Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000744.1

Orthogroup ID

OG0031094

Physical Location & Seq

Genomic Coordinates Reverse (-)

442756 .. 445178

Gene Structure 2423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

atggaaccacgaactctgcaactaatggagttacaagcccagcaaccaaccgaggagggaggaagcatccaagcagccgggagtagtgccaacacgcctatcaggccgaccaataaccggtggactcccacaccagatcaactaagaatcctccaggagctttactatgacaaggtgcttaaatgcccaactccagagcagattcaagagatctgccttaatctgcaacaatatgggcagatcgaggacaagaacgtcttcttttggttccagaaccttaaggctcgtgagaggcagaagttgagggaatttcggaacgttcgggttggtggatctctcgatctcaattttggatccactagttctactgatgatggtaggtccattgatctaaactttggttccactggttctactagtactgacagatccattgatctaaatttgggtcacgtgtcggctttggtgttgatggatcgatcatggaacaacgaggagaatatcaccaggagattgaaacccttccactgttccccatgcacggtgaggacatctttggcaacacgaagactacttccgaggaaggtagcgcatatggttggtactccggtggctgggacgacaacaatggtggttcttgcatttctcttgagcttagtctcaactcctccggagctgctgacatggcttaatcgagcagagcgagaaccactgggaagtgaggagaacttgctaaagtgtgactttagcttggctgggttgctagggcgttacccttgcttggctggttctgtaaccgttgtggtcgcggcactaccgtcggctcccgaggagactaggaccgaagtacgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

284

Amino Acids

31.69

Weight (kDa)

6.84

Isoelectric Point (pI)

51.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	39 - 99	3.5e-10	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031094)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000744.1_g000127 Rmu_sc0003859.1_g000009

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	254
AccII	CGCG	1 cut(s)	809
AccIII	TCCGGA	1 cut(s)	670
AciI	CCGC	1 cut(s)	809
AclI	AACGTT	1 cut(s)	318
AclWI	GGATC	5 cut(s)	340, 348, 361, 423, 483
AcsI	RAATTY	2 cut(s)	308, 442
AcvI	CACGTG	1 cut(s)	454
AfaI	GTAC	3 cut(s)	421, 604, 849
AfiI	CCNNNNNNNGG	4 cut(s)	117, 541, 614, 781
AflII	CTTAAG	1 cut(s)	278
AflIII	ACRYGT	1 cut(s)	453
AgeI	ACCGGT	1 cut(s)	117
AgsI	TTSAA	2 cut(s)	206, 517
AhlI	ACTAGT	2 cut(s)	359, 416
AjnI	CCWGG	2 cut(s)	153, 506
AluBI	AGCT	4 cut(s)	160, 654, 676, 750
AluI	AGCT	4 cut(s)	160, 654, 676, 750
Alw26I	GTCTC	2 cut(s)	664, 827
AlwI	GGATC	5 cut(s)	340, 348, 361, 423, 483
Ama87I	CYCGRG	1 cut(s)	827
Aor13HI	TCCGGA	1 cut(s)	670
AoxI	GGCC	1 cut(s)	104
ApeKI	GCWGC	2 cut(s)	74, 676
ApoI	RAATTY	2 cut(s)	308, 442
AsiGI	ACCGGT	1 cut(s)	117
Asp700I	GAANNNNTTC	2 cut(s)	257, 521
AspLEI	GCGC	1 cut(s)	592
AspS9I	GGNCC	2 cut(s)	381, 840
AsuC2I	CCSGG	1 cut(s)	79
AsuHPI	GGTGA	2 cut(s)	496, 556
AvaI	CYCGRG	1 cut(s)	827
AvaII	GGWCC	2 cut(s)	381, 840
BaeI	ACNNNNGTAYC	2 cut(s)	594, 627
BamHI	GGATCC	1 cut(s)	353
BauI	CACGAG	1 cut(s)	285
BbrPI	CACGTG	1 cut(s)	454
BbsI	GAAGAC	2 cut(s)	250, 574
BbvI	GCAGC	2 cut(s)	86, 663
BccI	CCATC	2 cut(s)	368, 466
BcgI	CGANNNNNNTGC	2 cut(s)	801, 835
BciT130I	CCWGG	2 cut(s)	155, 508
BcnI	CCSGG	1 cut(s)	79
BcoDI	GTCTC	2 cut(s)	664, 827
BcuI	ACTAGT	2 cut(s)	359, 416
BfaI	CTAG	4 cut(s)	360, 417, 764, 837
BfrI	CTTAAG	1 cut(s)	278
BglI	GCCNNNNNGGC	1 cut(s)	103
BglII	AGATCT	1 cut(s)	210
BisI	GCNGC	3 cut(s)	75, 677, 810
BlsI	GCNGC	3 cut(s)	76, 678, 811
BmcAI	AGTACT	1 cut(s)	421
Bme1390I	CCNGG	3 cut(s)	79, 155, 508
Bme18I	GGWCC	2 cut(s)	381, 840
BmeT110I	CYCGRG	1 cut(s)	827
BmgT120I	GGNCC	2 cut(s)	381, 840
BmiI	GGNNCC	5 cut(s)	6, 269, 355, 403, 825
BmrFI	CCNGG	3 cut(s)	79, 155, 508
BmrI	ACTGGG	1 cut(s)	722
BmsI	GCATC	1 cut(s)	75
BmuI	ACTGGG	1 cut(s)	722
BpiI	GAAGAC	2 cut(s)	250, 574
BpmI	CTGGAG	2 cut(s)	137, 177
BpuEI	CTTGAG	1 cut(s)	670
BpuMI	CCSGG	1 cut(s)	79
Bsa29I	ATCGAT	1 cut(s)	478
BsaAI	YACGTR	1 cut(s)	454
BsaJI	CCNNGG	3 cut(s)	51, 578, 828
BsaWI	WCCGGW	3 cut(s)	117, 607, 670
Bsc4I	CCNNNNNNNGG	4 cut(s)	117, 541, 614, 781
Bse118I	RCCGGY	1 cut(s)	117
Bse1I	ACTGG	2 cut(s)	412, 717
BseAI	TCCGGA	1 cut(s)	670
BseBI	CCWGG	2 cut(s)	155, 508
BseCI	ATCGAT	1 cut(s)	478
BseDI	CCNNGG	3 cut(s)	51, 578, 828
BseGI	GGATG	1 cut(s)	66
BseLI	CCNNNNNNNGG	4 cut(s)	117, 541, 614, 781
BseNI	ACTGG	2 cut(s)	412, 717
BseRI	GAGGAG	5 cut(s)	68, 509, 657, 737, 845
BseXI	GCAGC	2 cut(s)	86, 663
BseYI	CCCAGC	3 cut(s)	39, 614, 755
Bsh1236I	CGCG	1 cut(s)	809
BshFI	GGCC	1 cut(s)	106
BshTI	ACCGGT	1 cut(s)	117
BshVI	ATCGAT	1 cut(s)	478
BsiHKCI	CYCGRG	1 cut(s)	827
BsiSI	CCGG	4 cut(s)	78, 118, 608, 671
BslFI	GGGAC	1 cut(s)	631
BslI	CCNNNNNNNGG	4 cut(s)	117, 541, 614, 781
BsmAI	GTCTC	2 cut(s)	664, 827
BsmFI	GGGAC	1 cut(s)	631
BsnI	GGCC	1 cut(s)	106
BsoBI	CYCGRG	1 cut(s)	827
Bsp13I	TCCGGA	1 cut(s)	670
BspACI	CCGC	1 cut(s)	809
BspANI	GGCC	1 cut(s)	106
BspDI	ATCGAT	1 cut(s)	478
BspEI	TCCGGA	1 cut(s)	670
BspFNI	CGCG	1 cut(s)	809
BspLI	GGNNCC	5 cut(s)	6, 269, 355, 403, 825
BspPI	GGATC	5 cut(s)	340, 348, 361, 423, 483
BspTI	CTTAAG	1 cut(s)	278
BsrFI	RCCGGY	1 cut(s)	117
BsrI	ACTGG	2 cut(s)	412, 717
BssAI	RCCGGY	1 cut(s)	117
BssECI	CCNNGG	3 cut(s)	51, 578, 828
BssSI	CACGAG	1 cut(s)	285
Bst2BI	CACGAG	1 cut(s)	285
Bst2UI	CCWGG	2 cut(s)	155, 508
Bst4CI	ACNGT	4 cut(s)	530, 544, 799, 819
BstAFI	CTTAAG	1 cut(s)	278
BstBAI	YACGTR	1 cut(s)	454
BstDEI	CTNAG	2 cut(s)	143, 655
BstF5I	GGATG	1 cut(s)	66
BstFNI	CGCG	1 cut(s)	809
BstHHI	GCGC	1 cut(s)	592
BstMAI	GTCTC	2 cut(s)	664, 827
BstMWI	GCNNNNNNNGC	2 cut(s)	103, 685
BstNI	CCWGG	2 cut(s)	155, 508
BstSCI	CCNGG	3 cut(s)	77, 153, 506
BstUI	CGCG	1 cut(s)	809
BstV1I	GCAGC	2 cut(s)	86, 663
BstV2I	GAAGAC	2 cut(s)	250, 574
BstX2I	RGATCY	4 cut(s)	210, 332, 353, 428
BstYI	RGATCY	4 cut(s)	210, 332, 353, 428
Bsu15I	ATCGAT	1 cut(s)	478
BsuRI	GGCC	1 cut(s)	106
BsuTUI	ATCGAT	1 cut(s)	478
BtsCI	GGATG	1 cut(s)	66
BtsIMutI	CAGTG	3 cut(s)	405, 526, 710
CfoI	GCGC	1 cut(s)	592
Cfr10I	RCCGGY	1 cut(s)	117
Cfr13I	GGNCC	2 cut(s)	381, 840
ClaI	ATCGAT	1 cut(s)	478
Csp6I	GTAC	3 cut(s)	420, 603, 848
CspAI	ACCGGT	1 cut(s)	117
CspCI	CAANNNNNGTGG	2 cut(s)	612, 647
CviAII	CATG	3 cut(s)	483, 537, 684
CviQI	GTAC	3 cut(s)	420, 603, 848
DdeI	CTNAG	2 cut(s)	143, 655
DrdI	GACNNNNNNGTC	1 cut(s)	254
DseDI	GACNNNNNNGTC	1 cut(s)	254
Eco47I	GGWCC	2 cut(s)	381, 840
Eco72I	CACGTG	1 cut(s)	454
Eco88I	CYCGRG	1 cut(s)	827
EcoRII	CCWGG	2 cut(s)	153, 506
FaeI	CATG	3 cut(s)	486, 540, 687
FaiI	YATR	7 cut(s)	168, 234, 484, 538, 594, 596, 685
FalI	AAGNNNNNCTT	4 cut(s)	242, 274, 728, 760
FaqI	GGGAC	1 cut(s)	631
FatI	CATG	3 cut(s)	482, 536, 683
FauNDI	CATATG	1 cut(s)	594
Fnu4HI	GCNGC	3 cut(s)	75, 677, 810
FokI	GGATG	1 cut(s)	53
Fsp4HI	GCNGC	3 cut(s)	75, 677, 810
FspBI	CTAG	4 cut(s)	360, 417, 764, 837
GlaI	GCGC	1 cut(s)	591
GluI	GCNGC	3 cut(s)	75, 677, 810
GsaI	CCCAGC	3 cut(s)	43, 618, 759
GsuI	CTGGAG	2 cut(s)	137, 177
HaeIII	GGCC	1 cut(s)	106
HapII	CCGG	4 cut(s)	78, 118, 608, 671
HhaI	GCGC	1 cut(s)	592
Hin1II	CATG	3 cut(s)	486, 540, 687
Hin6I	GCGC	1 cut(s)	590
HinP1I	GCGC	1 cut(s)	590
HinfI	GANTC	3 cut(s)	124, 147, 202
HpaII	CCGG	4 cut(s)	78, 118, 608, 671
HphI	GGTGA	2 cut(s)	496, 556
Hpy166II	GTNNAC	1 cut(s)	123
Hpy188I	TCNGA	2 cut(s)	315, 579
Hpy188III	TCNNGA	8 cut(s)	194, 206, 271, 287, 338, 649, 671, 827
Hpy8I	GTNNAC	1 cut(s)	123
Hpy99I	CGWCG	1 cut(s)	823
HpyAV	CCTTC	2 cut(s)	532, 577
HpyCH4III	ACNGT	4 cut(s)	530, 544, 799, 819
HpyCH4IV	ACGT	4 cut(s)	255, 318, 453, 850
HpyCH4V	TGCA	4 cut(s)	19, 226, 540, 641
HpyF10VI	GCNNNNNNNGC	2 cut(s)	103, 685
HpyF3I	CTNAG	2 cut(s)	143, 655
HpySE526I	ACGT	4 cut(s)	255, 318, 453, 850
Hsp92II	CATG	3 cut(s)	486, 540, 687
HspAI	GCGC	1 cut(s)	590
Kpn2I	TCCGGA	1 cut(s)	670
LmnI	GCTCC	3 cut(s)	157, 673, 829
Lsp1109I	GCAGC	2 cut(s)	86, 663
LweI	GCATC	1 cut(s)	75
MaeI	CTAG	4 cut(s)	360, 417, 764, 837
MaeII	ACGT	4 cut(s)	255, 318, 453, 850
MaeIII	GTNAC	5 cut(s)	30, 449, 740, 770, 793
MboII	GAAGA	2 cut(s)	250, 579
MflI	RGATCY	4 cut(s)	210, 332, 353, 428
MluCI	AATT	3 cut(s)	308, 346, 442
MlyI	GAGTC	1 cut(s)	118
MroI	TCCGGA	1 cut(s)	670
MroXI	GAANNNNTTC	2 cut(s)	257, 521
MseI	TTAA	4 cut(s)	180, 219, 279, 690
MspCI	CTTAAG	1 cut(s)	278
MspI	CCGG	4 cut(s)	78, 118, 608, 671
MspR9I	CCNGG	3 cut(s)	79, 155, 508
MvaI	CCWGG	2 cut(s)	155, 508
MvnI	CGCG	1 cut(s)	809
MwoI	GCNNNNNNNGC	2 cut(s)	103, 685
NciI	CCSGG	1 cut(s)	79
NdeI	CATATG	1 cut(s)	594
NlaIII	CATG	3 cut(s)	486, 540, 687
NlaIV	GGNNCC	5 cut(s)	6, 269, 355, 403, 825
NmuCI	GTSAC	2 cut(s)	449, 740
PcsI	WCGNNNNNNNCGW	1 cut(s)	700
PdmI	GAANNNNTTC	2 cut(s)	257, 521
PfeI	GAWTC	2 cut(s)	147, 202
PfoI	TCCNGGA	1 cut(s)	153
PinAI	ACCGGT	1 cut(s)	117
PkrI	GCNGC	3 cut(s)	76, 678, 811
PleI	GAGTC	1 cut(s)	118
PmaCI	CACGTG	1 cut(s)	454
PmlI	CACGTG	1 cut(s)	454
PpsI	GAGTC	1 cut(s)	118
Ppu21I	YACGTR	1 cut(s)	454
Psp1406I	AACGTT	1 cut(s)	318
Psp6I	CCWGG	2 cut(s)	153, 506
PspCI	CACGTG	1 cut(s)	454
PspFI	CCCAGC	3 cut(s)	39, 614, 755
PspGI	CCWGG	2 cut(s)	153, 506
PspN4I	GGNNCC	5 cut(s)	6, 269, 355, 403, 825
PspPI	GGNCC	2 cut(s)	381, 840
PsuI	RGATCY	4 cut(s)	210, 332, 353, 428
RsaI	GTAC	3 cut(s)	421, 604, 849
RsaNI	GTAC	3 cut(s)	420, 603, 848
SaqAI	TTAA	4 cut(s)	180, 219, 279, 690
SatI	GCNGC	3 cut(s)	75, 677, 810
Sau96I	GGNCC	2 cut(s)	381, 840
ScaI	AGTACT	1 cut(s)	421
SchI	GAGTC	1 cut(s)	118
ScrFI	CCNGG	3 cut(s)	79, 155, 508
SfaNI	GCATC	1 cut(s)	75
SinI	GGWCC	2 cut(s)	381, 840
SmlI	CTYRAG	2 cut(s)	278, 649
SmoI	CTYRAG	2 cut(s)	278, 649
SpeI	ACTAGT	2 cut(s)	359, 416
Sse9I	AATT	3 cut(s)	308, 346, 442
SsiI	CCGC	1 cut(s)	809
SspMI	CTAG	4 cut(s)	360, 417, 764, 837
StyD4I	CCNGG	3 cut(s)	77, 153, 506
TaaI	ACNGT	4 cut(s)	530, 544, 799, 819
TaiI	ACGT	4 cut(s)	258, 321, 456, 853
TaqI	TCGA	4 cut(s)	243, 339, 478, 694
TasI	AATT	3 cut(s)	308, 346, 442
TatI	WGTACW	1 cut(s)	419
TauI	GCSGC	1 cut(s)	812
TfiI	GAWTC	2 cut(s)	147, 202
Tru1I	TTAA	4 cut(s)	180, 219, 279, 690
Tru9I	TTAA	4 cut(s)	180, 219, 279, 690
TscAI	CASTG	3 cut(s)	412, 533, 717
TseFI	GTSAC	2 cut(s)	449, 740
TseI	GCWGC	2 cut(s)	74, 676
Tsp45I	GTSAC	2 cut(s)	449, 740
TspRI	CASTG	3 cut(s)	412, 533, 717
Vha464I	CTTAAG	1 cut(s)	278
VpaK11BI	GGWCC	2 cut(s)	381, 840
XapI	RAATTY	2 cut(s)	308, 442
XmnI	GAANNNNTTC	2 cut(s)	257, 521
XspI	CTAG	4 cut(s)	360, 417, 764, 837
ZrmI	AGTACT	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.