Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0043128.1

Orthogroup ID

OG0031082

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1298

Gene Structure 1298 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0043128.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 227 bp

agctaaccactcccatggacatcgacggcgacgataacaacccctctctaaaacccaacaacaagggcaaaaacgtcgccgtttccggcccctcccacggcaaagccactccctgggtcgagaagtaccgccctcagtccctcgccgacgtcgccgcccaccgcgacattgtcgacaccagtaagcaattcctactccctgcaactaaagatttcacctttttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031348 GO:0031390 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048585 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051338 GO:0051347 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0080134 GO:0090304 GO:0090329 GO:1900262 GO:1900264 GO:1901360 GO:1901576 GO:2000112 GO:2000278 GO:2000573

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 map03030 map03420 map03430

Pfam Domains

Protein Families

AAA Rep_fac_C

Protein Analysis

74

Amino Acids

8.08

Weight (kDa)

6.93

Isoelectric Point (pI)

17.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031082)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000562.1_g000003 Rmu_sc0043128.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	152
AccB7I	CCANNNNNTGG	1 cut(s)	113
AccI	GTMKAC	1 cut(s)	173
AccII	CGCG	1 cut(s)	164
AciI	CCGC	3 cut(s)	129, 155, 162
AcyI	GRCGYC	1 cut(s)	149
AfaI	GTAC	1 cut(s)	127
AfiI	CCNNNNNNNGG	2 cut(s)	97, 113
AjnI	CCWGG	1 cut(s)	112
AluBI	AGCT	1 cut(s)	3
AluI	AGCT	1 cut(s)	3
AoxI	GGCC	1 cut(s)	87
AspS9I	GGNCC	1 cut(s)	88
AsuHPI	GGTGA	1 cut(s)	207
BceAI	ACGGC	3 cut(s)	42, 64, 114
BcgI	CGANNNNNNTGC	2 cut(s)	57, 91
BciT130I	CCWGG	1 cut(s)	114
BisI	GCNGC	1 cut(s)	155
BlsI	GCNGC	1 cut(s)	156
Bme1390I	CCNGG	1 cut(s)	114
BmgT120I	GGNCC	1 cut(s)	88
BmiI	GGNNCC	1 cut(s)	90
BmrFI	CCNGG	1 cut(s)	114
BsaHI	GRCGYC	1 cut(s)	149
BsaJI	CCNNGG	4 cut(s)	14, 96, 112, 113
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 113
Bse1I	ACTGG	1 cut(s)	179
BseBI	CCWGG	1 cut(s)	114
BseDI	CCNNGG	4 cut(s)	14, 96, 112, 113
BseLI	CCNNNNNNNGG	2 cut(s)	97, 113
BseMII	CTCAG	1 cut(s)	148
BseNI	ACTGG	1 cut(s)	179
Bsh1236I	CGCG	1 cut(s)	164
BshFI	GGCC	1 cut(s)	89
BsiSI	CCGG	1 cut(s)	86
BslFI	GGGAC	1 cut(s)	123
BslI	CCNNNNNNNGG	2 cut(s)	97, 113
BsmFI	GGGAC	1 cut(s)	123
BsnI	GGCC	1 cut(s)	89
Bsp19I	CCATGG	1 cut(s)	14
BspACI	CCGC	3 cut(s)	129, 155, 162
BspANI	GGCC	1 cut(s)	89
BspCNI	CTCAG	1 cut(s)	147
BspFNI	CGCG	1 cut(s)	164
BspLI	GGNNCC	1 cut(s)	90
BsrI	ACTGG	1 cut(s)	179
BssECI	CCNNGG	4 cut(s)	14, 96, 112, 113
BssNI	GRCGYC	1 cut(s)	149
BssT1I	CCWWGG	1 cut(s)	14
Bst2UI	CCWGG	1 cut(s)	114
BstACI	GRCGYC	1 cut(s)	149
BstDEI	CTNAG	1 cut(s)	134
BstDSI	CCRYGG	2 cut(s)	14, 96
BstFNI	CGCG	1 cut(s)	164
BstMWI	GCNNNNNNNGC	1 cut(s)	151
BstNI	CCWGG	1 cut(s)	114
BstSCI	CCNGG	1 cut(s)	112
BstUI	CGCG	1 cut(s)	164
BstXI	CCANNNNNNTGG	1 cut(s)	15
BsuRI	GGCC	1 cut(s)	89
BtgI	CCRYGG	2 cut(s)	14, 96
Cfr13I	GGNCC	1 cut(s)	88
Csp6I	GTAC	1 cut(s)	126
CviAII	CATG	1 cut(s)	15
CviJI	RGCY	3 cut(s)	3, 89, 106
CviKI_1	RGCY	3 cut(s)	3, 89, 106
CviQI	GTAC	1 cut(s)	126
DdeI	CTNAG	1 cut(s)	134
Eco130I	CCWWGG	1 cut(s)	14
EcoRII	CCWGG	1 cut(s)	112
EcoT14I	CCWWGG	1 cut(s)	14
ErhI	CCWWGG	1 cut(s)	14
FaeI	CATG	1 cut(s)	18
FaiI	YATR	1 cut(s)	16
FaqI	GGGAC	1 cut(s)	123
FatI	CATG	1 cut(s)	14
FblI	GTMKAC	1 cut(s)	173
Fnu4HI	GCNGC	1 cut(s)	155
Fsp4HI	GCNGC	1 cut(s)	155
GluI	GCNGC	1 cut(s)	155
HaeIII	GGCC	1 cut(s)	89
HapII	CCGG	1 cut(s)	86
Hin1I	GRCGYC	1 cut(s)	149
Hin1II	CATG	1 cut(s)	18
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HpaII	CCGG	1 cut(s)	86
HphI	GGTGA	1 cut(s)	207
Hpy166II	GTNNAC	1 cut(s)	174
Hpy188III	TCNNGA	1 cut(s)	120
Hpy8I	GTNNAC	1 cut(s)	174
Hpy99I	CGWCG	5 cut(s)	28, 34, 79, 151, 154
HpyCH4IV	ACGT	2 cut(s)	74, 149
HpyCH4V	TGCA	1 cut(s)	202
HpyF10VI	GCNNNNNNNGC	1 cut(s)	151
HpyF3I	CTNAG	1 cut(s)	134
HpySE526I	ACGT	2 cut(s)	74, 149
Hsp92I	GRCGYC	1 cut(s)	149
Hsp92II	CATG	1 cut(s)	18
LpnPI	CCDG	5 cut(s)	99, 99, 126, 192, 212
MaeII	ACGT	2 cut(s)	74, 149
MluCI	AATT	1 cut(s)	187
MnlI	CCTC	4 cut(s)	54, 102, 143, 151
MslI	CAYNNNNRTG	1 cut(s)	13
MspI	CCGG	1 cut(s)	86
MspR9I	CCNGG	1 cut(s)	114
MvaI	CCWGG	1 cut(s)	114
MvnI	CGCG	1 cut(s)	164
MwoI	GCNNNNNNNGC	1 cut(s)	151
NcoI	CCATGG	1 cut(s)	14
NlaIII	CATG	1 cut(s)	18
NlaIV	GGNNCC	1 cut(s)	90
PasI	CCCWGGG	1 cut(s)	113
PcsI	WCGNNNNNNNCGW	1 cut(s)	29
PflFI	GACNNNGTC	1 cut(s)	169
PflMI	CCANNNNNTGG	1 cut(s)	113
PkrI	GCNGC	1 cut(s)	156
Psp6I	CCWGG	1 cut(s)	112
PspGI	CCWGG	1 cut(s)	112
PspN4I	GGNNCC	1 cut(s)	90
PspPI	GGNCC	1 cut(s)	88
PsyI	GACNNNGTC	1 cut(s)	169
RsaI	GTAC	1 cut(s)	127
RsaNI	GTAC	1 cut(s)	126
RseI	CAYNNNNRTG	1 cut(s)	13
SalI	GTCGAC	1 cut(s)	172
SatI	GCNGC	1 cut(s)	155
Sau96I	GGNCC	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	114
SetI	ASST	3 cut(s)	77, 152, 220
SmiMI	CAYNNNNRTG	1 cut(s)	13
Sse9I	AATT	1 cut(s)	187
SsiI	CCGC	3 cut(s)	129, 155, 162
StyD4I	CCNGG	1 cut(s)	112
StyI	CCWWGG	1 cut(s)	14
TaiI	ACGT	2 cut(s)	77, 152
TaqI	TCGA	3 cut(s)	23, 119, 173
TasI	AATT	1 cut(s)	187
TauI	GCSGC	1 cut(s)	157
Tth111I	GACNNNGTC	1 cut(s)	169
Van91I	CCANNNNNTGG	1 cut(s)	113
XmiI	GTMKAC	1 cut(s)	173
ZraI	GACGTC	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.