Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000656.1

Orthogroup ID

OG0028831

Physical Location & Seq

Genomic Coordinates Forward (+)

101277 .. 103317

Gene Structure 2041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

atgcttcccttgctggcgaggataattgaaaatcgtataccagtttgggttttcagtggagaccaagattctgttgttccactattgggctcccgaacactcatccgtgaattagcaaatgatctaaagttccagataacagtgccatatggagcttggtttcacaaaggccaggtaggaggttgggcaacggagtatggaaatctattgacctttgccacagtaagaggtgctgctcatatggtaccctatgctcaaccatcaagatctttgcacctgttcagttcatttgttcataataggagattgcccaacacgacacgtcctcccattatgaataagaaagctcttgagcatcggcatccggtcaccaaaattgtcttccggcgacatggatcctcttcctctgttgccgatcaccaaaatcgtcttcaggtccggaatcaaggctatgccttgtcgatcggaatcagaggcatcgggttgagaaggatgagggagagagagagacagcgtatggagagagtcgggttccagaagaaaattgatgtcgccgatgaggagtctcgatctggatttggaggctctagtcgccgtcgctataggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005618 GO:0005623 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0030312 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

202

Amino Acids

23.15

Weight (kDa)

11.49

Isoelectric Point (pI)

55.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	1 - 100	3.5e-25	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028831)

Species	Orthologous Gene IDs
malus_domestica	MD05G1015400.v1.1
rosa_multiflora	Rmu_sc0000656.1_g000032

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	244
AccB1I	GGYRCC	1 cut(s)	244
AccI	GTMKAC	1 cut(s)	37
AccIII	TCCGGA	1 cut(s)	438
AclWI	GGATC	2 cut(s)	390, 403
AcuI	CTGAAG	1 cut(s)	416
AfaI	GTAC	1 cut(s)	246
AfiI	CCNNNNNNNGG	1 cut(s)	86
AflIII	ACRYGT	1 cut(s)	320
AgsI	TTSAA	1 cut(s)	29
AjiI	CACGTC	1 cut(s)	323
AjnI	CCWGG	1 cut(s)	171
AjuI	GAANNNNNNNTTGG	4 cut(s)	365, 397, 414, 446
AluBI	AGCT	2 cut(s)	155, 347
AluI	AGCT	2 cut(s)	155, 347
Alw26I	GTCTC	3 cut(s)	54, 502, 570
AlwI	GGATC	2 cut(s)	390, 403
Aor13HI	TCCGGA	1 cut(s)	438
AoxI	GGCC	1 cut(s)	169
ApeKI	GCWGC	1 cut(s)	233
Asp718I	GGTACC	1 cut(s)	244
AspS9I	GGNCC	1 cut(s)	436
AsuHPI	GGTGA	2 cut(s)	361, 410
AvaII	GGWCC	1 cut(s)	436
BamHI	GGATCC	1 cut(s)	395
BanI	GGYRCC	1 cut(s)	244
BanII	GRGCYC	1 cut(s)	92
BbsI	GAAGAC	2 cut(s)	373, 422
BbvI	GCAGC	1 cut(s)	220
BccI	CCATC	1 cut(s)	268
BceAI	ACGGC	1 cut(s)	579
BciT130I	CCWGG	1 cut(s)	173
BcoDI	GTCTC	3 cut(s)	54, 502, 570
BfaI	CTAG	1 cut(s)	588
BfmI	CTRYAG	1 cut(s)	601
BglII	AGATCT	1 cut(s)	266
BisI	GCNGC	1 cut(s)	234
BlsI	GCNGC	1 cut(s)	235
Bme1390I	CCNGG	1 cut(s)	173
Bme18I	GGWCC	1 cut(s)	436
BmgBI	CACGTC	1 cut(s)	323
BmgT120I	GGNCC	1 cut(s)	436
BmiI	GGNNCC	4 cut(s)	91, 246, 397, 533
BmrFI	CCNGG	1 cut(s)	173
BmsI	GCATC	3 cut(s)	364, 370, 486
BpiI	GAAGAC	2 cut(s)	373, 422
BpuEI	CTTGAG	1 cut(s)	371
BsaBI	GATNNNNATC	1 cut(s)	467
BsaI	GGTCTC	1 cut(s)	54
BsaWI	WCCGGW	2 cut(s)	364, 438
BsaXI	ACNNNNNCTCC	2 cut(s)	310, 340
Bsc4I	CCNNNNNNNGG	1 cut(s)	86
Bse1I	ACTGG	1 cut(s)	41
Bse8I	GATNNNNATC	1 cut(s)	467
BseAI	TCCGGA	1 cut(s)	438
BseBI	CCWGG	1 cut(s)	173
BseGI	GGATG	3 cut(s)	102, 361, 498
BseJI	GATNNNNATC	1 cut(s)	467
BseLI	CCNNNNNNNGG	1 cut(s)	86
BseNI	ACTGG	1 cut(s)	41
BseRI	GAGGAG	1 cut(s)	575
BseXI	GCAGC	1 cut(s)	220
Bsh1285I	CGRYCG	1 cut(s)	465
BshFI	GGCC	1 cut(s)	171
BshNI	GGYRCC	1 cut(s)	244
BsiEI	CGRYCG	1 cut(s)	465
BsiSI	CCGG	3 cut(s)	365, 385, 439
BslI	CCNNNNNNNGG	1 cut(s)	86
BsmAI	GTCTC	3 cut(s)	54, 502, 570
BsnI	GGCC	1 cut(s)	171
Bso31I	GGTCTC	1 cut(s)	54
Bsp1286I	GDGCHC	1 cut(s)	92
Bsp13I	TCCGGA	1 cut(s)	438
Bsp143I	GATC	6 cut(s)	121, 266, 395, 415, 462, 569
BspANI	GGCC	1 cut(s)	171
BspEI	TCCGGA	1 cut(s)	438
BspLI	GGNNCC	4 cut(s)	91, 246, 397, 533
BspPI	GGATC	2 cut(s)	390, 403
BspT107I	GGYRCC	1 cut(s)	244
BspTNI	GGTCTC	1 cut(s)	54
BsrI	ACTGG	1 cut(s)	41
BssMI	GATC	6 cut(s)	121, 266, 395, 415, 462, 569
BssNAI	GTATAC	1 cut(s)	38
Bst1107I	GTATAC	1 cut(s)	38
Bst2UI	CCWGG	1 cut(s)	173
Bst4CI	ACNGT	2 cut(s)	142, 223
Bst6I	CTCTTC	1 cut(s)	406
BstC8I	GCNNGC	1 cut(s)	15
BstEII	GGTNACC	1 cut(s)	367
BstF5I	GGATG	3 cut(s)	102, 361, 498
BstKTI	GATC	6 cut(s)	124, 269, 398, 418, 465, 572
BstMAI	GTCTC	3 cut(s)	54, 502, 570
BstMBI	GATC	6 cut(s)	121, 266, 395, 415, 462, 569
BstMCI	CGRYCG	1 cut(s)	465
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 591
BstNI	CCWGG	1 cut(s)	173
BstPI	GGTNACC	1 cut(s)	367
BstSCI	CCNGG	1 cut(s)	171
BstSFI	CTRYAG	1 cut(s)	601
BstV1I	GCAGC	1 cut(s)	220
BstV2I	GAAGAC	2 cut(s)	373, 422
BstX2I	RGATCY	2 cut(s)	266, 395
BstYI	RGATCY	2 cut(s)	266, 395
BstZ17I	GTATAC	1 cut(s)	38
BsuRI	GGCC	1 cut(s)	171
BtrI	CACGTC	1 cut(s)	323
BtsCI	GGATG	3 cut(s)	102, 361, 498
BtsIMutI	CAGTG	2 cut(s)	61, 147
Cac8I	GCNNGC	1 cut(s)	15
Cfr13I	GGNCC	1 cut(s)	436
Csp6I	GTAC	1 cut(s)	245
CviAII	CATG	1 cut(s)	392
CviJI	RGCY	6 cut(s)	90, 155, 171, 347, 450, 585
CviKI_1	RGCY	6 cut(s)	90, 155, 171, 347, 450, 585
CviQI	GTAC	1 cut(s)	245
DpnI	GATC	6 cut(s)	123, 268, 397, 417, 464, 571
DpnII	GATC	6 cut(s)	121, 266, 395, 415, 462, 569
Eam1104I	CTCTTC	1 cut(s)	406
EarI	CTCTTC	1 cut(s)	406
Eco24I	GRGCYC	1 cut(s)	92
Eco31I	GGTCTC	1 cut(s)	54
Eco47I	GGWCC	1 cut(s)	436
Eco57I	CTGAAG	1 cut(s)	416
Eco91I	GGTNACC	1 cut(s)	367
EcoO65I	GGTNACC	1 cut(s)	367
EcoRII	CCWGG	1 cut(s)	171
EcoT38I	GRGCYC	1 cut(s)	92
FaeI	CATG	1 cut(s)	395
FatI	CATG	1 cut(s)	391
FauNDI	CATATG	2 cut(s)	148, 240
FblI	GTMKAC	1 cut(s)	37
Fnu4HI	GCNGC	1 cut(s)	234
FokI	GGATG	3 cut(s)	89, 348, 505
FriOI	GRGCYC	1 cut(s)	92
Fsp4HI	GCNGC	1 cut(s)	234
FspBI	CTAG	1 cut(s)	588
GluI	GCNGC	1 cut(s)	234
HaeIII	GGCC	1 cut(s)	171
HapII	CCGG	3 cut(s)	365, 385, 439
Hin1II	CATG	1 cut(s)	395
HinfI	GANTC	5 cut(s)	68, 442, 468, 525, 563
HpaII	CCGG	3 cut(s)	365, 385, 439
HphI	GGTGA	2 cut(s)	361, 410
Hpy166II	GTNNAC	1 cut(s)	38
Hpy188I	TCNGA	2 cut(s)	467, 473
Hpy188III	TCNNGA	8 cut(s)	93, 133, 264, 350, 439, 535, 567, 573
Hpy8I	GTNNAC	1 cut(s)	38
Hpy99I	CGWCG	1 cut(s)	600
HpyAV	CCTTC	1 cut(s)	483
HpyCH4III	ACNGT	2 cut(s)	142, 223
HpyCH4IV	ACGT	1 cut(s)	322
HpyCH4V	TGCA	1 cut(s)	274
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 591
HpySE526I	ACGT	1 cut(s)	322
Hsp92II	CATG	1 cut(s)	395
Kpn2I	TCCGGA	1 cut(s)	438
KpnI	GGTACC	1 cut(s)	248
Kzo9I	GATC	6 cut(s)	121, 266, 395, 415, 462, 569
LmnI	GCTCC	2 cut(s)	95, 152
Lsp1109I	GCAGC	1 cut(s)	220
LweI	GCATC	3 cut(s)	364, 370, 486
MaeI	CTAG	1 cut(s)	588
MaeII	ACGT	1 cut(s)	322
MaeIII	GTNAC	1 cut(s)	367
MalI	GATC	6 cut(s)	123, 268, 397, 417, 464, 571
MboI	GATC	6 cut(s)	121, 266, 395, 415, 462, 569
MboII	GAAGA	4 cut(s)	373, 393, 422, 550
MflI	RGATCY	2 cut(s)	266, 395
MhlI	GDGCHC	1 cut(s)	92
MluCI	AATT	4 cut(s)	24, 110, 375, 543
MlyI	GAGTC	2 cut(s)	534, 572
MroI	TCCGGA	1 cut(s)	438
MspI	CCGG	3 cut(s)	365, 385, 439
MspR9I	CCNGG	1 cut(s)	173
MvaI	CCWGG	1 cut(s)	173
MwoI	GCNNNNNNNGC	2 cut(s)	10, 591
NdeI	CATATG	2 cut(s)	148, 240
NdeII	GATC	6 cut(s)	121, 266, 395, 415, 462, 569
NlaIII	CATG	1 cut(s)	395
NlaIV	GGNNCC	4 cut(s)	91, 246, 397, 533
NmuCI	GTSAC	1 cut(s)	367
PfeI	GAWTC	3 cut(s)	68, 442, 468
PkrI	GCNGC	1 cut(s)	235
Ple19I	CGATCG	1 cut(s)	465
PleI	GAGTC	2 cut(s)	533, 571
PpsI	GAGTC	2 cut(s)	533, 571
Psp6I	CCWGG	1 cut(s)	171
PspEI	GGTNACC	1 cut(s)	367
PspGI	CCWGG	1 cut(s)	171
PspN4I	GGNNCC	4 cut(s)	91, 246, 397, 533
PspPI	GGNCC	1 cut(s)	436
PsuI	RGATCY	2 cut(s)	266, 395
PvuI	CGATCG	1 cut(s)	465
RsaI	GTAC	1 cut(s)	246
RsaNI	GTAC	1 cut(s)	245
SatI	GCNGC	1 cut(s)	234
Sau3AI	GATC	6 cut(s)	121, 266, 395, 415, 462, 569
Sau96I	GGNCC	1 cut(s)	436
SchI	GAGTC	2 cut(s)	534, 572
ScrFI	CCNGG	1 cut(s)	173
SduI	GDGCHC	1 cut(s)	92
SfaNI	GCATC	3 cut(s)	364, 370, 486
SfcI	CTRYAG	1 cut(s)	601
SinI	GGWCC	1 cut(s)	436
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	4 cut(s)	24, 110, 375, 543
SspMI	CTAG	1 cut(s)	588
StyD4I	CCNGG	1 cut(s)	171
TaaI	ACNGT	2 cut(s)	142, 223
TaiI	ACGT	1 cut(s)	325
TaqI	TCGA	2 cut(s)	461, 568
TasI	AATT	4 cut(s)	24, 110, 375, 543
TfiI	GAWTC	3 cut(s)	68, 442, 468
TscAI	CASTG	2 cut(s)	61, 147
TseFI	GTSAC	1 cut(s)	367
TseI	GCWGC	1 cut(s)	233
Tsp45I	GTSAC	1 cut(s)	367
TspDTI	ATGAA	3 cut(s)	276, 284, 350
TspGWI	ACGGA	2 cut(s)	95, 206
TspRI	CASTG	2 cut(s)	61, 147
VpaK11BI	GGWCC	1 cut(s)	436
XcmI	CCANNNNNNNNNTGG	1 cut(s)	153
XmiI	GTMKAC	1 cut(s)	37
XspI	CTAG	1 cut(s)	588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.