Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000562.1

Orthogroup ID

OG0031082

Physical Location & Seq

Genomic Coordinates Forward (+)

18622 .. 18855

Gene Structure 234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

atggcagagctaaccactcccatggacatcgacggcgacgataccaacccctctctaaaacccaacaacaagggcaaaaacgtcgccgtttccggcccctcccacggcaaagccactccctgggtcgagaagtaccgccctcagtccctcgccgacgtcgccgctcaccgcgacattgtcgacaccagtaagcaattcccactccctgcaactaaagatttcacctttatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031348 GO:0031390 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048585 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051338 GO:0051347 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0080134 GO:0090304 GO:0090329 GO:1900262 GO:1900264 GO:1901360 GO:1901576 GO:2000112 GO:2000278 GO:2000573

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 map03030 map03420 map03430

Pfam Domains

Protein Families

AAA Rep_fac_C

Protein Analysis

77

Amino Acids

8.4

Weight (kDa)

6.02

Isoelectric Point (pI)

17.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031082)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000562.1_g000003 Rmu_sc0043128.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	159
AccB7I	CCANNNNNTGG	1 cut(s)	120
AccBSI	CCGCTC	1 cut(s)	164
AccI	GTMKAC	1 cut(s)	180
AccII	CGCG	1 cut(s)	171
AciI	CCGC	3 cut(s)	136, 162, 169
AcyI	GRCGYC	1 cut(s)	156
AfaI	GTAC	1 cut(s)	134
AfiI	CCNNNNNNNGG	2 cut(s)	104, 120
AjnI	CCWGG	1 cut(s)	119
AluBI	AGCT	1 cut(s)	10
AluI	AGCT	1 cut(s)	10
AoxI	GGCC	1 cut(s)	94
AspS9I	GGNCC	1 cut(s)	95
AsuHPI	GGTGA	2 cut(s)	158, 214
BceAI	ACGGC	3 cut(s)	49, 71, 121
BcgI	CGANNNNNNTGC	2 cut(s)	64, 98
BciT130I	CCWGG	1 cut(s)	121
BisI	GCNGC	1 cut(s)	162
BlsI	GCNGC	1 cut(s)	163
Bme1390I	CCNGG	1 cut(s)	121
BmgT120I	GGNCC	1 cut(s)	95
BmiI	GGNNCC	1 cut(s)	97
BmrFI	CCNGG	1 cut(s)	121
BsaHI	GRCGYC	1 cut(s)	156
BsaJI	CCNNGG	4 cut(s)	21, 103, 119, 120
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 120
Bse1I	ACTGG	1 cut(s)	186
BseBI	CCWGG	1 cut(s)	121
BseDI	CCNNGG	4 cut(s)	21, 103, 119, 120
BseLI	CCNNNNNNNGG	2 cut(s)	104, 120
BseMII	CTCAG	1 cut(s)	155
BseNI	ACTGG	1 cut(s)	186
Bsh1236I	CGCG	1 cut(s)	171
BshFI	GGCC	1 cut(s)	96
BsiSI	CCGG	1 cut(s)	93
BslFI	GGGAC	1 cut(s)	130
BslI	CCNNNNNNNGG	2 cut(s)	104, 120
BsmFI	GGGAC	1 cut(s)	130
BsnI	GGCC	1 cut(s)	96
Bsp19I	CCATGG	1 cut(s)	21
BspACI	CCGC	3 cut(s)	136, 162, 169
BspANI	GGCC	1 cut(s)	96
BspCNI	CTCAG	1 cut(s)	154
BspFNI	CGCG	1 cut(s)	171
BspLI	GGNNCC	1 cut(s)	97
BsrBI	CCGCTC	1 cut(s)	164
BsrI	ACTGG	1 cut(s)	186
BssECI	CCNNGG	4 cut(s)	21, 103, 119, 120
BssNI	GRCGYC	1 cut(s)	156
BssT1I	CCWWGG	1 cut(s)	21
Bst2UI	CCWGG	1 cut(s)	121
BstACI	GRCGYC	1 cut(s)	156
BstDEI	CTNAG	1 cut(s)	141
BstDSI	CCRYGG	2 cut(s)	21, 103
BstFNI	CGCG	1 cut(s)	171
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstNI	CCWGG	1 cut(s)	121
BstSCI	CCNGG	1 cut(s)	119
BstUI	CGCG	1 cut(s)	171
BstXI	CCANNNNNNTGG	1 cut(s)	22
BsuRI	GGCC	1 cut(s)	96
BtgI	CCRYGG	2 cut(s)	21, 103
Cfr13I	GGNCC	1 cut(s)	95
Csp6I	GTAC	1 cut(s)	133
CviAII	CATG	1 cut(s)	22
CviJI	RGCY	3 cut(s)	10, 96, 113
CviKI_1	RGCY	3 cut(s)	10, 96, 113
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	1 cut(s)	141
Eco130I	CCWWGG	1 cut(s)	21
EcoRII	CCWGG	1 cut(s)	119
EcoT14I	CCWWGG	1 cut(s)	21
ErhI	CCWWGG	1 cut(s)	21
FaeI	CATG	1 cut(s)	25
FaiI	YATR	2 cut(s)	23, 230
FaqI	GGGAC	1 cut(s)	130
FatI	CATG	1 cut(s)	21
FblI	GTMKAC	1 cut(s)	180
Fnu4HI	GCNGC	1 cut(s)	162
Fsp4HI	GCNGC	1 cut(s)	162
GluI	GCNGC	1 cut(s)	162
HaeIII	GGCC	1 cut(s)	96
HapII	CCGG	1 cut(s)	93
Hin1I	GRCGYC	1 cut(s)	156
Hin1II	CATG	1 cut(s)	25
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	2 cut(s)	158, 214
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188III	TCNNGA	1 cut(s)	127
Hpy8I	GTNNAC	1 cut(s)	181
Hpy99I	CGWCG	5 cut(s)	35, 41, 86, 158, 161
HpyCH4IV	ACGT	2 cut(s)	81, 156
HpyCH4V	TGCA	1 cut(s)	209
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpyF3I	CTNAG	1 cut(s)	141
HpySE526I	ACGT	2 cut(s)	81, 156
Hsp92I	GRCGYC	1 cut(s)	156
Hsp92II	CATG	1 cut(s)	25
LpnPI	CCDG	5 cut(s)	106, 106, 133, 199, 219
MaeII	ACGT	2 cut(s)	81, 156
MbiI	CCGCTC	1 cut(s)	164
MluCI	AATT	1 cut(s)	194
MnlI	CCTC	4 cut(s)	61, 109, 150, 158
MslI	CAYNNNNRTG	2 cut(s)	20, 227
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	1 cut(s)	121
MvaI	CCWGG	1 cut(s)	121
MvnI	CGCG	1 cut(s)	171
MwoI	GCNNNNNNNGC	1 cut(s)	158
NcoI	CCATGG	1 cut(s)	21
NlaIII	CATG	1 cut(s)	25
NlaIV	GGNNCC	1 cut(s)	97
PasI	CCCWGGG	1 cut(s)	120
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PflFI	GACNNNGTC	1 cut(s)	176
PflMI	CCANNNNNTGG	1 cut(s)	120
PkrI	GCNGC	1 cut(s)	163
Psp6I	CCWGG	1 cut(s)	119
PspGI	CCWGG	1 cut(s)	119
PspN4I	GGNNCC	1 cut(s)	97
PspPI	GGNCC	1 cut(s)	95
PsyI	GACNNNGTC	1 cut(s)	176
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
RseI	CAYNNNNRTG	2 cut(s)	20, 227
SalI	GTCGAC	1 cut(s)	179
SatI	GCNGC	1 cut(s)	162
Sau96I	GGNCC	1 cut(s)	95
ScrFI	CCNGG	1 cut(s)	121
SetI	ASST	4 cut(s)	12, 84, 159, 227
SmiMI	CAYNNNNRTG	2 cut(s)	20, 227
Sse9I	AATT	1 cut(s)	194
SsiI	CCGC	3 cut(s)	136, 162, 169
StyD4I	CCNGG	1 cut(s)	119
StyI	CCWWGG	1 cut(s)	21
TaiI	ACGT	2 cut(s)	84, 159
TaqI	TCGA	3 cut(s)	30, 126, 180
TasI	AATT	1 cut(s)	194
TauI	GCSGC	1 cut(s)	164
Tth111I	GACNNNGTC	1 cut(s)	176
Van91I	CCANNNNNTGG	1 cut(s)	120
XmiI	GTMKAC	1 cut(s)	180
ZraI	GACGTC	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.