Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000815.1

Orthogroup ID

OG0030886

Physical Location & Seq

Genomic Coordinates Forward (+)

24505 .. 24876

Gene Structure 372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000815.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

atgtatggaggtgtctgctgtgtggacgggtgggctgcagggtgcatattttccttcatgctcagtggtaaagaattgttcgaaaacaaattcatgatagagagacgtccacagtttaagatgcttagaaaaatctacaggacaatgggtgtttcgacgaaacgctattgggttgagcgaaattgtagtttcagacagctgatgtgtgagcaatcagagcctattaggctgcgattgcggttctccatattcactgatgcagacggaatggatttgatggaaagaacgcttctcctggacccagcaaagtggatatcgataagtgaggcattgaagcacccatatttcaaagatgtactcccagtggcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005488 GO:0005524 GO:0006355 GO:0006357 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007346 GO:0008144 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019219 GO:0019222 GO:0019538 GO:0023052 GO:0030554 GO:0031323 GO:0031326 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0097367 GO:0097472 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

123

Amino Acids

14.49

Weight (kDa)

9.08

Isoelectric Point (pI)

40.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030886)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000029804
rosa_multiflora	Rmu_sc0000815.1_g000006

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	109
AciI	CCGC	1 cut(s)	238
AcsI	RAATTY	1 cut(s)	89
AcyI	GRCGYC	1 cut(s)	106
AfaI	GTAC	1 cut(s)	357
AgsI	TTSAA	2 cut(s)	334, 349
AjnI	CCWGG	1 cut(s)	294
AluBI	AGCT	1 cut(s)	199
AluI	AGCT	1 cut(s)	199
Alw26I	GTCTC	1 cut(s)	97
ApeKI	GCWGC	2 cut(s)	35, 229
ApoI	RAATTY	1 cut(s)	89
AspS9I	GGNCC	1 cut(s)	298
AsuII	TTCGAA	1 cut(s)	81
AvaII	GGWCC	1 cut(s)	298
BbvI	GCAGC	2 cut(s)	22, 216
BccI	CCATC	1 cut(s)	271
BciT130I	CCWGG	1 cut(s)	296
BcoDI	GTCTC	1 cut(s)	97
BfmI	CTRYAG	2 cut(s)	36, 136
BglI	GCCNNNNNGGC	1 cut(s)	226
BisI	GCNGC	2 cut(s)	36, 230
BlsI	GCNGC	2 cut(s)	37, 231
Bme1390I	CCNGG	1 cut(s)	296
Bme18I	GGWCC	1 cut(s)	298
BmgT120I	GGNCC	1 cut(s)	298
BmiI	GGNNCC	1 cut(s)	300
BmrFI	CCNGG	1 cut(s)	296
BmrI	ACTGGG	1 cut(s)	356
BmsI	GCATC	2 cut(s)	111, 247
BmuI	ACTGGG	1 cut(s)	356
Bpu14I	TTCGAA	1 cut(s)	81
Bsa29I	ATCGAT	1 cut(s)	317
BsaHI	GRCGYC	1 cut(s)	106
Bse1I	ACTGG	1 cut(s)	362
BseBI	CCWGG	1 cut(s)	296
BseCI	ATCGAT	1 cut(s)	317
BseMII	CTCAG	1 cut(s)	76
BseNI	ACTGG	1 cut(s)	362
BseXI	GCAGC	2 cut(s)	22, 216
BseYI	CCCAGC	1 cut(s)	301
BshVI	ATCGAT	1 cut(s)	317
BsmAI	GTCTC	1 cut(s)	97
BsmBI	CGTCTC	1 cut(s)	97
Bsp119I	TTCGAA	1 cut(s)	81
BspACI	CCGC	1 cut(s)	238
BspCNI	CTCAG	1 cut(s)	75
BspDI	ATCGAT	1 cut(s)	317
BspHI	TCATGA	1 cut(s)	93
BspLI	GGNNCC	1 cut(s)	300
BspMAI	CTGCAG	1 cut(s)	40
BspT104I	TTCGAA	1 cut(s)	81
BsrI	ACTGG	1 cut(s)	362
BssNI	GRCGYC	1 cut(s)	106
Bst2UI	CCWGG	1 cut(s)	296
Bst4CI	ACNGT	1 cut(s)	114
BstACI	GRCGYC	1 cut(s)	106
BstBI	TTCGAA	1 cut(s)	81
BstDEI	CTNAG	2 cut(s)	62, 125
BstMAI	GTCTC	1 cut(s)	97
BstMWI	GCNNNNNNNGC	3 cut(s)	217, 226, 235
BstNI	CCWGG	1 cut(s)	296
BstSCI	CCNGG	1 cut(s)	294
BstSFI	CTRYAG	2 cut(s)	36, 136
BstV1I	GCAGC	2 cut(s)	22, 216
BstXI	CCANNNNNNTGG	1 cut(s)	309
Bsu15I	ATCGAT	1 cut(s)	317
BsuTUI	ATCGAT	1 cut(s)	317
BtsIMutI	CAGTG	3 cut(s)	70, 252, 369
CciI	TCATGA	1 cut(s)	93
Cfr13I	GGNCC	1 cut(s)	298
ClaI	ATCGAT	1 cut(s)	317
Csp6I	GTAC	1 cut(s)	356
CviAII	CATG	2 cut(s)	58, 94
CviJI	RGCY	4 cut(s)	35, 199, 220, 229
CviKI_1	RGCY	4 cut(s)	35, 199, 220, 229
CviQI	GTAC	1 cut(s)	356
DdeI	CTNAG	2 cut(s)	62, 125
Eco32I	GATATC	1 cut(s)	315
Eco47I	GGWCC	1 cut(s)	298
EcoRII	CCWGG	1 cut(s)	294
EcoRV	GATATC	1 cut(s)	315
Esp3I	CGTCTC	1 cut(s)	97
FaeI	CATG	2 cut(s)	61, 97
FaiI	YATR	7 cut(s)	6, 47, 59, 95, 248, 343, 370
FatI	CATG	2 cut(s)	57, 93
Fnu4HI	GCNGC	2 cut(s)	36, 230
Fsp4HI	GCNGC	2 cut(s)	36, 230
GluI	GCNGC	2 cut(s)	36, 230
GsaI	CCCAGC	1 cut(s)	305
Hin1I	GRCGYC	1 cut(s)	106
Hin1II	CATG	2 cut(s)	61, 97
Hpy166II	GTNNAC	2 cut(s)	25, 110
Hpy188I	TCNGA	2 cut(s)	194, 217
Hpy188III	TCNNGA	1 cut(s)	94
Hpy8I	GTNNAC	2 cut(s)	25, 110
Hpy99I	CGWCG	1 cut(s)	160
HpyAV	CCTTC	1 cut(s)	64
HpyCH4III	ACNGT	1 cut(s)	114
HpyCH4IV	ACGT	1 cut(s)	106
HpyCH4V	TGCA	3 cut(s)	38, 45, 260
HpyF10VI	GCNNNNNNNGC	3 cut(s)	217, 226, 235
HpyF3I	CTNAG	2 cut(s)	62, 125
HpySE526I	ACGT	1 cut(s)	106
Hsp92I	GRCGYC	1 cut(s)	106
Hsp92II	CATG	2 cut(s)	61, 97
LpnPI	CCDG	5 cut(s)	24, 124, 281, 308, 315
Lsp1109I	GCAGC	2 cut(s)	22, 216
LweI	GCATC	2 cut(s)	111, 247
MaeII	ACGT	1 cut(s)	106
MluCI	AATT	3 cut(s)	74, 89, 181
MnlI	CCTC	1 cut(s)	319
MseI	TTAA	1 cut(s)	117
MspA1I	CMGCKG	1 cut(s)	199
MspR9I	CCNGG	1 cut(s)	296
MvaI	CCWGG	1 cut(s)	296
MwoI	GCNNNNNNNGC	3 cut(s)	217, 226, 235
NlaIII	CATG	2 cut(s)	61, 97
NlaIV	GGNNCC	1 cut(s)	300
NspV	TTCGAA	1 cut(s)	81
PagI	TCATGA	1 cut(s)	93
PfoI	TCCNGGA	1 cut(s)	294
PkrI	GCNGC	2 cut(s)	37, 231
Psp6I	CCWGG	1 cut(s)	294
PspFI	CCCAGC	1 cut(s)	301
PspGI	CCWGG	1 cut(s)	294
PspN4I	GGNNCC	1 cut(s)	300
PspPI	GGNCC	1 cut(s)	298
PstI	CTGCAG	1 cut(s)	40
PvuII	CAGCTG	1 cut(s)	199
RsaI	GTAC	1 cut(s)	357
RsaNI	GTAC	1 cut(s)	356
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	2 cut(s)	36, 230
Sau96I	GGNCC	1 cut(s)	298
ScrFI	CCNGG	1 cut(s)	296
SetI	ASST	3 cut(s)	13, 109, 201
SfaNI	GCATC	2 cut(s)	111, 247
SfcI	CTRYAG	2 cut(s)	36, 136
SfuI	TTCGAA	1 cut(s)	81
SgeI	CNNG	8 cut(s)	40, 51, 70, 106, 151, 307, 308, 314
SinI	GGWCC	1 cut(s)	298
Sse9I	AATT	3 cut(s)	74, 89, 181
SsiI	CCGC	1 cut(s)	238
StyD4I	CCNGG	1 cut(s)	294
TaaI	ACNGT	1 cut(s)	114
TaiI	ACGT	1 cut(s)	109
TaqI	TCGA	3 cut(s)	81, 155, 317
TasI	AATT	3 cut(s)	74, 89, 181
TatI	WGTACW	1 cut(s)	355
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TscAI	CASTG	3 cut(s)	70, 259, 369
TseI	GCWGC	2 cut(s)	35, 229
TspDTI	ATGAA	2 cut(s)	46, 82
TspGWI	ACGGA	1 cut(s)	279
TspRI	CASTG	3 cut(s)	70, 259, 369
VpaK11BI	GGWCC	1 cut(s)	298
XapI	RAATTY	1 cut(s)	89
ZraI	GACGTC	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.