Rmu_sc0021871.1_g000011

Plant protein of unknown function (DUF936)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021871.1
OG0031099
Physical Location & Seq
Forward (+)
46318 .. 46983
666 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021871.1_g000011.1.cds

Sequence Viewer

Length: 582 bp
atgtcctccacattccaaatcccaatcctctctctctctgattctctcacccccaatggcttcacccactcccggctcttccactccatgaactccgccaccaaagtcaccggcgaccaccgttctgccctgctccaagtcatcggcatagtccccgccctcgccgactccgacgaccaccgctctgccctgctccaagtcatcgacatagtccccgccctcgccgactcagacgacctctggcccaaccaagacttctacctcggccagttcgtctacgacgaccgcttcgatttagactctccggtgccgcgcatcgccagaatcaaccccatagctggccgccaccccttcgtcggttcgccggagcctctggtggcggatttctccagggagaaaattgtctgttggggaagtgaaggactctgctgcaagaagaaaatggctacaattgttgccggaatttcgaaggtttcggattcaatcgagatgtgccggagtaagagagagagagattcaatcgggatgtgccagagtatgagagagagaaagggttgggtggccagtgtaagaaacagatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF936

Protein Analysis

193

Amino Acids

21.41

Weight (kDa)

6.95

Isoelectric Point (pI)

51.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031099)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000811.1_g000009 Rmu_sc0021871.1_g000011

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 307
AccBSI CCGCTC 1 cut(s) 183
AccI GTMKAC 1 cut(s) 276
AccII CGCG 1 cut(s) 313
AciI CCGC 8 cut(s) 96, 156, 181, 216, 286, 311, 343, 380
AcoI YGGCCR 3 cut(s) 265, 340, 561
AcsI RAATTY 1 cut(s) 462
AfiI CCNNNNNNNGG 3 cut(s) 72, 338, 356
AgsI TTSAA 2 cut(s) 483, 519
AjnI CCWGG 1 cut(s) 389
AjuI GAANNNNNNNTTGG 2 cut(s) 239, 271
AluBI AGCT 1 cut(s) 338
AluI AGCT 1 cut(s) 338
AoxI GGCC 4 cut(s) 242, 265, 340, 561
ApeKI GCWGC 1 cut(s) 429
ApoI RAATTY 1 cut(s) 462
ArsI GACNNNNNNTTYG 2 cut(s) 272, 304
AspLEI GCGC 1 cut(s) 315
AspS9I GGNCC 1 cut(s) 243
AsuC2I CCSGG 1 cut(s) 73
AsuHPI GGTGA 3 cut(s) 40, 55, 100
AsuII TTCGAA 1 cut(s) 467
BalI TGGCCA 1 cut(s) 563
BanI GGYRCC 1 cut(s) 307
BbvI GCAGC 1 cut(s) 416
BciT130I CCWGG 1 cut(s) 391
BcnI CCSGG 1 cut(s) 73
BisI GCNGC 3 cut(s) 311, 343, 430
BlsI GCNGC 3 cut(s) 312, 344, 431
Bme1390I CCNGG 2 cut(s) 73, 391
BmgT120I GGNCC 1 cut(s) 243
BmiI GGNNCC 2 cut(s) 309, 369
BmrFI CCNGG 2 cut(s) 73, 391
BmsI GCATC 1 cut(s) 324
BpmI CTGGAG 1 cut(s) 373
Bpu14I TTCGAA 1 cut(s) 467
BpuMI CCSGG 1 cut(s) 73
BsaJI CCNNGG 2 cut(s) 262, 390
BsaWI WCCGGW 1 cut(s) 304
Bsc4I CCNNNNNNNGG 3 cut(s) 72, 338, 356
Bse118I RCCGGY 1 cut(s) 110
Bse1I ACTGG 2 cut(s) 268, 564
BseBI CCWGG 1 cut(s) 391
BseDI CCNNGG 2 cut(s) 262, 390
BseGI GGATG 1 cut(s) 531
BseLI CCNNNNNNNGG 3 cut(s) 72, 338, 356
BseMII CTCAG 1 cut(s) 243
BseNI ACTGG 2 cut(s) 268, 564
BseXI GCAGC 1 cut(s) 416
Bsh1236I CGCG 1 cut(s) 313
Bsh1285I CGRYCG 1 cut(s) 286
BshFI GGCC 4 cut(s) 244, 267, 342, 563
BshNI GGYRCC 1 cut(s) 307
BsiEI CGRYCG 1 cut(s) 286
BsiSI CCGG 6 cut(s) 73, 111, 305, 365, 459, 496
BslFI GGGAC 2 cut(s) 137, 197
BslI CCNNNNNNNGG 3 cut(s) 72, 338, 356
BsmFI GGGAC 2 cut(s) 137, 197
BsnI GGCC 4 cut(s) 244, 267, 342, 563
Bsp119I TTCGAA 1 cut(s) 467
BspACI CCGC 8 cut(s) 96, 156, 181, 216, 286, 311, 343, 380
BspANI GGCC 4 cut(s) 244, 267, 342, 563
BspCNI CTCAG 1 cut(s) 242
BspFNI CGCG 1 cut(s) 313
BspLI GGNNCC 2 cut(s) 309, 369
BspQI GCTCTTC 1 cut(s) 83
BspT104I TTCGAA 1 cut(s) 467
BspT107I GGYRCC 1 cut(s) 307
BsrBI CCGCTC 1 cut(s) 183
BsrFI RCCGGY 1 cut(s) 110
BsrI ACTGG 2 cut(s) 268, 564
BssAI RCCGGY 1 cut(s) 110
BssECI CCNNGG 2 cut(s) 262, 390
Bst2UI CCWGG 1 cut(s) 391
Bst4CI ACNGT 1 cut(s) 122
Bst6I CTCTTC 1 cut(s) 83
BstBI TTCGAA 1 cut(s) 467
BstC8I GCNNGC 1 cut(s) 340
BstDEI CTNAG 1 cut(s) 229
BstF5I GGATG 1 cut(s) 531
BstFNI CGCG 1 cut(s) 313
BstHHI GCGC 1 cut(s) 315
BstMCI CGRYCG 1 cut(s) 286
BstNI CCWGG 1 cut(s) 391
BstSCI CCNGG 2 cut(s) 71, 389
BstUI CGCG 1 cut(s) 313
BstV1I GCAGC 1 cut(s) 416
BsuRI GGCC 4 cut(s) 244, 267, 342, 563
BtgZI GCGATG 1 cut(s) 301
BtsCI GGATG 1 cut(s) 531
BtsIMutI CAGTG 1 cut(s) 571
Cac8I GCNNGC 1 cut(s) 340
CfoI GCGC 1 cut(s) 315
Cfr10I RCCGGY 1 cut(s) 110
Cfr13I GGNCC 1 cut(s) 243
CviAII CATG 1 cut(s) 88
CviJI RGCY 9 cut(s) 60, 76, 244, 267, 338, 342, 370, 446, 563
CviKI_1 RGCY 9 cut(s) 60, 76, 244, 267, 338, 342, 370, 446, 563
DdeI CTNAG 1 cut(s) 229
EaeI YGGCCR 3 cut(s) 265, 340, 561
Eam1104I CTCTTC 1 cut(s) 83
EarI CTCTTC 1 cut(s) 83
EciI GGCGGA 2 cut(s) 85, 395
EcoRII CCWGG 1 cut(s) 389
FaeI CATG 1 cut(s) 91
FaiI YATR 5 cut(s) 89, 149, 209, 335, 539
FaqI GGGAC 2 cut(s) 137, 197
FatI CATG 1 cut(s) 87
FauI CCCGC 2 cut(s) 163, 223
FblI GTMKAC 1 cut(s) 276
Fnu4HI GCNGC 3 cut(s) 311, 343, 430
FokI GGATG 1 cut(s) 538
Fsp4HI GCNGC 3 cut(s) 311, 343, 430
GlaI GCGC 1 cut(s) 314
GluI GCNGC 3 cut(s) 311, 343, 430
GsuI CTGGAG 1 cut(s) 373
HaeIII GGCC 4 cut(s) 244, 267, 342, 563
HapII CCGG 6 cut(s) 73, 111, 305, 365, 459, 496
HhaI GCGC 1 cut(s) 315
Hin1II CATG 1 cut(s) 91
Hin6I GCGC 1 cut(s) 313
HinP1I GCGC 1 cut(s) 313
HinfI GANTC 8 cut(s) 41, 167, 227, 299, 324, 423, 479, 515
HpaII CCGG 6 cut(s) 73, 111, 305, 365, 459, 496
HphI GGTGA 3 cut(s) 40, 55, 100
Hpy166II GTNNAC 1 cut(s) 277
Hpy188I TCNGA 4 cut(s) 40, 172, 232, 478
Hpy188III TCNNGA 2 cut(s) 487, 523
Hpy8I GTNNAC 1 cut(s) 277
Hpy99I CGWCG 3 cut(s) 176, 284, 359
HpyAV CCTTC 3 cut(s) 361, 413, 463
HpyCH4III ACNGT 1 cut(s) 122
HpyCH4V TGCA 1 cut(s) 432
HpyF3I CTNAG 1 cut(s) 229
Hsp92II CATG 1 cut(s) 91
HspAI GCGC 1 cut(s) 313
LguI GCTCTTC 1 cut(s) 83
LmnI GCTCC 3 cut(s) 138, 198, 367
Lsp1109I GCAGC 1 cut(s) 416
LweI GCATC 1 cut(s) 324
MaeIII GTNAC 1 cut(s) 106
MbiI CCGCTC 1 cut(s) 183
MboII GAAGA 2 cut(s) 70, 448
MfeI CAATTG 1 cut(s) 450
MlsI TGGCCA 1 cut(s) 563
MluCI AATT 3 cut(s) 399, 450, 462
MluNI TGGCCA 1 cut(s) 563
MlyI GAGTC 4 cut(s) 161, 221, 293, 417
MmeI TCCRAC 1 cut(s) 195
MnlI CCTC 7 cut(s) 16, 38, 170, 230, 248, 272, 381
Mox20I TGGCCA 1 cut(s) 563
MscI TGGCCA 1 cut(s) 563
Msp20I TGGCCA 1 cut(s) 563
MspI CCGG 6 cut(s) 73, 111, 305, 365, 459, 496
MspR9I CCNGG 2 cut(s) 73, 391
MunI CAATTG 1 cut(s) 450
MvaI CCWGG 1 cut(s) 391
MvnI CGCG 1 cut(s) 313
NciI CCSGG 1 cut(s) 73
NlaIII CATG 1 cut(s) 91
NlaIV GGNNCC 2 cut(s) 309, 369
NmeAIII GCCGAG 1 cut(s) 243
NmuCI GTSAC 1 cut(s) 106
NspV TTCGAA 1 cut(s) 467
PciSI GCTCTTC 1 cut(s) 83
PcsI WCGNNNNNNNCGW 4 cut(s) 168, 270, 279, 288
PfeI GAWTC 4 cut(s) 41, 324, 479, 515
PflFI GACNNNGTC 1 cut(s) 209
PkrI GCNGC 3 cut(s) 312, 344, 431
PleI GAGTC 4 cut(s) 161, 221, 293, 417
PpsI GAGTC 4 cut(s) 161, 221, 293, 417
Psp6I CCWGG 1 cut(s) 389
PspGI CCWGG 1 cut(s) 389
PspN4I GGNNCC 2 cut(s) 309, 369
PspPI GGNCC 1 cut(s) 243
PsyI GACNNNGTC 1 cut(s) 209
SapI GCTCTTC 1 cut(s) 83
SatI GCNGC 3 cut(s) 311, 343, 430
Sau96I GGNCC 1 cut(s) 243
SchI GAGTC 4 cut(s) 161, 221, 293, 417
ScrFI CCNGG 2 cut(s) 73, 391
SetI ASST 4 cut(s) 240, 264, 340, 474
SfaNI GCATC 1 cut(s) 324
SfuI TTCGAA 1 cut(s) 467
SgrAI CRCCGGYG 1 cut(s) 110
Sse9I AATT 3 cut(s) 399, 450, 462
SsiI CCGC 8 cut(s) 96, 156, 181, 216, 286, 311, 343, 380
StyD4I CCNGG 2 cut(s) 71, 389
TaaI ACNGT 1 cut(s) 122
TaqI TCGA 4 cut(s) 204, 291, 467, 486
TasI AATT 3 cut(s) 399, 450, 462
TauI GCSGC 2 cut(s) 313, 345
TfiI GAWTC 4 cut(s) 41, 324, 479, 515
TscAI CASTG 1 cut(s) 571
TseFI GTSAC 1 cut(s) 106
TseI GCWGC 1 cut(s) 429
Tsp45I GTSAC 1 cut(s) 106
TspDTI ATGAA 1 cut(s) 104
TspRI CASTG 1 cut(s) 571
Tth111I GACNNNGTC 1 cut(s) 209
XapI RAATTY 1 cut(s) 462
XmiI GTMKAC 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.