Rmu_sc0000673.1_g000011

Putative gypsy type transposon

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000673.1
OG0031088
Physical Location & Seq
Reverse (-)
49780 .. 51581
1802 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1296 bp
atgggtcgtgccaggcgtctagagagttctagggcgggagaggatgctgccgccctcaataggtgtgaggagaggctggcgaacaataacgccgctagcggctccactgatgggggagagactggcggggaggagattgagtcggcatgggtcctacgtgacggtactgcagttgatgagctgagagggccaatgactgtggccgcagtcaaccgtctggagcgggtgttccgcctgcctggagtggtgaagttgcgcccgccaaccgctgatgagaaggcttccattctgccggcggggtatgctgccgttcatgaggccatcttccaccagggagtgacgtttccccttgtgccaaatctacaaattttggtttgtgagtttggcctcgcctttgggaaaattttctcaaacatgtggcggttgctgatggcgctcaactcgctatggtgcctgtccagttgcgagggtccaaccgtggcggaggtgctacacttctacgagtttgtatacgtgaagcgccaagtttgcagtgggcaggtaaatctgagcagccgtcaggcggcgcctaagttaatcgagaatttgaaggattccatgtctccgtggcggggaaccttttgtattgccaccgctgctcagagagtgcctgccaactggtgtgggaaccagaaggagagggtggtgccctcaaaagaaccagtgaatgtggcagggctggaaccgcagatgaaatcgaggcctgtcaccgctagtgctactcgggaggtacttgagaggaagcggcggcagaacgacactgatgaaaaggacgatgcagctgatgtggagaccattggggcccgccagcagaagaaggaaaaacgggtcccgccgaaggtgactgtggcctccggcagggaggtgtcgatgagcgatttggattcgttgggtgtatgtcgaattcctgaccgaccccgagtgggagttcctcttccacctttctcgtcctttaggcatctttctgttgggctgcacgagatgttccttgtgtcgtcgaaccagccctggaatgtctccatcgagagggacctcgagcggaacaatcgcatgtcccagctagagcaagacatcgctctactgaatgatcaactagcagccaaggttaagaagattgagattcttcagcaagaatcgaccgctaaatcggcggaggtgaagcggttggagggcgaggttgcccgacgggaagcgaagaggagccgtaggaaggccacccccgtggaggcgttcaagcagtctgcggagtacaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_28

Protein Analysis

431

Amino Acids

47.8

Weight (kDa)

9.04

Isoelectric Point (pI)

55.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031088)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000673.1_g000011 Rmu_sc0002927.1_g000053

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 529
AccB1I GGYRCC 3 cut(s) 450, 565, 685
AccBSI CCGCTC 2 cut(s) 223, 1078
AccI GTMKAC 1 cut(s) 510
AcoI YGGCCR 1 cut(s) 201
AcsI RAATTY 4 cut(s) 366, 402, 583, 942
AcuI CTGAAG 1 cut(s) 1148
AcyI GRCGYC 2 cut(s) 16, 566
AfaI GTAC 3 cut(s) 166, 771, 1289
AflIII ACRYGT 1 cut(s) 414
AgsI TTSAA 2 cut(s) 589, 1273
AjnI CCWGG 4 cut(s) 11, 238, 330, 1046
AleI CACNNNNGTG 1 cut(s) 1259
AloI GAACNNNNNNTCC 2 cut(s) 212, 244
AluBI AGCT 3 cut(s) 181, 821, 1099
AluI AGCT 3 cut(s) 181, 821, 1099
Alw26I GTCTC 4 cut(s) 113, 606, 824, 1060
Ama87I CYCGRG 3 cut(s) 762, 957, 1073
AoxI GGCC 8 cut(s) 188, 201, 318, 385, 740, 840, 888, 1251
ApaI GGGCCC 1 cut(s) 844
ApeKI GCWGC 7 cut(s) 47, 305, 552, 635, 818, 1012, 1136
ApoI RAATTY 4 cut(s) 366, 402, 583, 942
Asp700I GAANNNNTTC 1 cut(s) 404
AspLEI GCGC 4 cut(s) 258, 436, 522, 568
AspS9I GGNCC 7 cut(s) 151, 188, 470, 840, 841, 868, 1069
AsuHPI GGTGA 4 cut(s) 259, 739, 892, 1207
AsuNHI GCTAGC 1 cut(s) 95
AvaI CYCGRG 3 cut(s) 762, 957, 1073
AvaII GGWCC 4 cut(s) 151, 470, 868, 1069
BaeGI GKGCMC 2 cut(s) 690, 844
BaeI ACNNNNGTAYC 2 cut(s) 156, 189
BanI GGYRCC 3 cut(s) 450, 565, 685
BanII GRGCYC 1 cut(s) 844
BauI CACGAG 1 cut(s) 1016
BbvI GCAGC 7 cut(s) 34, 292, 564, 622, 830, 999, 1148
BccI CCATC 4 cut(s) 104, 329, 424, 1067
BceAI ACGGC 3 cut(s) 293, 540, 1227
BciT130I CCWGG 4 cut(s) 13, 240, 332, 1048
BclI TGATCA 1 cut(s) 1126
BcoDI GTCTC 4 cut(s) 113, 606, 824, 1060
BfaI CTAG 6 cut(s) 20, 30, 96, 753, 1100, 1133
BfmI CTRYAG 1 cut(s) 168
BfoI RGCGCY 3 cut(s) 437, 523, 569
BfuAI ACCTGC 1 cut(s) 529
Bme1390I CCNGG 4 cut(s) 13, 240, 332, 1048
Bme18I GGWCC 4 cut(s) 151, 470, 868, 1069
BmeT110I CYCGRG 3 cut(s) 762, 957, 1073
BmgT120I GGNCC 7 cut(s) 151, 188, 470, 840, 841, 868, 1069
BmrFI CCNGG 4 cut(s) 13, 240, 332, 1048
BmsI GCATC 3 cut(s) 34, 805, 1006
BmtI GCTAGC 1 cut(s) 99
BpmI CTGGAG 2 cut(s) 239, 261
BpuEI CTTGAG 1 cut(s) 794
BsaAI YACGTR 2 cut(s) 158, 514
BsaHI GRCGYC 2 cut(s) 16, 566
BsaI GGTCTC 1 cut(s) 824
BsaJI CCNNGG 6 cut(s) 331, 477, 605, 1046, 1140, 1260
BsaXI ACNNNNNCTCC 5 cut(s) 125, 155, 212, 242, 1277
Bse118I RCCGGY 1 cut(s) 292
Bse1I ACTGG 4 cut(s) 127, 459, 662, 701
BseBI CCWGG 4 cut(s) 13, 240, 332, 1048
BseDI CCNNGG 6 cut(s) 331, 477, 605, 1046, 1140, 1260
BseGI GGATG 1 cut(s) 49
BseMII CTCAG 3 cut(s) 173, 539, 653
BseNI ACTGG 4 cut(s) 127, 459, 662, 701
BseRI GAGGAG 3 cut(s) 83, 146, 1252
BseSI GKGCMC 2 cut(s) 690, 844
BseXI GCAGC 7 cut(s) 34, 292, 564, 622, 830, 999, 1148
BseYI CCCAGC 1 cut(s) 1095
BsgI GTGCAG 1 cut(s) 998
Bsh1285I CGRYCG 1 cut(s) 1179
BshFI GGCC 8 cut(s) 190, 203, 320, 387, 742, 842, 890, 1253
BshNI GGYRCC 3 cut(s) 450, 565, 685
BsiEI CGRYCG 1 cut(s) 1179
BsiHKCI CYCGRG 3 cut(s) 762, 957, 1073
BsiSI CCGG 2 cut(s) 293, 894
BslFI GGGAC 3 cut(s) 854, 1078, 1082
BsmAI GTCTC 4 cut(s) 113, 606, 824, 1060
BsmFI GGGAC 3 cut(s) 854, 1078, 1082
BsnI GGCC 8 cut(s) 190, 203, 320, 387, 742, 842, 890, 1253
Bso31I GGTCTC 1 cut(s) 824
BsoBI CYCGRG 3 cut(s) 762, 957, 1073
Bsp120I GGGCCC 1 cut(s) 840
Bsp1286I GDGCHC 2 cut(s) 690, 844
Bsp143I GATC 1 cut(s) 1126
BspANI GGCC 8 cut(s) 190, 203, 320, 387, 742, 842, 890, 1253
BspCNI CTCAG 3 cut(s) 174, 540, 652
BspHI TCATGA 1 cut(s) 313
BspMAI CTGCAG 1 cut(s) 172
BspMI ACCTGC 1 cut(s) 529
BspOI GCTAGC 1 cut(s) 99
BspT107I GGYRCC 3 cut(s) 450, 565, 685
BspTNI GGTCTC 1 cut(s) 824
BsrBI CCGCTC 2 cut(s) 223, 1078
BsrFI RCCGGY 1 cut(s) 292
BsrI ACTGG 4 cut(s) 127, 459, 662, 701
BssAI RCCGGY 1 cut(s) 292
BssECI CCNNGG 6 cut(s) 331, 477, 605, 1046, 1140, 1260
BssMI GATC 1 cut(s) 1126
BssNAI GTATAC 1 cut(s) 511
BssNI GRCGYC 2 cut(s) 16, 566
BssSI CACGAG 1 cut(s) 1016
BssT1I CCWWGG 1 cut(s) 1140
Bst1107I GTATAC 1 cut(s) 511
Bst2BI CACGAG 1 cut(s) 1016
Bst2UI CCWGG 4 cut(s) 13, 240, 332, 1048
Bst4CI ACNGT 5 cut(s) 164, 199, 215, 478, 886
Bst6I CTCTTC 2 cut(s) 978, 1229
BstACI GRCGYC 2 cut(s) 16, 566
BstBAI YACGTR 2 cut(s) 158, 514
BstC8I GCNNGC 8 cut(s) 78, 97, 236, 260, 294, 651, 844, 848
BstDEI CTNAG 4 cut(s) 182, 548, 570, 639
BstDSI CCRYGG 3 cut(s) 477, 605, 1260
BstENI CCTNNNNNAGG 1 cut(s) 895
BstF5I GGATG 1 cut(s) 49
BstH2I RGCGCY 3 cut(s) 437, 523, 569
BstHHI GCGC 4 cut(s) 258, 436, 522, 568
BstKTI GATC 1 cut(s) 1129
BstMAI GTCTC 4 cut(s) 113, 606, 824, 1060
BstMBI GATC 1 cut(s) 1126
BstMCI CGRYCG 1 cut(s) 1179
BstMWI GCNNNNNNNGC 8 cut(s) 187, 302, 433, 442, 528, 635, 724, 1187
BstNI CCWGG 4 cut(s) 13, 240, 332, 1048
BstNSI RCATGY 2 cut(s) 418, 1093
BstSCI CCNGG 4 cut(s) 11, 238, 330, 1046
BstSFI CTRYAG 1 cut(s) 168
BstSLI GKGCMC 2 cut(s) 690, 844
BstV1I GCAGC 7 cut(s) 34, 292, 564, 622, 830, 999, 1148
BstXI CCANNNNNNTGG 1 cut(s) 1261
BstZ17I GTATAC 1 cut(s) 511
BsuRI GGCC 8 cut(s) 190, 203, 320, 387, 742, 842, 890, 1253
BtgI CCRYGG 3 cut(s) 477, 605, 1260
BtgZI GCGATG 1 cut(s) 1096
BtsCI GGATG 1 cut(s) 49
BtsI GCAGTG 1 cut(s) 538
BtsIMutI CAGTG 4 cut(s) 105, 538, 708, 798
BveI ACCTGC 1 cut(s) 529
Cac8I GCNNGC 8 cut(s) 78, 97, 236, 260, 294, 651, 844, 848
CciI TCATGA 1 cut(s) 313
CfoI GCGC 4 cut(s) 258, 436, 522, 568
Cfr10I RCCGGY 1 cut(s) 292
Cfr13I GGNCC 7 cut(s) 151, 188, 470, 840, 841, 868, 1069
CseI GACGC 1 cut(s) 5
Csp6I GTAC 3 cut(s) 165, 770, 1288
CspCI CAANNNNNGTGG 4 cut(s) 180, 215, 643, 678
CviAII CATG 5 cut(s) 147, 314, 415, 598, 1090
CviQI GTAC 3 cut(s) 165, 770, 1288
DdeI CTNAG 4 cut(s) 182, 548, 570, 639
DinI GGCGCC 1 cut(s) 567
DpnI GATC 1 cut(s) 1128
DpnII GATC 1 cut(s) 1126
EaeI YGGCCR 1 cut(s) 201
Eam1104I CTCTTC 2 cut(s) 978, 1229
EarI CTCTTC 2 cut(s) 978, 1229
EciI GGCGGA 3 cut(s) 221, 497, 1205
Eco130I CCWWGG 1 cut(s) 1140
Eco147I AGGCCT 1 cut(s) 742
Eco24I GRGCYC 1 cut(s) 844
Eco31I GGTCTC 1 cut(s) 824
Eco47I GGWCC 4 cut(s) 151, 470, 868, 1069
Eco57I CTGAAG 1 cut(s) 1148
Eco88I CYCGRG 3 cut(s) 762, 957, 1073
EcoNI CCTNNNNNAGG 1 cut(s) 895
EcoO109I RGGNCCY 4 cut(s) 151, 840, 868, 1069
EcoRI GAATTC 1 cut(s) 942
EcoRII CCWGG 4 cut(s) 11, 238, 330, 1046
EcoT14I CCWWGG 1 cut(s) 1140
EcoT38I GRGCYC 1 cut(s) 844
EgeI GGCGCC 1 cut(s) 567
EheI GGCGCC 1 cut(s) 567
ErhI CCWWGG 1 cut(s) 1140
FaeI CATG 5 cut(s) 150, 317, 418, 601, 1093
FaiI YATR 9 cut(s) 148, 303, 315, 416, 448, 511, 599, 937, 1091
FaqI GGGAC 3 cut(s) 854, 1078, 1082
FatI CATG 5 cut(s) 146, 313, 414, 597, 1089
FauI CCCGC 8 cut(s) 28, 119, 216, 267, 289, 603, 851, 879
FbaI TGATCA 1 cut(s) 1126
FblI GTMKAC 1 cut(s) 510
FokI GGATG 1 cut(s) 56
FriOI GRGCYC 1 cut(s) 844
FspBI CTAG 6 cut(s) 20, 30, 96, 753, 1100, 1133
GlaI GCGC 4 cut(s) 257, 435, 521, 567
GsaI CCCAGC 1 cut(s) 1099
GsuI CTGGAG 2 cut(s) 239, 261
HaeII RGCGCY 3 cut(s) 437, 523, 569
HaeIII GGCC 8 cut(s) 190, 203, 320, 387, 742, 842, 890, 1253
HapII CCGG 2 cut(s) 293, 894
HgaI GACGC 1 cut(s) 5
HhaI GCGC 4 cut(s) 258, 436, 522, 568
Hin1I GRCGYC 2 cut(s) 16, 566
Hin1II CATG 5 cut(s) 150, 317, 418, 601, 1093
Hin6I GCGC 4 cut(s) 256, 434, 520, 566
HinP1I GCGC 4 cut(s) 256, 434, 520, 566
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HinfI GANTC 5 cut(s) 140, 593, 923, 1159, 1172
HpaII CCGG 2 cut(s) 293, 894
HphI GGTGA 4 cut(s) 259, 739, 892, 1207
Hpy166II GTNNAC 2 cut(s) 211, 511
Hpy188I TCNGA 2 cut(s) 549, 642
Hpy188III TCNNGA 7 cut(s) 20, 218, 314, 580, 764, 947, 1063
Hpy8I GTNNAC 2 cut(s) 211, 511
Hpy99I CGWCG 2 cut(s) 1039, 1227
HpyAV CCTTC 6 cut(s) 271, 583, 667, 850, 871, 1243
HpyCH4III ACNGT 5 cut(s) 164, 199, 215, 478, 886
HpyCH4IV ACGT 3 cut(s) 157, 341, 513
HpyCH4V TGCA 4 cut(s) 170, 531, 818, 1015
HpyF10VI GCNNNNNNNGC 8 cut(s) 187, 302, 433, 442, 528, 635, 724, 1187
HpyF3I CTNAG 4 cut(s) 182, 548, 570, 639
HpySE526I ACGT 3 cut(s) 157, 341, 513
Hsp92I GRCGYC 2 cut(s) 16, 566
Hsp92II CATG 5 cut(s) 150, 317, 418, 601, 1093
HspAI GCGC 4 cut(s) 256, 434, 520, 566
KasI GGCGCC 1 cut(s) 565
KflI GGGWCCC 1 cut(s) 868
KroI GCCGGC 1 cut(s) 292
KroNI GCCGGC 1 cut(s) 294
Ksp22I TGATCA 1 cut(s) 1126
Kzo9I GATC 1 cut(s) 1126
LmnI GCTCC 3 cut(s) 107, 220, 1239
Lsp1109I GCAGC 7 cut(s) 34, 292, 564, 622, 830, 999, 1148
LweI GCATC 3 cut(s) 34, 805, 1006
MaeI CTAG 6 cut(s) 20, 30, 96, 753, 1100, 1133
MaeII ACGT 3 cut(s) 157, 341, 513
MaeIII GTNAC 4 cut(s) 158, 337, 745, 880
MalI GATC 1 cut(s) 1128
MbiI CCGCTC 2 cut(s) 223, 1078
MboI GATC 1 cut(s) 1126
MboII GAAGA 6 cut(s) 316, 865, 965, 1154, 1162, 1246
MhlI GDGCHC 2 cut(s) 690, 844
MluCI AATT 4 cut(s) 366, 402, 583, 942
Mly113I GGCGCC 1 cut(s) 566
MlyI GAGTC 1 cut(s) 149
MmeI TCCRAC 2 cut(s) 497, 1185
MroNI GCCGGC 1 cut(s) 292
MroXI GAANNNNTTC 1 cut(s) 404
MseI TTAA 2 cut(s) 575, 1146
MslI CAYNNNNRTG 1 cut(s) 1259
MspA1I CMGCKG 3 cut(s) 269, 635, 821
MspI CCGG 2 cut(s) 293, 894
MspR9I CCNGG 4 cut(s) 13, 240, 332, 1048
MvaI CCWGG 4 cut(s) 13, 240, 332, 1048
MwoI GCNNNNNNNGC 8 cut(s) 187, 302, 433, 442, 528, 635, 724, 1187
NaeI GCCGGC 1 cut(s) 294
NarI GGCGCC 1 cut(s) 566
NdeII GATC 1 cut(s) 1126
NgoMIV GCCGGC 1 cut(s) 292
NheI GCTAGC 1 cut(s) 95
NlaIII CATG 5 cut(s) 150, 317, 418, 601, 1093
NmuCI GTSAC 4 cut(s) 158, 337, 745, 880
NspI RCATGY 2 cut(s) 418, 1093
OliI CACNNNNGTG 1 cut(s) 1259
PaeR7I CTCGAG 1 cut(s) 1073
PagI TCATGA 1 cut(s) 313
PceI AGGCCT 1 cut(s) 742
PciI ACATGT 1 cut(s) 414
PcsI WCGNNNNNNNCGW 1 cut(s) 13
PdiI GCCGGC 1 cut(s) 294
PdmI GAANNNNTTC 1 cut(s) 404
PfeI GAWTC 4 cut(s) 593, 923, 1159, 1172
PleI GAGTC 1 cut(s) 148
PluTI GGCGCC 1 cut(s) 569
PpsI GAGTC 1 cut(s) 148
Ppu21I YACGTR 2 cut(s) 158, 514
PpuMI RGGWCCY 3 cut(s) 151, 868, 1069
PscI ACATGT 1 cut(s) 414
Psp5II RGGWCCY 3 cut(s) 151, 868, 1069
Psp6I CCWGG 4 cut(s) 11, 238, 330, 1046
PspFI CCCAGC 1 cut(s) 1095
PspGI CCWGG 4 cut(s) 11, 238, 330, 1046
PspOMI GGGCCC 1 cut(s) 840
PspPI GGNCC 7 cut(s) 151, 188, 470, 840, 841, 868, 1069
PspPPI RGGWCCY 3 cut(s) 151, 868, 1069
PspXI VCTCGAGB 1 cut(s) 1073
PstI CTGCAG 1 cut(s) 172
PvuII CAGCTG 1 cut(s) 821
RsaI GTAC 3 cut(s) 166, 771, 1289
RsaNI GTAC 3 cut(s) 165, 770, 1288
RseI CAYNNNNRTG 1 cut(s) 1259
SaqAI TTAA 2 cut(s) 575, 1146
Sau3AI GATC 1 cut(s) 1126
Sau96I GGNCC 7 cut(s) 151, 188, 470, 840, 841, 868, 1069
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 4 cut(s) 13, 240, 332, 1048
SduI GDGCHC 2 cut(s) 690, 844
SfaNI GCATC 3 cut(s) 34, 805, 1006
SfcI CTRYAG 1 cut(s) 168
SfoI GGCGCC 1 cut(s) 567
Sfr274I CTCGAG 1 cut(s) 1073
SinI GGWCC 4 cut(s) 151, 470, 868, 1069
SlaI CTCGAG 1 cut(s) 1073
SmiMI CAYNNNNRTG 1 cut(s) 1259
SmlI CTYRAG 2 cut(s) 773, 1073
SmoI CTYRAG 2 cut(s) 773, 1073
Sse9I AATT 4 cut(s) 366, 402, 583, 942
SseBI AGGCCT 1 cut(s) 742
SspDI GGCGCC 1 cut(s) 565
SspMI CTAG 6 cut(s) 20, 30, 96, 753, 1100, 1133
StuI AGGCCT 1 cut(s) 742
StyD4I CCNGG 4 cut(s) 11, 238, 330, 1046
StyI CCWWGG 1 cut(s) 1140
TaaI ACNGT 5 cut(s) 164, 199, 215, 478, 886
TaiI ACGT 3 cut(s) 160, 344, 516
TaqI TCGA 8 cut(s) 579, 737, 908, 940, 1037, 1062, 1074, 1175
TaqII GACCGA 1 cut(s) 966
TasI AATT 4 cut(s) 366, 402, 583, 942
TatI WGTACW 1 cut(s) 1287
TauI GCSGC 7 cut(s) 53, 95, 102, 206, 566, 787, 790
TfiI GAWTC 4 cut(s) 593, 923, 1159, 1172
Tru1I TTAA 2 cut(s) 575, 1146
Tru9I TTAA 2 cut(s) 575, 1146
TscAI CASTG 4 cut(s) 112, 538, 708, 805
TseFI GTSAC 4 cut(s) 158, 337, 745, 880
TseI GCWGC 7 cut(s) 47, 305, 552, 635, 818, 1012, 1136
Tsp45I GTSAC 4 cut(s) 158, 337, 745, 880
TspDTI ATGAA 3 cut(s) 302, 746, 819
TspGWI ACGGA 1 cut(s) 594
TspRI CASTG 4 cut(s) 112, 538, 708, 805
VpaK11BI GGWCC 4 cut(s) 151, 470, 868, 1069
XagI CCTNNNNNAGG 1 cut(s) 895
XapI RAATTY 4 cut(s) 366, 402, 583, 942
XbaI TCTAGA 1 cut(s) 19
XceI RCATGY 2 cut(s) 418, 1093
XcmI CCANNNNNNNNNTGG 1 cut(s) 530
XhoI CTCGAG 1 cut(s) 1073
XmiI GTMKAC 1 cut(s) 510
XmnI GAANNNNTTC 1 cut(s) 404
XspI CTAG 6 cut(s) 20, 30, 96, 753, 1100, 1133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.