Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000543.1

Orthogroup ID

OG0024691

Physical Location & Seq

Genomic Coordinates Forward (+)

247579 .. 248933

Gene Structure 1355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

atgcacgggaaagtgagcttttgcatcctaatggtggctggaagctccccttgttctaatgctcattcgaccaagctgaagctaacattattgcaagtatcccctcttggagatggaaggaatgaagactgtcttagatggttctgcgagaaagatggaaaatactcggtgagctctggatataaggtagctttgggtgcctttttttattttgggataggaagaagaagttttggaacagagttggacgtatcaacattattgtcattggggtgcactagaaggattagtttatcattggagtgcattatttttagtgaccaaggggtaccagcttcctttaatgtccctgctggagcagtgataccatttggctctatggaactggcattagagcaaagcaaatccatggaatcattcaggtcctttctaaatatgatagaaacattgaagccagaaagtggagaacttgaccaagtatgtggtcagctccaggaactgatctcttctctacagccctccaaagatatcattgatagaatagccaaaatatttccaggcaatgcgcggctaattgttcgttcaagtgctaatgttgaggacttagctggaatgtcggctgctggactatatgattcaattcccaatgttagtgtttcaaatccgacagtatttgcaaattctataagcaaagtgtgggcatcactttatactaggagggcagttttgagccgtcgagttgccggtgtacctcagaaggatgctacaatggcaattctggtgcaagaaatgctttcaccagacttatcgtttgtgcttcatacagtcagcccaacagaccaagaccataatttggttgaggctgaaattgcttctggcctcggtgaaactttggcttcaggcaccaggggcacaccctggcgtatatcgtctggaaaatttgatgggaatgtgcgcacattggcatttgctaatttcagtgaggaactacttggtggaggccctgcagacggggaggttatccatttgactgtagactacagcaagaaaccattaactgttgatccagttttccgtcggcagcttggtcagcgcctcggtgcagtgggatttttccttgagcagaagttcggctgcccacaggatgtggaaggatgtgttgttggcaaagacatctttatagtccagacacgtccacagcctctataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016052 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016781 GO:0019200 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044267 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0046835 GO:0051752 GO:0071704 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM_20 PPDK_N

Protein Analysis

402

Amino Acids

43.43

Weight (kDa)

6.03

Isoelectric Point (pI)

49.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPDK_N	PF01326	114 - 400	2.6e-31	Pyruvate phosphate dikinase, AMP/ATP-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024691)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g29350
rosa_multiflora	Rmu_sc0000543.1_g000029 Rmu_sc0000543.1_g000050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	956
Acc65I	GGTACC	1 cut(s)	328
AccB1I	GGYRCC	3 cut(s)	197, 328, 902
AccB7I	CCANNNNNTGG	2 cut(s)	461, 853
AccI	GTMKAC	1 cut(s)	1035
AccII	CGCG	1 cut(s)	568
AciI	CCGC	1 cut(s)	568
AclWI	GGATC	1 cut(s)	1058
AcsI	RAATTY	2 cut(s)	679, 938
AcuI	CTGAAG	2 cut(s)	98, 882
AfaI	GTAC	2 cut(s)	330, 750
AfiI	CCNNNNNNNGG	4 cut(s)	34, 461, 853, 1010
AflIII	ACRYGT	1 cut(s)	1190
AgsI	TTSAA	4 cut(s)	451, 585, 639, 660
AjiI	CACGTC	1 cut(s)	1193
AjnI	CCWGG	4 cut(s)	492, 556, 905, 917
Alw21I	GWGCWC	2 cut(s)	176, 278
Alw44I	GTGCAC	1 cut(s)	274
AlwI	GGATC	1 cut(s)	1058
AlwNI	CAGNNNCTG	1 cut(s)	499
AoxI	GGCC	2 cut(s)	877, 1000
ApaLI	GTGCAC	1 cut(s)	274
ApeKI	GCWGC	3 cut(s)	620, 1081, 1134
ApoI	RAATTY	2 cut(s)	679, 938
ArsI	GACNNNNNNTTYG	2 cut(s)	794, 826
Asp718I	GGTACC	1 cut(s)	328
AspLEI	GCGC	3 cut(s)	568, 957, 1095
AspS9I	GGNCC	2 cut(s)	423, 1001
AsuHPI	GGTGA	3 cut(s)	181, 789, 896
AvaII	GGWCC	1 cut(s)	423
BaeGI	GKGCMC	2 cut(s)	278, 914
BanI	GGYRCC	3 cut(s)	197, 328, 902
BanII	GRGCYC	1 cut(s)	176
BbsI	GAAGAC	1 cut(s)	132
Bbv12I	GWGCWC	2 cut(s)	176, 278
BbvI	GCAGC	3 cut(s)	607, 1093, 1121
BccI	CCATC	4 cut(s)	107, 132, 149, 938
BceAI	ACGGC	1 cut(s)	717
BciT130I	CCWGG	4 cut(s)	494, 558, 907, 919
BciVI	GTATCC	1 cut(s)	109
BfaI	CTAG	2 cut(s)	279, 714
BfmI	CTRYAG	4 cut(s)	512, 1005, 1032, 1039
BfoI	RGCGCY	1 cut(s)	1096
BfuI	GTATCC	1 cut(s)	109
BisI	GCNGC	4 cut(s)	569, 621, 1082, 1135
BlsI	GCNGC	4 cut(s)	570, 622, 1083, 1136
Bme1390I	CCNGG	4 cut(s)	494, 558, 907, 919
Bme18I	GGWCC	1 cut(s)	423
BmgBI	CACGTC	1 cut(s)	1193
BmgT120I	GGNCC	2 cut(s)	423, 1001
BmiI	GGNNCC	3 cut(s)	199, 330, 904
BmrFI	CCNGG	4 cut(s)	494, 558, 907, 919
BmsI	GCATC	3 cut(s)	33, 710, 751
BpiI	GAAGAC	1 cut(s)	132
BpmI	CTGGAG	2 cut(s)	375, 476
BpuEI	CTTGAG	1 cut(s)	1139
BsaJI	CCNNGG	6 cut(s)	322, 408, 880, 906, 917, 1096
Bsc4I	CCNNNNNNNGG	4 cut(s)	34, 461, 853, 1010
Bse118I	RCCGGY	1 cut(s)	743
Bse1I	ACTGG	2 cut(s)	390, 1067
Bse3DI	GCAATG	1 cut(s)	568
BseBI	CCWGG	4 cut(s)	494, 558, 907, 919
BseDI	CCNNGG	6 cut(s)	322, 408, 880, 906, 917, 1096
BseGI	GGATG	4 cut(s)	24, 766, 1150, 1160
BseLI	CCNNNNNNNGG	4 cut(s)	34, 461, 853, 1010
BseMI	GCAATG	1 cut(s)	568
BseMII	CTCAG	1 cut(s)	767
BseNI	ACTGG	2 cut(s)	390, 1067
BseSI	GKGCMC	2 cut(s)	278, 914
BseXI	GCAGC	3 cut(s)	607, 1093, 1121
BsgI	GTGCAG	1 cut(s)	1122
Bsh1236I	CGCG	1 cut(s)	568
BshFI	GGCC	2 cut(s)	879, 1002
BshNI	GGYRCC	3 cut(s)	197, 328, 902
BsiHKAI	GWGCWC	2 cut(s)	176, 278
BsiSI	CCGG	1 cut(s)	744
BslFI	GGGAC	1 cut(s)	332
BslI	CCNNNNNNNGG	4 cut(s)	34, 461, 853, 1010
BsmFI	GGGAC	1 cut(s)	332
BsnI	GGCC	2 cut(s)	879, 1002
Bsp1286I	GDGCHC	3 cut(s)	176, 278, 914
Bsp143I	GATC	2 cut(s)	501, 1063
Bsp19I	CCATGG	1 cut(s)	408
BspACI	CCGC	1 cut(s)	568
BspANI	GGCC	2 cut(s)	879, 1002
BspCNI	CTCAG	1 cut(s)	766
BspFNI	CGCG	1 cut(s)	568
BspLI	GGNNCC	3 cut(s)	199, 330, 904
BspMAI	CTGCAG	1 cut(s)	1009
BspPI	GGATC	1 cut(s)	1058
BspT107I	GGYRCC	3 cut(s)	197, 328, 902
BsrDI	GCAATG	1 cut(s)	568
BsrFI	RCCGGY	1 cut(s)	743
BsrI	ACTGG	2 cut(s)	390, 1067
BssAI	RCCGGY	1 cut(s)	743
BssECI	CCNNGG	6 cut(s)	322, 408, 880, 906, 917, 1096
BssMI	GATC	2 cut(s)	501, 1063
BssT1I	CCWWGG	2 cut(s)	322, 408
Bst2UI	CCWGG	4 cut(s)	494, 558, 907, 919
Bst4CI	ACNGT	5 cut(s)	131, 670, 826, 1033, 1060
Bst6I	CTCTTC	1 cut(s)	511
BstAPI	GCANNNNNTGC	1 cut(s)	790
BstDEI	CTNAG	3 cut(s)	134, 604, 753
BstDSI	CCRYGG	1 cut(s)	408
BstF5I	GGATG	4 cut(s)	24, 766, 1150, 1160
BstFNI	CGCG	1 cut(s)	568
BstH2I	RGCGCY	1 cut(s)	1096
BstHHI	GCGC	3 cut(s)	568, 957, 1095
BstKTI	GATC	2 cut(s)	504, 1066
BstMBI	GATC	2 cut(s)	501, 1063
BstMWI	GCNNNNNNNGC	6 cut(s)	197, 770, 790, 869, 909, 1090
BstNI	CCWGG	4 cut(s)	494, 558, 907, 919
BstSCI	CCNGG	4 cut(s)	492, 556, 905, 917
BstSFI	CTRYAG	4 cut(s)	512, 1005, 1032, 1039
BstSLI	GKGCMC	2 cut(s)	278, 914
BstUI	CGCG	1 cut(s)	568
BstV1I	GCAGC	3 cut(s)	607, 1093, 1121
BstV2I	GAAGAC	1 cut(s)	132
BstXI	CCANNNNNNTGG	1 cut(s)	482
BsuI	GTATCC	1 cut(s)	109
BsuRI	GGCC	2 cut(s)	879, 1002
BtgI	CCRYGG	1 cut(s)	408
BtrI	CACGTC	1 cut(s)	1193
BtsCI	GGATG	4 cut(s)	24, 766, 1150, 1160
BtsI	GCAGTG	2 cut(s)	366, 1110
BtsIMutI	CAGTG	3 cut(s)	366, 985, 1110
CaiI	CAGNNNCTG	1 cut(s)	499
CfoI	GCGC	3 cut(s)	568, 957, 1095
Cfr10I	RCCGGY	1 cut(s)	743
Cfr13I	GGNCC	2 cut(s)	423, 1001
Csp6I	GTAC	2 cut(s)	329, 749
CviAII	CATG	1 cut(s)	409
CviQI	GTAC	2 cut(s)	329, 749
DdeI	CTNAG	3 cut(s)	134, 604, 753
DpnI	GATC	2 cut(s)	503, 1065
DpnII	GATC	2 cut(s)	501, 1063
Eam1104I	CTCTTC	1 cut(s)	511
EarI	CTCTTC	1 cut(s)	511
Ecl136II	GAGCTC	1 cut(s)	174
Eco130I	CCWWGG	2 cut(s)	322, 408
Eco24I	GRGCYC	1 cut(s)	176
Eco32I	GATATC	1 cut(s)	529
Eco47I	GGWCC	1 cut(s)	423
Eco53kI	GAGCTC	1 cut(s)	174
Eco57I	CTGAAG	2 cut(s)	98, 882
EcoICRI	GAGCTC	1 cut(s)	174
EcoO109I	RGGNCCY	2 cut(s)	423, 1001
EcoRII	CCWGG	4 cut(s)	492, 556, 905, 917
EcoRV	GATATC	1 cut(s)	529
EcoT14I	CCWWGG	2 cut(s)	322, 408
EcoT38I	GRGCYC	1 cut(s)	176
ErhI	CCWWGG	2 cut(s)	322, 408
FaeI	CATG	1 cut(s)	412
FalI	AAGNNNNNCTT	6 cut(s)	34, 66, 117, 149, 777, 809
FaqI	GGGAC	1 cut(s)	332
FatI	CATG	1 cut(s)	408
FblI	GTMKAC	1 cut(s)	1035
Fnu4HI	GCNGC	4 cut(s)	569, 621, 1082, 1135
FokI	GGATG	4 cut(s)	11, 773, 1157, 1167
FriOI	GRGCYC	1 cut(s)	176
Fsp4HI	GCNGC	4 cut(s)	569, 621, 1082, 1135
FspAI	RTGCGCAY	1 cut(s)	956
FspBI	CTAG	2 cut(s)	279, 714
FspI	TGCGCA	1 cut(s)	956
GlaI	GCGC	3 cut(s)	567, 956, 1094
GluI	GCNGC	4 cut(s)	569, 621, 1082, 1135
GsuI	CTGGAG	2 cut(s)	375, 476
HaeII	RGCGCY	1 cut(s)	1096
HaeIII	GGCC	2 cut(s)	879, 1002
HapII	CCGG	1 cut(s)	744
HhaI	GCGC	3 cut(s)	568, 957, 1095
Hin1II	CATG	1 cut(s)	412
Hin6I	GCGC	3 cut(s)	566, 955, 1093
HinP1I	GCGC	3 cut(s)	566, 955, 1093
HinfI	GANTC	2 cut(s)	413, 635
HpaII	CCGG	1 cut(s)	744
HphI	GGTGA	3 cut(s)	181, 789, 896
Hpy166II	GTNNAC	4 cut(s)	276, 749, 1036, 1196
Hpy188I	TCNGA	2 cut(s)	666, 756
Hpy188III	TCNNGA	3 cut(s)	177, 933, 1186
Hpy8I	GTNNAC	4 cut(s)	276, 749, 1036, 1196
Hpy99I	CGWCG	2 cut(s)	738, 1080
HpyAV	CCTTC	4 cut(s)	111, 276, 751, 1145
HpyCH4III	ACNGT	5 cut(s)	131, 670, 826, 1033, 1060
HpyCH4IV	ACGT	2 cut(s)	249, 1192
HpyCH4V	TGCA	9 cut(s)	4, 24, 94, 276, 306, 677, 784, 1007, 1103
HpyF10VI	GCNNNNNNNGC	6 cut(s)	197, 770, 790, 869, 909, 1090
HpyF3I	CTNAG	3 cut(s)	134, 604, 753
HpySE526I	ACGT	2 cut(s)	249, 1192
Hsp92II	CATG	1 cut(s)	412
HspAI	GCGC	3 cut(s)	566, 955, 1093
KpnI	GGTACC	1 cut(s)	332
Kzo9I	GATC	2 cut(s)	501, 1063
LmnI	GCTCC	3 cut(s)	50, 356, 495
Lsp1109I	GCAGC	3 cut(s)	607, 1093, 1121
LweI	GCATC	3 cut(s)	33, 710, 751
MaeI	CTAG	2 cut(s)	279, 714
MaeII	ACGT	2 cut(s)	249, 1192
MaeIII	GTNAC	1 cut(s)	317
MalI	GATC	2 cut(s)	503, 1065
MboI	GATC	2 cut(s)	501, 1063
MboII	GAAGA	4 cut(s)	137, 234, 237, 498
MhlI	GDGCHC	3 cut(s)	176, 278, 914
MluCI	AATT	8 cut(s)	573, 639, 679, 774, 850, 867, 938, 973
MmeI	TCCRAC	2 cut(s)	225, 689
MseI	TTAA	2 cut(s)	342, 1055
MslI	CAYNNNNRTG	3 cut(s)	29, 271, 301
MspI	CCGG	1 cut(s)	744
MspR9I	CCNGG	4 cut(s)	494, 558, 907, 919
MvaI	CCWGG	4 cut(s)	494, 558, 907, 919
MvnI	CGCG	1 cut(s)	568
MwoI	GCNNNNNNNGC	6 cut(s)	197, 770, 790, 869, 909, 1090
NcoI	CCATGG	1 cut(s)	408
NdeII	GATC	2 cut(s)	501, 1063
NlaIII	CATG	1 cut(s)	412
NlaIV	GGNNCC	3 cut(s)	199, 330, 904
NmuCI	GTSAC	1 cut(s)	317
NsbI	TGCGCA	1 cut(s)	956
PfeI	GAWTC	2 cut(s)	413, 635
PflMI	CCANNNNNTGG	2 cut(s)	461, 853
PfoI	TCCNGGA	1 cut(s)	492
PkrI	GCNGC	4 cut(s)	570, 622, 1083, 1136
PpuMI	RGGWCCY	1 cut(s)	423
Psp124BI	GAGCTC	1 cut(s)	176
Psp5II	RGGWCCY	1 cut(s)	423
Psp6I	CCWGG	4 cut(s)	492, 556, 905, 917
PspGI	CCWGG	4 cut(s)	492, 556, 905, 917
PspN4I	GGNNCC	3 cut(s)	199, 330, 904
PspPI	GGNCC	2 cut(s)	423, 1001
PspPPI	RGGWCCY	1 cut(s)	423
PstI	CTGCAG	1 cut(s)	1009
PstNI	CAGNNNCTG	1 cut(s)	499
RsaI	GTAC	2 cut(s)	330, 750
RsaNI	GTAC	2 cut(s)	329, 749
RseI	CAYNNNNRTG	3 cut(s)	29, 271, 301
SacI	GAGCTC	1 cut(s)	176
SaqAI	TTAA	2 cut(s)	342, 1055
SatI	GCNGC	4 cut(s)	569, 621, 1082, 1135
Sau3AI	GATC	2 cut(s)	501, 1063
Sau96I	GGNCC	2 cut(s)	423, 1001
ScrFI	CCNGG	4 cut(s)	494, 558, 907, 919
SduI	GDGCHC	3 cut(s)	176, 278, 914
SfaNI	GCATC	3 cut(s)	33, 710, 751
SfcI	CTRYAG	4 cut(s)	512, 1005, 1032, 1039
SinI	GGWCC	1 cut(s)	423
SmiMI	CAYNNNNRTG	3 cut(s)	29, 271, 301
SmlI	CTYRAG	1 cut(s)	1118
SmoI	CTYRAG	1 cut(s)	1118
Sse9I	AATT	8 cut(s)	573, 639, 679, 774, 850, 867, 938, 973
SsiI	CCGC	1 cut(s)	568
SspI	AATATT	1 cut(s)	552
SspMI	CTAG	2 cut(s)	279, 714
SstI	GAGCTC	1 cut(s)	176
StyD4I	CCNGG	4 cut(s)	492, 556, 905, 917
StyI	CCWWGG	2 cut(s)	322, 408
TaaI	ACNGT	5 cut(s)	131, 670, 826, 1033, 1060
TaiI	ACGT	2 cut(s)	252, 1195
TaqI	TCGA	2 cut(s)	68, 736
TasI	AATT	8 cut(s)	573, 639, 679, 774, 850, 867, 938, 973
TauI	GCSGC	1 cut(s)	571
TfiI	GAWTC	2 cut(s)	413, 635
Tru1I	TTAA	2 cut(s)	342, 1055
Tru9I	TTAA	2 cut(s)	342, 1055
TscAI	CASTG	3 cut(s)	366, 985, 1110
TseFI	GTSAC	1 cut(s)	317
TseI	GCWGC	3 cut(s)	620, 1081, 1134
Tsp45I	GTSAC	1 cut(s)	317
TspDTI	ATGAA	2 cut(s)	138, 809
TspGWI	ACGGA	1 cut(s)	1064
TspRI	CASTG	3 cut(s)	366, 985, 1110
Van91I	CCANNNNNTGG	2 cut(s)	461, 853
VneI	GTGCAC	1 cut(s)	274
VpaK11BI	GGWCC	1 cut(s)	423
XapI	RAATTY	2 cut(s)	679, 938
XmiI	GTMKAC	1 cut(s)	1035
XspI	CTAG	2 cut(s)	279, 714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.