Rmu_sc0000811.1_g000009

Plant protein of unknown function (DUF936)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000811.1
OG0031099
Physical Location & Seq
Forward (+)
43377 .. 43894
518 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 435 bp
atgaactccaccaccaaagtcaccggcgaccaccgctctgccctgctccaagtcatcgacatagtccccgccctcgccgactccgacgacctctggcccaaccaagacttctacctcggccagttcgtctacgacgaccgcttcgatttagactctccggtgcctcgcatcgccagaatcagccccatcgctggccgccaccccttcgtcggttcgccggagcctctggtggcggatttctctagggagaaaattgtctgttggggaagtgaaggactctgctgcaagaagaaaatggctacaattgttgccgaaatttcgaaggtttcggattcaatcgggatgtgccggagtaagagagagagagattcaatcgggatgtgccagagtatgagagagagaaagggttgggtggccagtgtaagaaacagatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF936

Protein Analysis

144

Amino Acids

16.13

Weight (kDa)

8.31

Isoelectric Point (pI)

53.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF936 PF06075 1 - 39 7e-12 Plant protein of unknown function (DUF936)
DUF936 PF06075 39 - 78 1.1e-09 Plant protein of unknown function (DUF936)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0031099)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000811.1_g000009 Rmu_sc0021871.1_g000011

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 160
AccBSI CCGCTC 1 cut(s) 36
AccI GTMKAC 1 cut(s) 129
AciI CCGC 5 cut(s) 34, 69, 139, 196, 233
AcoI YGGCCR 3 cut(s) 118, 193, 414
AcsI RAATTY 1 cut(s) 315
AfiI CCNNNNNNNGG 2 cut(s) 191, 209
AgsI TTSAA 2 cut(s) 336, 372
AjuI GAANNNNNNNTTGG 2 cut(s) 92, 124
AoxI GGCC 4 cut(s) 95, 118, 193, 414
ApeKI GCWGC 1 cut(s) 282
ApoI RAATTY 1 cut(s) 315
ArsI GACNNNNNNTTYG 2 cut(s) 125, 157
AspS9I GGNCC 1 cut(s) 96
AsuHPI GGTGA 1 cut(s) 13
AsuII TTCGAA 1 cut(s) 320
BalI TGGCCA 1 cut(s) 416
BanI GGYRCC 1 cut(s) 160
BbvI GCAGC 1 cut(s) 269
BccI CCATC 1 cut(s) 194
BfaI CTAG 1 cut(s) 243
BisI GCNGC 2 cut(s) 196, 283
BlsI GCNGC 2 cut(s) 197, 284
BmgT120I GGNCC 1 cut(s) 96
BmiI GGNNCC 2 cut(s) 162, 222
BmsI GCATC 1 cut(s) 177
Bpu14I TTCGAA 1 cut(s) 320
BsaJI CCNNGG 1 cut(s) 115
BsaWI WCCGGW 1 cut(s) 157
Bsc4I CCNNNNNNNGG 2 cut(s) 191, 209
Bse118I RCCGGY 1 cut(s) 23
Bse1I ACTGG 2 cut(s) 121, 417
BseDI CCNNGG 1 cut(s) 115
BseGI GGATG 2 cut(s) 348, 384
BseLI CCNNNNNNNGG 2 cut(s) 191, 209
BseNI ACTGG 2 cut(s) 121, 417
BseXI GCAGC 1 cut(s) 269
Bsh1285I CGRYCG 1 cut(s) 139
BshFI GGCC 4 cut(s) 97, 120, 195, 416
BshNI GGYRCC 1 cut(s) 160
BsiEI CGRYCG 1 cut(s) 139
BsiSI CCGG 4 cut(s) 24, 158, 218, 349
BslFI GGGAC 1 cut(s) 50
BslI CCNNNNNNNGG 2 cut(s) 191, 209
BsmFI GGGAC 1 cut(s) 50
BsnI GGCC 4 cut(s) 97, 120, 195, 416
Bsp119I TTCGAA 1 cut(s) 320
BspACI CCGC 5 cut(s) 34, 69, 139, 196, 233
BspANI GGCC 4 cut(s) 97, 120, 195, 416
BspLI GGNNCC 2 cut(s) 162, 222
BspT104I TTCGAA 1 cut(s) 320
BspT107I GGYRCC 1 cut(s) 160
BsrBI CCGCTC 1 cut(s) 36
BsrFI RCCGGY 1 cut(s) 23
BsrI ACTGG 2 cut(s) 121, 417
BssAI RCCGGY 1 cut(s) 23
BssECI CCNNGG 1 cut(s) 115
BstBI TTCGAA 1 cut(s) 320
BstC8I GCNNGC 1 cut(s) 193
BstF5I GGATG 2 cut(s) 348, 384
BstMCI CGRYCG 1 cut(s) 139
BstMWI GCNNNNNNNGC 1 cut(s) 33
BstV1I GCAGC 1 cut(s) 269
BsuRI GGCC 4 cut(s) 97, 120, 195, 416
BtgZI GCGATG 2 cut(s) 154, 172
BtsCI GGATG 2 cut(s) 348, 384
BtsIMutI CAGTG 1 cut(s) 424
Cac8I GCNNGC 1 cut(s) 193
Cfr10I RCCGGY 1 cut(s) 23
Cfr13I GGNCC 1 cut(s) 96
CviJI RGCY 7 cut(s) 97, 120, 183, 195, 223, 299, 416
CviKI_1 RGCY 7 cut(s) 97, 120, 183, 195, 223, 299, 416
EaeI YGGCCR 3 cut(s) 118, 193, 414
EciI GGCGGA 1 cut(s) 248
FaiI YATR 2 cut(s) 62, 392
FaqI GGGAC 1 cut(s) 50
FauI CCCGC 1 cut(s) 76
FblI GTMKAC 1 cut(s) 129
Fnu4HI GCNGC 2 cut(s) 196, 283
FokI GGATG 2 cut(s) 355, 391
Fsp4HI GCNGC 2 cut(s) 196, 283
FspBI CTAG 1 cut(s) 243
GluI GCNGC 2 cut(s) 196, 283
HaeIII GGCC 4 cut(s) 97, 120, 195, 416
HapII CCGG 4 cut(s) 24, 158, 218, 349
HinfI GANTC 6 cut(s) 80, 152, 177, 276, 332, 368
HpaII CCGG 4 cut(s) 24, 158, 218, 349
HphI GGTGA 1 cut(s) 13
Hpy166II GTNNAC 1 cut(s) 130
Hpy188I TCNGA 2 cut(s) 85, 331
Hpy188III TCNNGA 2 cut(s) 340, 376
Hpy8I GTNNAC 1 cut(s) 130
Hpy99I CGWCG 3 cut(s) 89, 137, 212
HpyAV CCTTC 3 cut(s) 214, 266, 316
HpyCH4V TGCA 1 cut(s) 285
HpyF10VI GCNNNNNNNGC 1 cut(s) 33
LmnI GCTCC 2 cut(s) 51, 220
Lsp1109I GCAGC 1 cut(s) 269
LweI GCATC 1 cut(s) 177
MaeI CTAG 1 cut(s) 243
MaeIII GTNAC 1 cut(s) 19
MbiI CCGCTC 1 cut(s) 36
MboII GAAGA 1 cut(s) 301
MfeI CAATTG 1 cut(s) 303
MlsI TGGCCA 1 cut(s) 416
MluCI AATT 3 cut(s) 252, 303, 315
MluNI TGGCCA 1 cut(s) 416
MlyI GAGTC 3 cut(s) 74, 146, 270
MmeI TCCRAC 1 cut(s) 108
MnlI CCTC 5 cut(s) 83, 101, 125, 174, 234
Mox20I TGGCCA 1 cut(s) 416
MscI TGGCCA 1 cut(s) 416
Msp20I TGGCCA 1 cut(s) 416
MspI CCGG 4 cut(s) 24, 158, 218, 349
MunI CAATTG 1 cut(s) 303
MwoI GCNNNNNNNGC 1 cut(s) 33
NlaIV GGNNCC 2 cut(s) 162, 222
NmeAIII GCCGAG 1 cut(s) 96
NmuCI GTSAC 1 cut(s) 19
NspV TTCGAA 1 cut(s) 320
PcsI WCGNNNNNNNCGW 4 cut(s) 81, 123, 132, 141
PfeI GAWTC 3 cut(s) 177, 332, 368
PflFI GACNNNGTC 1 cut(s) 62
PkrI GCNGC 2 cut(s) 197, 284
PleI GAGTC 3 cut(s) 74, 146, 270
PpsI GAGTC 3 cut(s) 74, 146, 270
PspN4I GGNNCC 2 cut(s) 162, 222
PspPI GGNCC 1 cut(s) 96
PsyI GACNNNGTC 1 cut(s) 62
SatI GCNGC 2 cut(s) 196, 283
Sau96I GGNCC 1 cut(s) 96
SchI GAGTC 3 cut(s) 74, 146, 270
SetI ASST 3 cut(s) 93, 117, 327
SfaNI GCATC 1 cut(s) 177
SfuI TTCGAA 1 cut(s) 320
SgrAI CRCCGGYG 1 cut(s) 23
Sse9I AATT 3 cut(s) 252, 303, 315
SsiI CCGC 5 cut(s) 34, 69, 139, 196, 233
SspMI CTAG 1 cut(s) 243
TaqI TCGA 3 cut(s) 57, 144, 320
TasI AATT 3 cut(s) 252, 303, 315
TauI GCSGC 1 cut(s) 198
TfiI GAWTC 3 cut(s) 177, 332, 368
TscAI CASTG 1 cut(s) 424
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 1 cut(s) 282
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 424
Tth111I GACNNNGTC 1 cut(s) 62
XapI RAATTY 1 cut(s) 315
XmiI GTMKAC 1 cut(s) 129
XspI CTAG 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.