Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000588.1

Orthogroup ID

OG0031085

Physical Location & Seq

Genomic Coordinates Forward (+)

72293 .. 74553

Gene Structure 2261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

atgaaaaaaccgcaccgcaccgaatctgttcggttcggttttcggtttaggcccggtcgaaaccgaaccgaaccgcaaaacgaaacactgttcacttactacaaaacgacgtcgttttgtattagggtttggagacgcacttacctcgagtcgaatcctcatttcctctgttcctcagttcctcagccgaaaactctctcggccccgactttttcctcatctctcagtcgaatcctcgccgccaccggacgccaccaatcaggaactcaggaagacaggaactcacagcagctttccatctctctttccatcggcaaggatttagcaaccgcatttattaaggttcttggtaatgaaaaggccagtaaggaagtgttcaacatctccggagaaaaatatgtcacctttgatggattagcaaaggcatgtgcaaaggctgctggatttccggagcctgagattgttcactataaccctaaggagtttgactttgggaagaagaaggcatttccatttcgtgaccagatcaacactagtgttggtgaatctacaacaccaatacctccccacaaaggaacttctactgcaactagttttagtgaacttatacttctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000427 GO:0000428 GO:0001101 GO:0001871 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0005840 GO:0005911 GO:0005975 GO:0005996 GO:0006139 GO:0006355 GO:0006364 GO:0006396 GO:0006412 GO:0006417 GO:0006518 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0007154 GO:0007623 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009628 GO:0009657 GO:0009658 GO:0009889 GO:0009891 GO:0009893 GO:0009941 GO:0009987 GO:0009991 GO:0010035 GO:0010287 GO:0010297 GO:0010319 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0019538 GO:0022613 GO:0030054 GO:0030246 GO:0030247 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031668 GO:0031967 GO:0031975 GO:0032268 GO:0032270 GO:0032544 GO:0032991 GO:0033554 GO:0034248 GO:0034250 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0042254 GO:0042579 GO:0042631 GO:0042742 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0045893 GO:0045935 GO:0046483 GO:0048046 GO:0048511 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071496 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:0104004 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase

Protein Analysis

205

Amino Acids

22.96

Weight (kDa)

9.74

Isoelectric Point (pI)

48.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031085)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000588.1_g000022
rosa_samantha	Rh5AG465200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	113
AccIII	TCCGGA	2 cut(s)	386, 448
AciI	CCGC	5 cut(s)	11, 16, 74, 240, 330
AcyI	GRCGYC	2 cut(s)	110, 250
AfiI	CCNNNNNNNGG	1 cut(s)	572
AgsI	TTSAA	1 cut(s)	379
AhlI	ACTAGT	2 cut(s)	533, 590
AluBI	AGCT	1 cut(s)	292
AluI	AGCT	1 cut(s)	292
Alw26I	GTCTC	1 cut(s)	127
Ama87I	CYCGRG	1 cut(s)	146
Aor13HI	TCCGGA	2 cut(s)	386, 448
AoxI	GGCC	3 cut(s)	50, 201, 360
ApeKI	GCWGC	2 cut(s)	289, 437
Asp700I	GAANNNNTTC	1 cut(s)	27
AspS9I	GGNCC	2 cut(s)	51, 202
AsuC2I	CCSGG	1 cut(s)	54
AsuHPI	GGTGA	2 cut(s)	394, 554
AvaI	CYCGRG	1 cut(s)	146
AxyI	CCTNAGG	1 cut(s)	477
BbsI	GAAGAC	1 cut(s)	279
BbvCI	CCTCAGC	1 cut(s)	183
BbvI	GCAGC	2 cut(s)	301, 424
BccI	CCATC	3 cut(s)	305, 317, 404
BcgI	CGANNNNNNTGC	2 cut(s)	127, 161
BcnI	CCSGG	1 cut(s)	54
BcoDI	GTCTC	1 cut(s)	127
BcuI	ACTAGT	2 cut(s)	533, 590
BfaI	CTAG	2 cut(s)	534, 591
BisI	GCNGC	3 cut(s)	240, 290, 438
BlsI	GCNGC	3 cut(s)	241, 291, 439
Bme1390I	CCNGG	1 cut(s)	54
BmeT110I	CYCGRG	1 cut(s)	146
BmgT120I	GGNCC	2 cut(s)	51, 202
BmiI	GGNNCC	2 cut(s)	204, 453
BmrFI	CCNGG	1 cut(s)	54
BpiI	GAAGAC	1 cut(s)	279
Bpu10I	CCTNAGC	1 cut(s)	183
BpuMI	CCSGG	1 cut(s)	54
BsaHI	GRCGYC	2 cut(s)	110, 250
BsaWI	WCCGGW	3 cut(s)	245, 386, 448
Bsc4I	CCNNNNNNNGG	1 cut(s)	572
Bse1I	ACTGG	1 cut(s)	363
Bse21I	CCTNAGG	1 cut(s)	477
BseAI	TCCGGA	2 cut(s)	386, 448
BseLI	CCNNNNNNNGG	1 cut(s)	572
BseMII	CTCAG	5 cut(s)	189, 197, 238, 281, 447
BseNI	ACTGG	1 cut(s)	363
BseXI	GCAGC	2 cut(s)	301, 424
Bsh1285I	CGRYCG	1 cut(s)	58
BshFI	GGCC	3 cut(s)	52, 203, 362
BsiEI	CGRYCG	1 cut(s)	58
BsiHKCI	CYCGRG	1 cut(s)	146
BsiSI	CCGG	4 cut(s)	54, 246, 387, 449
BslI	CCNNNNNNNGG	1 cut(s)	572
BsmAI	GTCTC	1 cut(s)	127
BsmBI	CGTCTC	1 cut(s)	127
BsnI	GGCC	3 cut(s)	52, 203, 362
BsoBI	CYCGRG	1 cut(s)	146
Bsp13I	TCCGGA	2 cut(s)	386, 448
Bsp143I	GATC	1 cut(s)	525
BspACI	CCGC	5 cut(s)	11, 16, 74, 240, 330
BspANI	GGCC	3 cut(s)	52, 203, 362
BspCNI	CTCAG	5 cut(s)	188, 196, 237, 280, 448
BspEI	TCCGGA	2 cut(s)	386, 448
BspLI	GGNNCC	2 cut(s)	204, 453
BsrI	ACTGG	1 cut(s)	363
BssMI	GATC	1 cut(s)	525
BssNI	GRCGYC	2 cut(s)	110, 250
Bst4CI	ACNGT	1 cut(s)	90
BstACI	GRCGYC	2 cut(s)	110, 250
BstAPI	GCANNNNNTGC	1 cut(s)	437
BstDEI	CTNAG	6 cut(s)	175, 183, 224, 267, 456, 477
BstKTI	GATC	1 cut(s)	528
BstMAI	GTCTC	1 cut(s)	127
BstMBI	GATC	1 cut(s)	525
BstMCI	CGRYCG	1 cut(s)	58
BstMWI	GCNNNNNNNGC	1 cut(s)	437
BstNSI	RCATGY	1 cut(s)	429
BstSCI	CCNGG	1 cut(s)	52
BstV1I	GCAGC	2 cut(s)	301, 424
BstV2I	GAAGAC	1 cut(s)	279
Bsu36I	CCTNAGG	1 cut(s)	477
BsuRI	GGCC	3 cut(s)	52, 203, 362
BtsIMutI	CAGTG	1 cut(s)	86
Cfr13I	GGNCC	2 cut(s)	51, 202
CseI	GACGC	2 cut(s)	144, 258
CviAII	CATG	1 cut(s)	426
CviJI	RGCY	7 cut(s)	52, 187, 203, 292, 362, 437, 454
CviKI_1	RGCY	7 cut(s)	52, 187, 203, 292, 362, 437, 454
DdeI	CTNAG	6 cut(s)	175, 183, 224, 267, 456, 477
DpnI	GATC	1 cut(s)	527
DpnII	GATC	1 cut(s)	525
Eco81I	CCTNAGG	1 cut(s)	477
Eco88I	CYCGRG	1 cut(s)	146
Esp3I	CGTCTC	1 cut(s)	127
FaeI	CATG	1 cut(s)	429
FaiI	YATR	4 cut(s)	399, 427, 471, 608
FatI	CATG	1 cut(s)	425
Fnu4HI	GCNGC	3 cut(s)	240, 290, 438
Fsp4HI	GCNGC	3 cut(s)	240, 290, 438
FspBI	CTAG	2 cut(s)	534, 591
GluI	GCNGC	3 cut(s)	240, 290, 438
HaeIII	GGCC	3 cut(s)	52, 203, 362
HapII	CCGG	4 cut(s)	54, 246, 387, 449
HgaI	GACGC	2 cut(s)	144, 258
Hin1I	GRCGYC	2 cut(s)	110, 250
Hin1II	CATG	1 cut(s)	429
HinfI	GANTC	5 cut(s)	23, 149, 154, 231, 545
HpaII	CCGG	4 cut(s)	54, 246, 387, 449
HphI	GGTGA	2 cut(s)	394, 554
Hpy166II	GTNNAC	3 cut(s)	93, 466, 602
Hpy188III	TCNNGA	5 cut(s)	261, 269, 387, 449, 518
Hpy8I	GTNNAC	3 cut(s)	93, 466, 602
Hpy99I	CGWCG	2 cut(s)	112, 115
HpyAV	CCTTC	1 cut(s)	496
HpyCH4III	ACNGT	1 cut(s)	90
HpyCH4IV	ACGT	1 cut(s)	110
HpyCH4V	TGCA	2 cut(s)	431, 587
HpyF10VI	GCNNNNNNNGC	1 cut(s)	437
HpyF3I	CTNAG	6 cut(s)	175, 183, 224, 267, 456, 477
HpySE526I	ACGT	1 cut(s)	110
Hsp92I	GRCGYC	2 cut(s)	110, 250
Hsp92II	CATG	1 cut(s)	429
Kpn2I	TCCGGA	2 cut(s)	386, 448
Kzo9I	GATC	1 cut(s)	525
LmnI	GCTCC	1 cut(s)	451
Lsp1109I	GCAGC	2 cut(s)	301, 424
MaeI	CTAG	2 cut(s)	534, 591
MaeII	ACGT	1 cut(s)	110
MaeIII	GTNAC	2 cut(s)	400, 518
MalI	GATC	1 cut(s)	527
MboI	GATC	1 cut(s)	525
MboII	GAAGA	3 cut(s)	284, 508, 511
MlyI	GAGTC	1 cut(s)	158
MnlI	CCTC	8 cut(s)	155, 168, 176, 184, 192, 226, 245, 573
MroI	TCCGGA	2 cut(s)	386, 448
MroXI	GAANNNNTTC	1 cut(s)	27
MseI	TTAA	1 cut(s)	339
MspI	CCGG	4 cut(s)	54, 246, 387, 449
MspR9I	CCNGG	1 cut(s)	54
MwoI	GCNNNNNNNGC	1 cut(s)	437
NciI	CCSGG	1 cut(s)	54
NdeII	GATC	1 cut(s)	525
NlaIII	CATG	1 cut(s)	429
NlaIV	GGNNCC	2 cut(s)	204, 453
NmeAIII	GCCGAG	1 cut(s)	179
NmuCI	GTSAC	2 cut(s)	400, 518
NspI	RCATGY	1 cut(s)	429
PaeR7I	CTCGAG	1 cut(s)	146
PdmI	GAANNNNTTC	1 cut(s)	27
PfeI	GAWTC	4 cut(s)	23, 154, 231, 545
PkrI	GCNGC	3 cut(s)	241, 291, 439
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
PspN4I	GGNNCC	2 cut(s)	204, 453
PspPI	GGNCC	2 cut(s)	51, 202
PspXI	VCTCGAGB	1 cut(s)	146
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	3 cut(s)	240, 290, 438
Sau3AI	GATC	1 cut(s)	525
Sau96I	GGNCC	2 cut(s)	51, 202
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	1 cut(s)	54
SetI	ASST	6 cut(s)	113, 147, 294, 345, 407, 565
Sfr274I	CTCGAG	1 cut(s)	146
SlaI	CTCGAG	1 cut(s)	146
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
SpeI	ACTAGT	2 cut(s)	533, 590
SsiI	CCGC	5 cut(s)	11, 16, 74, 240, 330
SspMI	CTAG	2 cut(s)	534, 591
StyD4I	CCNGG	1 cut(s)	52
TaaI	ACNGT	1 cut(s)	90
TaiI	ACGT	1 cut(s)	113
TaqI	TCGA	4 cut(s)	58, 147, 152, 229
TauI	GCSGC	1 cut(s)	242
TfiI	GAWTC	4 cut(s)	23, 154, 231, 545
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	1 cut(s)	93
TseFI	GTSAC	2 cut(s)	400, 518
TseI	GCWGC	2 cut(s)	289, 437
Tsp45I	GTSAC	2 cut(s)	400, 518
TspDTI	ATGAA	2 cut(s)	17, 369
TspRI	CASTG	1 cut(s)	93
XceI	RCATGY	1 cut(s)	429
XhoI	CTCGAG	1 cut(s)	146
XmnI	GAANNNNTTC	1 cut(s)	27
XspI	CTAG	2 cut(s)	534, 591
ZraI	GACGTC	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.