Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003859.1

Orthogroup ID

OG0031094

Physical Location & Seq

Genomic Coordinates Forward (+)

22286 .. 22978

Gene Structure 693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003859.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

atggaaccacgaactctgcaactaatggagttacaagcccagcaaccaaccgaggagggaggaagcatccaagcagccgggagtagtgccaacacgcctatcaggtcgaccaataaccgatggactcccacaccagatcaactaagaatcctccatgagctttactatgacaaggtgcttaaatgcccaactccagagcagattcaagagatctgccttaatctgcaacaatatgggcagatcgaggacaagaacgttttcttttggttccagaacctcaaggctcgtgagaggcagaagttgagggaatttcggaacgttcgggttggtggatctctcgatctcaattttggatccactagttctactgatgatggtaggcccattgatctaaactttggttccactggttctactagtactgacagatccattgatctaaattttgggtcacgtgtcggctatgatgttgatggatcgatcatggaacaacgaggagaatatcaccaggagattgaaatccttccactgttccccatgcacggtgagaacgtccttagtaacccgaagactacttccgaggaaggtagcgcatatggttggtactccggtggctgggacgacaacaatggtggttcttgcatttctcttgaggttagtctcaactcctccggagctgctgacatggcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

230

Amino Acids

25.62

Weight (kDa)

4.63

Isoelectric Point (pI)

49.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031094)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000744.1_g000127 Rmu_sc0003859.1_g000009

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	107
AccIII	TCCGGA	1 cut(s)	671
AclI	AACGTT	2 cut(s)	255, 318
AclWI	GGATC	5 cut(s)	340, 348, 361, 423, 484
AcsI	RAATTY	2 cut(s)	308, 442
AcvI	CACGTG	1 cut(s)	455
AfaI	GTAC	2 cut(s)	421, 605
AfiI	CCNNNNNNNGG	2 cut(s)	542, 615
AflIII	ACRYGT	1 cut(s)	454
AgsI	TTSAA	2 cut(s)	206, 518
AhlI	ACTAGT	2 cut(s)	359, 416
AjnI	CCWGG	1 cut(s)	507
AluBI	AGCT	2 cut(s)	160, 677
AluI	AGCT	2 cut(s)	160, 677
Alw26I	GTCTC	1 cut(s)	665
AlwI	GGATC	5 cut(s)	340, 348, 361, 423, 484
Aor13HI	TCCGGA	1 cut(s)	671
AoxI	GGCC	1 cut(s)	380
ApeKI	GCWGC	2 cut(s)	74, 677
ApoI	RAATTY	2 cut(s)	308, 442
Asp700I	GAANNNNTTC	2 cut(s)	257, 522
AspLEI	GCGC	1 cut(s)	593
AspS9I	GGNCC	1 cut(s)	381
AsuC2I	CCSGG	1 cut(s)	79
AsuHPI	GGTGA	2 cut(s)	497, 557
BaeI	ACNNNNGTAYC	2 cut(s)	595, 628
BamHI	GGATCC	1 cut(s)	353
BauI	CACGAG	1 cut(s)	285
BbrPI	CACGTG	1 cut(s)	455
BbsI	GAAGAC	1 cut(s)	575
BbvI	GCAGC	2 cut(s)	86, 664
BccI	CCATC	3 cut(s)	114, 368, 467
BciT130I	CCWGG	1 cut(s)	509
BcnI	CCSGG	1 cut(s)	79
BcoDI	GTCTC	1 cut(s)	665
BcuI	ACTAGT	2 cut(s)	359, 416
BfaI	CTAG	2 cut(s)	360, 417
BglII	AGATCT	1 cut(s)	210
BisI	GCNGC	2 cut(s)	75, 678
BlsI	GCNGC	2 cut(s)	76, 679
BmcAI	AGTACT	1 cut(s)	421
Bme1390I	CCNGG	2 cut(s)	79, 509
BmgT120I	GGNCC	1 cut(s)	381
BmiI	GGNNCC	4 cut(s)	6, 269, 355, 403
BmrFI	CCNGG	2 cut(s)	79, 509
BmsI	GCATC	1 cut(s)	75
BpiI	GAAGAC	1 cut(s)	575
BpmI	CTGGAG	1 cut(s)	177
BpuEI	CTTGAG	2 cut(s)	263, 671
BpuMI	CCSGG	1 cut(s)	79
Bsa29I	ATCGAT	1 cut(s)	479
BsaAI	YACGTR	1 cut(s)	455
BsaBI	GATNNNNATC	1 cut(s)	518
BsaJI	CCNNGG	2 cut(s)	51, 579
BsaWI	WCCGGW	2 cut(s)	608, 671
Bsc4I	CCNNNNNNNGG	2 cut(s)	542, 615
Bse1I	ACTGG	1 cut(s)	412
Bse8I	GATNNNNATC	1 cut(s)	518
BseAI	TCCGGA	1 cut(s)	671
BseBI	CCWGG	1 cut(s)	509
BseCI	ATCGAT	1 cut(s)	479
BseDI	CCNNGG	2 cut(s)	51, 579
BseGI	GGATG	1 cut(s)	66
BseJI	GATNNNNATC	1 cut(s)	518
BseLI	CCNNNNNNNGG	2 cut(s)	542, 615
BseNI	ACTGG	1 cut(s)	412
BseRI	GAGGAG	3 cut(s)	68, 510, 658
BseXI	GCAGC	2 cut(s)	86, 664
BseYI	CCCAGC	2 cut(s)	39, 615
BshFI	GGCC	1 cut(s)	382
BshVI	ATCGAT	1 cut(s)	479
BsiSI	CCGG	3 cut(s)	78, 609, 672
BslFI	GGGAC	1 cut(s)	632
BslI	CCNNNNNNNGG	2 cut(s)	542, 615
BsmAI	GTCTC	1 cut(s)	665
BsmFI	GGGAC	1 cut(s)	632
BsnI	GGCC	1 cut(s)	382
Bsp13I	TCCGGA	1 cut(s)	671
BspANI	GGCC	1 cut(s)	382
BspDI	ATCGAT	1 cut(s)	479
BspEI	TCCGGA	1 cut(s)	671
BspLI	GGNNCC	4 cut(s)	6, 269, 355, 403
BspPI	GGATC	5 cut(s)	340, 348, 361, 423, 484
BsrI	ACTGG	1 cut(s)	412
BssECI	CCNNGG	2 cut(s)	51, 579
BssSI	CACGAG	1 cut(s)	285
Bst2BI	CACGAG	1 cut(s)	285
Bst2UI	CCWGG	1 cut(s)	509
Bst4CI	ACNGT	2 cut(s)	531, 545
BstBAI	YACGTR	1 cut(s)	455
BstDEI	CTNAG	3 cut(s)	143, 557, 690
BstF5I	GGATG	1 cut(s)	66
BstHHI	GCGC	1 cut(s)	593
BstMAI	GTCTC	1 cut(s)	665
BstMWI	GCNNNNNNNGC	1 cut(s)	686
BstNI	CCWGG	1 cut(s)	509
BstSCI	CCNGG	2 cut(s)	77, 507
BstV1I	GCAGC	2 cut(s)	86, 664
BstV2I	GAAGAC	1 cut(s)	575
BstX2I	RGATCY	4 cut(s)	210, 332, 353, 428
BstYI	RGATCY	4 cut(s)	210, 332, 353, 428
Bsu15I	ATCGAT	1 cut(s)	479
BsuRI	GGCC	1 cut(s)	382
BsuTUI	ATCGAT	1 cut(s)	479
BtsCI	GGATG	1 cut(s)	66
BtsIMutI	CAGTG	2 cut(s)	405, 527
CfoI	GCGC	1 cut(s)	593
Cfr13I	GGNCC	1 cut(s)	381
ClaI	ATCGAT	1 cut(s)	479
Csp6I	GTAC	2 cut(s)	420, 604
CspCI	CAANNNNNGTGG	2 cut(s)	613, 648
CviAII	CATG	4 cut(s)	155, 484, 538, 685
CviJI	RGCY	9 cut(s)	38, 77, 160, 284, 382, 462, 615, 677, 689
CviKI_1	RGCY	9 cut(s)	38, 77, 160, 284, 382, 462, 615, 677, 689
CviQI	GTAC	2 cut(s)	420, 604
DdeI	CTNAG	3 cut(s)	143, 557, 690
Eco72I	CACGTG	1 cut(s)	455
EcoRII	CCWGG	1 cut(s)	507
FaeI	CATG	4 cut(s)	158, 487, 541, 688
FaiI	YATR	9 cut(s)	156, 168, 234, 465, 485, 539, 595, 597, 686
FaqI	GGGAC	1 cut(s)	632
FatI	CATG	4 cut(s)	154, 483, 537, 684
FauNDI	CATATG	1 cut(s)	595
FblI	GTMKAC	1 cut(s)	107
Fnu4HI	GCNGC	2 cut(s)	75, 678
FokI	GGATG	1 cut(s)	53
Fsp4HI	GCNGC	2 cut(s)	75, 678
FspBI	CTAG	2 cut(s)	360, 417
GlaI	GCGC	1 cut(s)	592
GluI	GCNGC	2 cut(s)	75, 678
GsaI	CCCAGC	2 cut(s)	43, 619
GsuI	CTGGAG	1 cut(s)	177
HaeIII	GGCC	1 cut(s)	382
HapII	CCGG	3 cut(s)	78, 609, 672
HhaI	GCGC	1 cut(s)	593
Hin1II	CATG	4 cut(s)	158, 487, 541, 688
Hin6I	GCGC	1 cut(s)	591
HinP1I	GCGC	1 cut(s)	591
HincII	GTYRAC	1 cut(s)	108
HindII	GTYRAC	1 cut(s)	108
HinfI	GANTC	3 cut(s)	124, 147, 202
HpaII	CCGG	3 cut(s)	78, 609, 672
HphI	GGTGA	2 cut(s)	497, 557
Hpy166II	GTNNAC	1 cut(s)	108
Hpy188I	TCNGA	2 cut(s)	315, 580
Hpy188III	TCNNGA	7 cut(s)	194, 206, 271, 287, 338, 650, 672
Hpy8I	GTNNAC	1 cut(s)	108
HpyAV	CCTTC	2 cut(s)	533, 578
HpyCH4III	ACNGT	2 cut(s)	531, 545
HpyCH4IV	ACGT	4 cut(s)	255, 318, 454, 552
HpyCH4V	TGCA	4 cut(s)	19, 226, 541, 642
HpyF10VI	GCNNNNNNNGC	1 cut(s)	686
HpyF3I	CTNAG	3 cut(s)	143, 557, 690
HpySE526I	ACGT	4 cut(s)	255, 318, 454, 552
Hsp92II	CATG	4 cut(s)	158, 487, 541, 688
HspAI	GCGC	1 cut(s)	591
Kpn2I	TCCGGA	1 cut(s)	671
LmnI	GCTCC	1 cut(s)	674
Lsp1109I	GCAGC	2 cut(s)	86, 664
LweI	GCATC	1 cut(s)	75
MaeI	CTAG	2 cut(s)	360, 417
MaeII	ACGT	4 cut(s)	255, 318, 454, 552
MaeIII	GTNAC	3 cut(s)	30, 450, 560
MboII	GAAGA	1 cut(s)	580
MflI	RGATCY	4 cut(s)	210, 332, 353, 428
MluCI	AATT	3 cut(s)	308, 346, 442
MlyI	GAGTC	1 cut(s)	118
MroI	TCCGGA	1 cut(s)	671
MroXI	GAANNNNTTC	2 cut(s)	257, 522
MseI	TTAA	2 cut(s)	180, 219
MspI	CCGG	3 cut(s)	78, 609, 672
MspR9I	CCNGG	2 cut(s)	79, 509
MvaI	CCWGG	1 cut(s)	509
MwoI	GCNNNNNNNGC	1 cut(s)	686
NciI	CCSGG	1 cut(s)	79
NdeI	CATATG	1 cut(s)	595
NlaIII	CATG	4 cut(s)	158, 487, 541, 688
NlaIV	GGNNCC	4 cut(s)	6, 269, 355, 403
NmuCI	GTSAC	1 cut(s)	450
PcsI	WCGNNNNNNNCGW	1 cut(s)	549
PdmI	GAANNNNTTC	2 cut(s)	257, 522
PfeI	GAWTC	2 cut(s)	147, 202
PkrI	GCNGC	2 cut(s)	76, 679
PleI	GAGTC	1 cut(s)	118
PmaCI	CACGTG	1 cut(s)	455
PmlI	CACGTG	1 cut(s)	455
PpsI	GAGTC	1 cut(s)	118
Ppu21I	YACGTR	1 cut(s)	455
Psp1406I	AACGTT	2 cut(s)	255, 318
Psp6I	CCWGG	1 cut(s)	507
PspCI	CACGTG	1 cut(s)	455
PspFI	CCCAGC	2 cut(s)	39, 615
PspGI	CCWGG	1 cut(s)	507
PspN4I	GGNNCC	4 cut(s)	6, 269, 355, 403
PspPI	GGNCC	1 cut(s)	381
PsuI	RGATCY	4 cut(s)	210, 332, 353, 428
RsaI	GTAC	2 cut(s)	421, 605
RsaNI	GTAC	2 cut(s)	420, 604
SalI	GTCGAC	1 cut(s)	106
SaqAI	TTAA	2 cut(s)	180, 219
SatI	GCNGC	2 cut(s)	75, 678
Sau96I	GGNCC	1 cut(s)	381
ScaI	AGTACT	1 cut(s)	421
SchI	GAGTC	1 cut(s)	118
ScrFI	CCNGG	2 cut(s)	79, 509
SfaNI	GCATC	1 cut(s)	75
SmlI	CTYRAG	2 cut(s)	278, 650
SmoI	CTYRAG	2 cut(s)	278, 650
SpeI	ACTAGT	2 cut(s)	359, 416
Sse9I	AATT	3 cut(s)	308, 346, 442
SspMI	CTAG	2 cut(s)	360, 417
StyD4I	CCNGG	2 cut(s)	77, 507
TaaI	ACNGT	2 cut(s)	531, 545
TaiI	ACGT	4 cut(s)	258, 321, 457, 555
TaqI	TCGA	4 cut(s)	107, 243, 339, 479
TasI	AATT	3 cut(s)	308, 346, 442
TatI	WGTACW	1 cut(s)	419
TfiI	GAWTC	2 cut(s)	147, 202
Tru1I	TTAA	2 cut(s)	180, 219
Tru9I	TTAA	2 cut(s)	180, 219
TscAI	CASTG	2 cut(s)	412, 534
TseFI	GTSAC	1 cut(s)	450
TseI	GCWGC	2 cut(s)	74, 677
Tsp45I	GTSAC	1 cut(s)	450
TspRI	CASTG	2 cut(s)	412, 534
XapI	RAATTY	2 cut(s)	308, 442
XmiI	GTMKAC	1 cut(s)	107
XmnI	GAANNNNTTC	2 cut(s)	257, 522
XspI	CTAG	2 cut(s)	360, 417
ZrmI	AGTACT	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.