s)	202, 214, 397
NlaIV	GGNNCC	1 cut(s)	61
NsiI	ATGCAT	1 cut(s)	208
PaqCI	CACCTGC	1 cut(s)	162
PciSI	GCTCTTC	1 cut(s)	23
PctI	GAATGC	1 cut(s)	206
PfoI	TCCNGGA	1 cut(s)	52
PkrI	GCNGC	3 cut(s)	76, 79, 364
PleI	GAGTC	5 cut(s)	47, 100, 125, 202, 300
PpsI	GAGTC	5 cut(s)	47, 100, 125, 202, 300
Psp6I	CCWGG	1 cut(s)	52
PspFI	CCCAGC	1 cut(s)	365
PspGI	CCWGG	1 cut(s)	52
PspN4I	GGNNCC	1 cut(s)	61
PsuI	RGATCY	1 cut(s)	423
PvuII	CAGCTG	1 cut(s)	365
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
RseI	CAYNNNNRTG	1 cut(s)	398
SapI	GCTCTTC	1 cut(s)	23
SaqAI	TTAA	3 cut(s)	98, 126, 414
SatI	GCNGC	3 cut(s)	75, 78, 363
Sau3AI	GATC	5 cut(s)	106, 239, 270, 349, 423
SchI	GAGTC	5 cut(s)	48, 101, 125, 203, 301
ScrFI	CCNGG	1 cut(s)	54
SetI	ASST	3 cut(s)	159, 176, 367
SfaNI	GCATC	2 cut(s)	193, 349
SmiMI	CAYNNNNRTG	1 cut(s)	398
SmlI	CTYRAG	1 cut(s)	413
SmoI	CTYRAG	1 cut(s)	413
SsiI	CCGC	2 cut(s)	336, 403
SspMI	CTAG	3 cut(s)	158, 282, 427
StyD4I	CCNGG	1 cut(s)	52
StyI	CCWWGG	1 cut(s)	198
TaaI	ACNGT	2 cut(s)	14, 277
TaqI	TCGA	3 cut(s)	109, 180, 269
TatI	WGTACW	1 cut(s)	258
Tru1I	TTAA	3 cut(s)	98, 126, 414
Tru9I	TTAA	3 cut(s)	98, 126, 414
TscAI	CASTG	1 cut(s)	280
TseI	GCWGC	3 cut(s)	74, 77, 362
TspDTI	ATGAA	4 cut(s)	41, 60, 199, 315
TspRI	CASTG	1 cut(s)	280
Vha464I	CTTAAG	1 cut(s)	413
XspI	CTAG	3 cut(s)	158, 282, 427
Zsp2I	ATGCAT	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.