Rmu_sc0000824.1_g000005

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000824.1
Physical Location & Seq
Forward (+)
10876 .. 11256
381 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 381 bp
ctgaatgaaaaagattccagatggttgtgggtctcactcgaagactgctttggcaatgtccgtgactccctgtttcctgacttagaagtgagatggcataatctccgcttctatgatttcaagacagttcttgattacaactcggaagcacttcgcattaaatccttaatggaattctatggtaatgagattacaaatgcgatgttgattgagatgactctctctaccttccccatctctgctttcgtggttgctaagaactatcgaatcgctgttacaacaaaacagattacaaggtttcatgagcacattagagccatgaatgtcactaaaatgcatgacaacatccttgtgaaaaactataatttgagacccgtgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

126

Amino Acids

15.02

Weight (kDa)

8.07

Isoelectric Point (pI)

63.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0031100)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000824.1_g000005 Rmu_sc0026749.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 106
AcsI RAATTY 1 cut(s) 173
AgsI TTSAA 1 cut(s) 121
AjuI GAANNNNNNNTTGG 2 cut(s) 33, 65
Alw21I GWGCWC 1 cut(s) 309
Alw26I GTCTC 2 cut(s) 37, 364
ApoI RAATTY 1 cut(s) 173
Asp700I GAANNNNTTC 1 cut(s) 150
BbsI GAAGAC 1 cut(s) 48
Bbv12I GWGCWC 1 cut(s) 309
BccI CCATC 3 cut(s) 15, 87, 242
BcoDI GTCTC 2 cut(s) 37, 364
BpiI GAAGAC 1 cut(s) 48
BsaI GGTCTC 2 cut(s) 37, 364
Bse3DI GCAATG 1 cut(s) 61
BseGI GGATG 1 cut(s) 345
BseMI GCAATG 1 cut(s) 61
BsiHKAI GWGCWC 1 cut(s) 309
BsmAI GTCTC 2 cut(s) 37, 364
Bso31I GGTCTC 2 cut(s) 37, 364
Bsp1286I GDGCHC 1 cut(s) 309
BspACI CCGC 1 cut(s) 106
BspHI TCATGA 1 cut(s) 301
BspTNI GGTCTC 2 cut(s) 37, 364
BsrDI GCAATG 1 cut(s) 61
Bst4CI ACNGT 1 cut(s) 127
BstDEI CTNAG 2 cut(s) 82, 255
BstF5I GGATG 1 cut(s) 345
BstMAI GTCTC 2 cut(s) 37, 364
BstV2I GAAGAC 1 cut(s) 48
BtgZI GCGATG 1 cut(s) 215
BtsCI GGATG 1 cut(s) 345
CciI TCATGA 1 cut(s) 301
CviAII CATG 3 cut(s) 302, 319, 338
CviJI RGCY 1 cut(s) 317
CviKI_1 RGCY 1 cut(s) 317
DdeI CTNAG 2 cut(s) 82, 255
Eco31I GGTCTC 2 cut(s) 37, 364
EcoRI GAATTC 1 cut(s) 173
EcoT22I ATGCAT 1 cut(s) 339
FaeI CATG 3 cut(s) 305, 322, 341
FaiI YATR 7 cut(s) 99, 114, 180, 303, 320, 339, 363
FatI CATG 3 cut(s) 301, 318, 337
FokI GGATG 1 cut(s) 332
Hin1II CATG 3 cut(s) 305, 322, 341
HinfI GANTC 4 cut(s) 14, 65, 217, 267
Hpy188I TCNGA 1 cut(s) 145
Hpy188III TCNNGA 5 cut(s) 18, 77, 121, 131, 302
HpyAV CCTTC 1 cut(s) 238
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4V TGCA 1 cut(s) 337
HpyF3I CTNAG 2 cut(s) 82, 255
Hsp92II CATG 3 cut(s) 305, 322, 341
LpnPI CCDG 3 cut(s) 31, 83, 90
MaeIII GTNAC 3 cut(s) 62, 274, 325
MboII GAAGA 1 cut(s) 53
MhlI GDGCHC 1 cut(s) 309
MluCI AATT 2 cut(s) 173, 364
MlyI GAGTC 2 cut(s) 59, 211
Mph1103I ATGCAT 1 cut(s) 339
MroXI GAANNNNTTC 1 cut(s) 150
MseI TTAA 2 cut(s) 159, 167
MslI CAYNNNNRTG 2 cut(s) 332, 350
NlaIII CATG 3 cut(s) 305, 322, 341
NmuCI GTSAC 2 cut(s) 62, 325
NsiI ATGCAT 1 cut(s) 339
PagI TCATGA 1 cut(s) 301
PdmI GAANNNNTTC 1 cut(s) 150
PfeI GAWTC 2 cut(s) 14, 267
PleI GAGTC 2 cut(s) 59, 211
PpsI GAGTC 2 cut(s) 59, 211
RseI CAYNNNNRTG 2 cut(s) 332, 350
SaqAI TTAA 2 cut(s) 159, 167
SchI GAGTC 2 cut(s) 59, 211
SduI GDGCHC 1 cut(s) 309
SetI ASST 2 cut(s) 230, 299
SmiMI CAYNNNNRTG 2 cut(s) 332, 350
Sse9I AATT 2 cut(s) 173, 364
SsiI CCGC 1 cut(s) 106
TaaI ACNGT 1 cut(s) 127
TaqI TCGA 2 cut(s) 39, 265
TasI AATT 2 cut(s) 173, 364
TfiI GAWTC 2 cut(s) 14, 267
Tru1I TTAA 2 cut(s) 159, 167
Tru9I TTAA 2 cut(s) 159, 167
TseFI GTSAC 2 cut(s) 62, 325
Tsp45I GTSAC 2 cut(s) 62, 325
TspDTI ATGAA 3 cut(s) 21, 290, 335
TspGWI ACGGA 1 cut(s) 50
XapI RAATTY 1 cut(s) 173
XmnI GAANNNNTTC 1 cut(s) 150
Zsp2I ATGCAT 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.