Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000830.1

Orthogroup ID

OG0031101

Physical Location & Seq

Genomic Coordinates Forward (+)

210469 .. 213155

Gene Structure 2687 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

atgggggacccaagcccaagcaacagtctaggaaagaggaagaccacacactgccagccagacctggcccaactccgtcggaaccagcagtgcgccgcacctacaccctcgccagaaaccagtcaacgaactcccaactccaacgcgcataggggaatagacatcccagatcagaaacaatccatgaagaaacgtatgcgtcgcaaggaggagctttgtggagacacgcaaacccggatcgggatcgtgtggccgaggtattgctggaagctagaccaagatatggcaggttggttagctgccttagctggtcgatatggttacaaggagcagcagatgcttgcggcagagttgcaggggcagtgcggagcgggtgcaagggcgcggggctgtagggcacctagctgggcgcggggtctcactcactcagtcaccgcttcttcacatgctgccgcctctctgagagctcagagctccgccgcagcagatccctacctcccctctcccaatggggtcacttgctctcatcaccgcccctctcccctctctcagatcccgaactgccttcccgaaatctctatcactaaaaccgagtacgagactccaaacctaagcccgacccgggccgctcagaaccgccgctcttggcttcaacaaaaccctaagccctgtcattgccctccccaaactcgcaactccgcctgcgagttcgctcccctccgaagccgctgcttgactgttaaggtcgccgcttccagctttggttccattactccggcgaagcagccatggcaaggcatggcgatgaagcctctgatcgcgtcgatcgcgacgggggtgatcctctggttcgtgccgactcctgttggcgtcaccaaaaacgcgtggcagcttctggcgattttcctcgccaccatcgtcggaatcatcacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006536 GO:0006541 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009064 GO:0009507 GO:0009526 GO:0009534 GO:0009536 GO:0009579 GO:0009605 GO:0009607 GO:0009624 GO:0009941 GO:0009987 GO:0015075 GO:0015131 GO:0015139 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015729 GO:0015740 GO:0015742 GO:0015743 GO:0015849 GO:0016020 GO:0019676 GO:0019740 GO:0019752 GO:0022857 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051181 GO:0051184 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071423 GO:0071702 GO:0071704 GO:0098656 GO:1901564 GO:1901605 GO:1902356 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_sulph_symp

Protein Analysis

311

Amino Acids

33.9

Weight (kDa)

9.88

Isoelectric Point (pI)

55.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_sulph_symp	PF00939	271 - 311	3.2e-06	Sodium:sulfate symporter transmembrane region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031101)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000830.1_g000052
rosa_samantha	Rh4CG405100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	278
AccB1I	GGYRCC	1 cut(s)	397
AccB7I	CCANNNNNTGG	1 cut(s)	283
AccBSI	CCGCTC	3 cut(s)	371, 629, 642
AccII	CGCG	6 cut(s)	146, 385, 412, 821, 830, 884
AclWI	GGATC	5 cut(s)	245, 251, 482, 547, 835
AcoI	YGGCCR	1 cut(s)	251
AcyI	GRCGYC	1 cut(s)	870
AfaI	GTAC	1 cut(s)	596
AfiI	CCNNNNNNNGG	4 cut(s)	240, 283, 622, 794
AflIII	ACRYGT	1 cut(s)	882
AgsI	TTSAA	1 cut(s)	653
AjnI	CCWGG	1 cut(s)	63
AluBI	AGCT	9 cut(s)	214, 271, 299, 308, 405, 467, 474, 759, 892
AluI	AGCT	9 cut(s)	214, 271, 299, 308, 405, 467, 474, 759, 892
Alw21I	GWGCWC	2 cut(s)	469, 476
Alw26I	GTCTC	3 cut(s)	216, 422, 593
AlwI	GGATC	5 cut(s)	245, 251, 482, 547, 835
AlwNI	CAGNNNCTG	1 cut(s)	895
Ama87I	CYCGRG	1 cut(s)	621
AoxI	GGCC	3 cut(s)	66, 251, 624
ApeKI	GCWGC	7 cut(s)	299, 331, 449, 482, 729, 784, 889
AspLEI	GCGC	4 cut(s)	95, 148, 385, 412
AspS9I	GGNCC	3 cut(s)	7, 67, 624
AsuC2I	CCSGG	3 cut(s)	235, 622, 623
AsuHPI	GGTGA	4 cut(s)	424, 521, 850, 865
AvaI	CYCGRG	1 cut(s)	621
AvaII	GGWCC	1 cut(s)	7
BaeGI	GKGCMC	1 cut(s)	400
BanI	GGYRCC	1 cut(s)	397
BanII	GRGCYC	2 cut(s)	469, 476
BbsI	GAAGAC	1 cut(s)	47
Bbv12I	GWGCWC	2 cut(s)	469, 476
BbvI	GCAGC	7 cut(s)	286, 343, 436, 494, 716, 796, 901
BccI	CCATC	1 cut(s)	923
BcgI	CGANNNNNNTGC	2 cut(s)	711, 745
BciT130I	CCWGG	1 cut(s)	65
BcnI	CCSGG	3 cut(s)	235, 622, 623
BcoDI	GTCTC	3 cut(s)	216, 422, 593
BfaI	CTAG	3 cut(s)	29, 272, 402
BfmI	CTRYAG	1 cut(s)	391
BfuAI	ACCTGC	1 cut(s)	278
Bme1390I	CCNGG	4 cut(s)	65, 235, 622, 623
Bme18I	GGWCC	1 cut(s)	7
BmeT110I	CYCGRG	1 cut(s)	621
BmgT120I	GGNCC	3 cut(s)	7, 67, 624
BmiI	GGNNCC	5 cut(s)	8, 9, 83, 399, 766
BmrFI	CCNGG	4 cut(s)	65, 235, 622, 623
BmsI	GCATC	1 cut(s)	327
BpiI	GAAGAC	1 cut(s)	47
Bpu10I	CCTNAGC	3 cut(s)	304, 611, 663
BpuMI	CCSGG	3 cut(s)	235, 622, 623
BsaBI	GATNNNNATC	1 cut(s)	242
BsaHI	GRCGYC	1 cut(s)	870
BsaI	GGTCTC	1 cut(s)	422
BsaJI	CCNNGG	3 cut(s)	254, 621, 788
Bsc4I	CCNNNNNNNGG	4 cut(s)	240, 283, 622, 794
Bse1I	ACTGG	1 cut(s)	120
Bse3DI	GCAATG	1 cut(s)	673
Bse8I	GATNNNNATC	1 cut(s)	242
BseBI	CCWGG	1 cut(s)	65
BseDI	CCNNGG	3 cut(s)	254, 621, 788
BseGI	GGATG	1 cut(s)	162
BseJI	GATNNNNATC	1 cut(s)	242
BseLI	CCNNNNNNNGG	4 cut(s)	240, 283, 622, 794
BseMI	GCAATG	1 cut(s)	673
BseMII	CTCAG	5 cut(s)	441, 452, 482, 563, 644
BseNI	ACTGG	1 cut(s)	120
BseRI	GAGGAG	1 cut(s)	224
BseSI	GKGCMC	1 cut(s)	400
BseXI	GCAGC	7 cut(s)	286, 343, 436, 494, 716, 796, 901
BseYI	CCCAGC	1 cut(s)	405
Bsh1236I	CGCG	6 cut(s)	146, 385, 412, 821, 830, 884
Bsh1285I	CGRYCG	1 cut(s)	828
BshFI	GGCC	3 cut(s)	68, 253, 626
BshNI	GGYRCC	1 cut(s)	397
BsiEI	CGRYCG	1 cut(s)	828
BsiHKAI	GWGCWC	2 cut(s)	469, 476
BsiHKCI	CYCGRG	1 cut(s)	621
BsiSI	CCGG	3 cut(s)	235, 622, 776
BslFI	GGGAC	1 cut(s)	20
BslI	CCNNNNNNNGG	4 cut(s)	240, 283, 622, 794
BsmAI	GTCTC	3 cut(s)	216, 422, 593
BsmFI	GGGAC	1 cut(s)	20
BsnI	GGCC	3 cut(s)	68, 253, 626
Bso31I	GGTCTC	1 cut(s)	422
BsoBI	CYCGRG	1 cut(s)	621
Bsp1286I	GDGCHC	3 cut(s)	400, 469, 476
Bsp143I	GATC	8 cut(s)	169, 237, 243, 487, 552, 816, 825, 840
Bsp19I	CCATGG	1 cut(s)	788
Bsp68I	TCGCGA	1 cut(s)	830
BspANI	GGCC	3 cut(s)	68, 253, 626
BspCNI	CTCAG	5 cut(s)	440, 453, 481, 562, 643
BspFNI	CGCG	6 cut(s)	146, 385, 412, 821, 830, 884
BspLI	GGNNCC	5 cut(s)	8, 9, 83, 399, 766
BspMI	ACCTGC	1 cut(s)	278
BspPI	GGATC	5 cut(s)	245, 251, 482, 547, 835
BspT107I	GGYRCC	1 cut(s)	397
BspTNI	GGTCTC	1 cut(s)	422
BsrBI	CCGCTC	3 cut(s)	371, 629, 642
BsrDI	GCAATG	1 cut(s)	673
BsrI	ACTGG	1 cut(s)	120
BssECI	CCNNGG	3 cut(s)	254, 621, 788
BssMI	GATC	8 cut(s)	169, 237, 243, 487, 552, 816, 825, 840
BssNI	GRCGYC	1 cut(s)	870
BssT1I	CCWWGG	1 cut(s)	788
Bst2UI	CCWGG	1 cut(s)	65
Bst4CI	ACNGT	2 cut(s)	26, 739
BstACI	GRCGYC	1 cut(s)	870
BstAPI	GCANNNNNTGC	1 cut(s)	337
BstC8I	GCNNGC	3 cut(s)	56, 342, 703
BstDEI	CTNAG	9 cut(s)	304, 427, 461, 468, 549, 611, 630, 663, 933
BstDSI	CCRYGG	1 cut(s)	788
BstF5I	GGATG	1 cut(s)	162
BstFNI	CGCG	6 cut(s)	146, 385, 412, 821, 830, 884
BstHHI	GCGC	4 cut(s)	95, 148, 385, 412
BstKTI	GATC	8 cut(s)	172, 240, 246, 490, 555, 819, 828, 843
BstMAI	GTCTC	3 cut(s)	216, 422, 593
BstMBI	GATC	8 cut(s)	169, 237, 243, 487, 552, 816, 825, 840
BstMCI	CGRYCG	1 cut(s)	828
BstMWI	GCNNNNNNNGC	4 cut(s)	305, 337, 790, 827
BstNI	CCWGG	1 cut(s)	65
BstNSI	RCATGY	1 cut(s)	449
BstSCI	CCNGG	4 cut(s)	63, 233, 620, 621
BstSFI	CTRYAG	1 cut(s)	391
BstSLI	GKGCMC	1 cut(s)	400
BstUI	CGCG	6 cut(s)	146, 385, 412, 821, 830, 884
BstV1I	GCAGC	7 cut(s)	286, 343, 436, 494, 716, 796, 901
BstV2I	GAAGAC	1 cut(s)	47
BstX2I	RGATCY	2 cut(s)	487, 552
BstYI	RGATCY	2 cut(s)	487, 552
BsuRI	GGCC	3 cut(s)	68, 253, 626
BtgI	CCRYGG	1 cut(s)	788
BtgZI	GCGATG	1 cut(s)	818
BtsCI	GGATG	1 cut(s)	162
BtsI	GCAGTG	3 cut(s)	49, 95, 368
BtsIMutI	CAGTG	3 cut(s)	49, 95, 368
BtuMI	TCGCGA	1 cut(s)	830
BveI	ACCTGC	1 cut(s)	278
Cac8I	GCNNGC	3 cut(s)	56, 342, 703
CaiI	CAGNNNCTG	1 cut(s)	895
CfoI	GCGC	4 cut(s)	95, 148, 385, 412
Cfr13I	GGNCC	3 cut(s)	7, 67, 624
Cfr9I	CCCGGG	1 cut(s)	621
CseI	GACGC	3 cut(s)	188, 810, 859
Csp6I	GTAC	1 cut(s)	595
CviAII	CATG	4 cut(s)	184, 446, 789, 799
CviQI	GTAC	1 cut(s)	595
DdeI	CTNAG	9 cut(s)	304, 427, 461, 468, 549, 611, 630, 663, 933
DpnI	GATC	8 cut(s)	171, 239, 245, 489, 554, 818, 827, 842
DpnII	GATC	8 cut(s)	169, 237, 243, 487, 552, 816, 825, 840
EaeI	YGGCCR	1 cut(s)	251
EciI	GGCGGA	2 cut(s)	466, 688
Ecl136II	GAGCTC	2 cut(s)	467, 474
Eco130I	CCWWGG	1 cut(s)	788
Eco24I	GRGCYC	2 cut(s)	469, 476
Eco31I	GGTCTC	1 cut(s)	422
Eco47I	GGWCC	1 cut(s)	7
Eco53kI	GAGCTC	2 cut(s)	467, 474
Eco88I	CYCGRG	1 cut(s)	621
EcoICRI	GAGCTC	2 cut(s)	467, 474
EcoO109I	RGGNCCY	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	63
EcoT14I	CCWWGG	1 cut(s)	788
EcoT38I	GRGCYC	2 cut(s)	469, 476
ErhI	CCWWGG	1 cut(s)	788
FaeI	CATG	4 cut(s)	187, 449, 792, 802
FaiI	YATR	8 cut(s)	150, 185, 197, 284, 318, 447, 790, 800
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	4 cut(s)	183, 445, 788, 798
FauI	CCCGC	3 cut(s)	364, 378, 405
FokI	GGATG	1 cut(s)	149
FriOI	GRGCYC	2 cut(s)	469, 476
FspBI	CTAG	3 cut(s)	29, 272, 402
GlaI	GCGC	4 cut(s)	94, 147, 384, 411
GsaI	CCCAGC	1 cut(s)	409
HaeIII	GGCC	3 cut(s)	68, 253, 626
HapII	CCGG	3 cut(s)	235, 622, 776
HgaI	GACGC	3 cut(s)	188, 810, 859
HhaI	GCGC	4 cut(s)	95, 148, 385, 412
Hin1I	GRCGYC	1 cut(s)	870
Hin1II	CATG	4 cut(s)	187, 449, 792, 802
Hin6I	GCGC	4 cut(s)	93, 146, 383, 410
HinP1I	GCGC	4 cut(s)	93, 146, 383, 410
HincII	GTYRAC	1 cut(s)	125
HindII	GTYRAC	1 cut(s)	125
HinfI	GANTC	3 cut(s)	601, 859, 924
HpaII	CCGG	3 cut(s)	235, 622, 776
HphI	GGTGA	4 cut(s)	424, 521, 850, 865
Hpy166II	GTNNAC	1 cut(s)	125
Hpy188I	TCNGA	9 cut(s)	81, 174, 462, 471, 552, 633, 722, 816, 923
Hpy188III	TCNNGA	4 cut(s)	241, 556, 569, 829
Hpy8I	GTNNAC	1 cut(s)	125
Hpy99I	CGWCG	5 cut(s)	81, 204, 826, 835, 923
HpyAV	CCTTC	1 cut(s)	575
HpyCH4III	ACNGT	2 cut(s)	26, 739
HpyCH4IV	ACGT	1 cut(s)	193
HpyCH4V	TGCA	2 cut(s)	355, 377
HpyF10VI	GCNNNNNNNGC	4 cut(s)	305, 337, 790, 827
HpyF3I	CTNAG	9 cut(s)	304, 427, 461, 468, 549, 611, 630, 663, 933
HpySE526I	ACGT	1 cut(s)	193
Hsp92I	GRCGYC	1 cut(s)	870
Hsp92II	CATG	4 cut(s)	187, 449, 792, 802
HspAI	GCGC	4 cut(s)	93, 146, 383, 410
KflI	GGGWCCC	1 cut(s)	7
Kzo9I	GATC	8 cut(s)	169, 237, 243, 487, 552, 816, 825, 840
LmnI	GCTCC	5 cut(s)	211, 328, 368, 479, 718
Lsp1109I	GCAGC	7 cut(s)	286, 343, 436, 494, 716, 796, 901
LweI	GCATC	1 cut(s)	327
MaeI	CTAG	3 cut(s)	29, 272, 402
MaeII	ACGT	1 cut(s)	193
MaeIII	GTNAC	4 cut(s)	320, 430, 514, 871
MalI	GATC	8 cut(s)	171, 239, 245, 489, 554, 818, 827, 842
MbiI	CCGCTC	3 cut(s)	371, 629, 642
MboI	GATC	8 cut(s)	169, 237, 243, 487, 552, 816, 825, 840
MboII	GAAGA	3 cut(s)	52, 199, 432
MflI	RGATCY	2 cut(s)	487, 552
MhlI	GDGCHC	3 cut(s)	400, 469, 476
MluI	ACGCGT	1 cut(s)	882
MlyI	GAGTC	2 cut(s)	595, 853
MmeI	TCCRAC	3 cut(s)	59, 165, 901
MseI	TTAA	1 cut(s)	741
MslI	CAYNNNNRTG	1 cut(s)	803
MspA1I	CMGCKG	1 cut(s)	729
MspI	CCGG	3 cut(s)	235, 622, 776
MspR9I	CCNGG	4 cut(s)	65, 235, 622, 623
MvaI	CCWGG	1 cut(s)	65
MvnI	CGCG	6 cut(s)	146, 385, 412, 821, 830, 884
MwoI	GCNNNNNNNGC	4 cut(s)	305, 337, 790, 827
NciI	CCSGG	3 cut(s)	235, 622, 623
NcoI	CCATGG	1 cut(s)	788
NdeII	GATC	8 cut(s)	169, 237, 243, 487, 552, 816, 825, 840
NlaIII	CATG	4 cut(s)	187, 449, 792, 802
NlaIV	GGNNCC	5 cut(s)	8, 9, 83, 399, 766
NmeAIII	GCCGAG	1 cut(s)	279
NmuCI	GTSAC	3 cut(s)	430, 514, 871
NruI	TCGCGA	1 cut(s)	830
NspI	RCATGY	1 cut(s)	449
PcsI	WCGNNNNNNNCGW	1 cut(s)	915
PfeI	GAWTC	1 cut(s)	924
PflMI	CCANNNNNTGG	1 cut(s)	283
Ple19I	CGATCG	1 cut(s)	828
PleI	GAGTC	2 cut(s)	595, 853
PpsI	GAGTC	2 cut(s)	595, 853
PpuMI	RGGWCCY	1 cut(s)	7
Psp124BI	GAGCTC	2 cut(s)	469, 476
Psp5II	RGGWCCY	1 cut(s)	7
Psp6I	CCWGG	1 cut(s)	63
PspFI	CCCAGC	1 cut(s)	405
PspGI	CCWGG	1 cut(s)	63
PspN4I	GGNNCC	5 cut(s)	8, 9, 83, 399, 766
PspPI	GGNCC	3 cut(s)	7, 67, 624
PspPPI	RGGWCCY	1 cut(s)	7
PstNI	CAGNNNCTG	1 cut(s)	895
PsuI	RGATCY	2 cut(s)	487, 552
PvuI	CGATCG	1 cut(s)	828
RruI	TCGCGA	1 cut(s)	830
RsaI	GTAC	1 cut(s)	596
RsaNI	GTAC	1 cut(s)	595
RseI	CAYNNNNRTG	1 cut(s)	803
SacI	GAGCTC	2 cut(s)	469, 476
SaqAI	TTAA	1 cut(s)	741
Sau3AI	GATC	8 cut(s)	169, 237, 243, 487, 552, 816, 825, 840
Sau96I	GGNCC	3 cut(s)	7, 67, 624
SchI	GAGTC	2 cut(s)	595, 853
ScrFI	CCNGG	4 cut(s)	65, 235, 622, 623
SduI	GDGCHC	3 cut(s)	400, 469, 476
SfaNI	GCATC	1 cut(s)	327
SfcI	CTRYAG	1 cut(s)	391
SinI	GGWCC	1 cut(s)	7
SmaI	CCCGGG	1 cut(s)	623
SmiMI	CAYNNNNRTG	1 cut(s)	803
SspMI	CTAG	3 cut(s)	29, 272, 402
SstI	GAGCTC	2 cut(s)	469, 476
StyD4I	CCNGG	4 cut(s)	63, 233, 620, 621
StyI	CCWWGG	1 cut(s)	788
TaaI	ACNGT	2 cut(s)	26, 739
TaiI	ACGT	1 cut(s)	196
TaqI	TCGA	2 cut(s)	313, 824
TauI	GCSGC	8 cut(s)	98, 347, 455, 482, 629, 642, 729, 752
TfiI	GAWTC	1 cut(s)	924
Tru1I	TTAA	1 cut(s)	741
Tru9I	TTAA	1 cut(s)	741
TscAI	CASTG	3 cut(s)	56, 95, 368
TseFI	GTSAC	3 cut(s)	430, 514, 871
TseI	GCWGC	7 cut(s)	299, 331, 449, 482, 729, 784, 889
Tsp45I	GTSAC	3 cut(s)	430, 514, 871
TspDTI	ATGAA	2 cut(s)	200, 821
TspGWI	ACGGA	1 cut(s)	65
TspMI	CCCGGG	1 cut(s)	621
TspRI	CASTG	3 cut(s)	56, 95, 368
Van91I	CCANNNNNTGG	1 cut(s)	283
VpaK11BI	GGWCC	1 cut(s)	7
XceI	RCATGY	1 cut(s)	449
XmaI	CCCGGG	1 cut(s)	621
XspI	CTAG	3 cut(s)	29, 272, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.