Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0031101

Physical Location & Seq

Genomic Coordinates Reverse (-)

65247424 .. 65249268

Gene Structure 1845 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG405100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGCTGCCCATCGACACACACAGTCTCACTCACTCAGTCACCGCTTCTTCACATGCTGCTGCCTCTCTGAGAGCTCAGAGCTCCGCCGCAGCAGATCCCAACCTCCCCTCTCCCAATGGGGTCACTTGCTCTCACCACCGCCCCTCTCCCCTTTCTCAGATCCTGAACGCCTTCCCGAAATCTCTATCACTAAAATCGAGTACGAGACTCCAAACCCAAGCCCGACCCGGCCCGCTCAGAACCGCCGCTCTCGGCTTCAACAAAACCCTAAGCCCTCTCATTGCCCTCCCCAAACTCGCGACTCCGCCCGCGAGTTCGCTCCCCTCCGAAGCCGCTGCTTGACCGTTAAGGCCGCCGCTTCCAGCGGTGGTTCCATTACTCCGGCGAAGCAGCCATGGCAAGGCATGGCGATGAAGCCTCTGATCGCGTCGATCGCGACGGGGGTGATCCTCTGGTTCGTGCCGACTCCTGTTGGCGTCACCAAAAACGCATGGCAGCTTCTGGCTGTTGCTAAACTGCTGCCGGCACTAAATGGTAAATTAACAGGACTAGCCTTCAGGGTTCCCACTGTCGATTTTACCGTGGTTGACCTGACACTGAGACTTGAGAAGAAGGCTACTAAAGATGAGACTGAAAATGCTTTTCACTATGATTTCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006536 GO:0006541 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009064 GO:0009507 GO:0009526 GO:0009534 GO:0009536 GO:0009579 GO:0009605 GO:0009607 GO:0009624 GO:0009941 GO:0009987 GO:0015075 GO:0015131 GO:0015139 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015729 GO:0015740 GO:0015742 GO:0015743 GO:0015849 GO:0016020 GO:0019676 GO:0019740 GO:0019752 GO:0022857 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051181 GO:0051184 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071423 GO:0071702 GO:0071704 GO:0098656 GO:1901564 GO:1901605 GO:1902356 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_sulph_symp

Protein Analysis

220

Amino Acids

24.44

Weight (kDa)

9.86

Isoelectric Point (pI)

70.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gp_dh_C	PF02800	169 - 215	3.2e-12	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0031101)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000830.1_g000052
rosa_samantha	Rh4CG405100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	236, 249
AccII	CGCG	4 cut(s)	300, 312, 428, 437
AclWI	GGATC	3 cut(s)	90, 155, 442
AcuI	CTGAAG	1 cut(s)	541
AcyI	GRCGYC	1 cut(s)	477
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	1 cut(s)	401
AgsI	TTSAA	1 cut(s)	260
AluBI	AGCT	3 cut(s)	75, 82, 499
AluI	AGCT	3 cut(s)	75, 82, 499
Alw21I	GWGCWC	2 cut(s)	77, 84
Alw26I	GTCTC	4 cut(s)	30, 200, 595, 623
AlwI	GGATC	3 cut(s)	90, 155, 442
AlwNI	CAGNNNCTG	2 cut(s)	164, 502
AoxI	GGCC	2 cut(s)	230, 351
ApeKI	GCWGC	8 cut(s)	5, 57, 60, 90, 336, 391, 496, 520
Asp700I	GAANNNNTTC	1 cut(s)	171
AspS9I	GGNCC	1 cut(s)	231
AsuC2I	CCSGG	1 cut(s)	229
AsuHPI	GGTGA	4 cut(s)	32, 126, 457, 472
BanII	GRGCYC	2 cut(s)	77, 84
Bbv12I	GWGCWC	2 cut(s)	77, 84
BbvI	GCAGC	7 cut(s)	44, 47, 102, 323, 403, 507, 508
BccI	CCATC	1 cut(s)	18
BcgI	CGANNNNNNTGC	2 cut(s)	318, 352
BcnI	CCSGG	1 cut(s)	229
BcoDI	GTCTC	4 cut(s)	30, 200, 595, 623
BfaI	CTAG	1 cut(s)	551
Bme1390I	CCNGG	1 cut(s)	229
BmgT120I	GGNCC	1 cut(s)	231
BmiI	GGNNCC	2 cut(s)	373, 564
BmrFI	CCNGG	1 cut(s)	229
Bpu10I	CCTNAGC	1 cut(s)	270
BpuEI	CTTGAG	1 cut(s)	626
BpuMI	CCSGG	1 cut(s)	229
BsaHI	GRCGYC	1 cut(s)	477
BsaJI	CCNNGG	2 cut(s)	395, 582
Bsc4I	CCNNNNNNNGG	1 cut(s)	401
Bse118I	RCCGGY	1 cut(s)	523
Bse3DI	GCAATG	1 cut(s)	280
BseDI	CCNNGG	2 cut(s)	395, 582
BseLI	CCNNNNNNNGG	1 cut(s)	401
BseMI	GCAATG	1 cut(s)	280
BseMII	CTCAG	6 cut(s)	49, 60, 90, 171, 251, 590
BseXI	GCAGC	7 cut(s)	44, 47, 102, 323, 403, 507, 508
Bsh1236I	CGCG	4 cut(s)	300, 312, 428, 437
Bsh1285I	CGRYCG	1 cut(s)	435
BshFI	GGCC	2 cut(s)	232, 353
BsiEI	CGRYCG	1 cut(s)	435
BsiHKAI	GWGCWC	2 cut(s)	77, 84
BsiSI	CCGG	3 cut(s)	229, 383, 524
BslI	CCNNNNNNNGG	1 cut(s)	401
BsmAI	GTCTC	4 cut(s)	30, 200, 595, 623
BsnI	GGCC	2 cut(s)	232, 353
Bsp1286I	GDGCHC	2 cut(s)	77, 84
Bsp143I	GATC	5 cut(s)	95, 160, 423, 432, 447
Bsp19I	CCATGG	1 cut(s)	395
Bsp68I	TCGCGA	2 cut(s)	300, 437
BspANI	GGCC	2 cut(s)	232, 353
BspCNI	CTCAG	6 cut(s)	48, 61, 89, 170, 250, 591
BspFNI	CGCG	4 cut(s)	300, 312, 428, 437
BspLI	GGNNCC	2 cut(s)	373, 564
BspPI	GGATC	3 cut(s)	90, 155, 442
BsrBI	CCGCTC	2 cut(s)	236, 249
BsrDI	GCAATG	1 cut(s)	280
BsrFI	RCCGGY	1 cut(s)	523
BssAI	RCCGGY	1 cut(s)	523
BssECI	CCNNGG	2 cut(s)	395, 582
BssMI	GATC	5 cut(s)	95, 160, 423, 432, 447
BssNI	GRCGYC	1 cut(s)	477
BssT1I	CCWWGG	1 cut(s)	395
Bst4CI	ACNGT	4 cut(s)	24, 346, 571, 583
BstACI	GRCGYC	1 cut(s)	477
BstC8I	GCNNGC	3 cut(s)	234, 310, 525
BstDEI	CTNAG	7 cut(s)	35, 69, 76, 157, 237, 270, 599
BstDSI	CCRYGG	2 cut(s)	395, 582
BstFNI	CGCG	4 cut(s)	300, 312, 428, 437
BstKTI	GATC	5 cut(s)	98, 163, 426, 435, 450
BstMAI	GTCTC	4 cut(s)	30, 200, 595, 623
BstMBI	GATC	5 cut(s)	95, 160, 423, 432, 447
BstMCI	CGRYCG	1 cut(s)	435
BstMWI	GCNNNNNNNGC	2 cut(s)	397, 434
BstNSI	RCATGY	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	227
BstUI	CGCG	4 cut(s)	300, 312, 428, 437
BstV1I	GCAGC	7 cut(s)	44, 47, 102, 323, 403, 507, 508
BstX2I	RGATCY	2 cut(s)	95, 160
BstYI	RGATCY	2 cut(s)	95, 160
BsuRI	GGCC	2 cut(s)	232, 353
BtgI	CCRYGG	2 cut(s)	395, 582
BtgZI	GCGATG	1 cut(s)	425
BtsIMutI	CAGTG	2 cut(s)	567, 596
BtuMI	TCGCGA	2 cut(s)	300, 437
Cac8I	GCNNGC	3 cut(s)	234, 310, 525
CaiI	CAGNNNCTG	2 cut(s)	164, 502
Cfr10I	RCCGGY	1 cut(s)	523
Cfr13I	GGNCC	1 cut(s)	231
CseI	GACGC	2 cut(s)	417, 466
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	4 cut(s)	54, 396, 406, 492
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	7 cut(s)	35, 69, 76, 157, 237, 270, 599
DpnI	GATC	5 cut(s)	97, 162, 425, 434, 449
DpnII	GATC	5 cut(s)	95, 160, 423, 432, 447
EciI	GGCGGA	2 cut(s)	74, 295
Ecl136II	GAGCTC	2 cut(s)	75, 82
Eco130I	CCWWGG	1 cut(s)	395
Eco24I	GRGCYC	2 cut(s)	77, 84
Eco53kI	GAGCTC	2 cut(s)	75, 82
Eco57I	CTGAAG	1 cut(s)	541
EcoICRI	GAGCTC	2 cut(s)	75, 82
EcoT14I	CCWWGG	1 cut(s)	395
EcoT38I	GRGCYC	2 cut(s)	77, 84
ErhI	CCWWGG	1 cut(s)	395
FaeI	CATG	4 cut(s)	57, 399, 409, 495
FaiI	YATR	5 cut(s)	55, 397, 407, 493, 651
FatI	CATG	4 cut(s)	53, 395, 405, 491
FauI	CCCGC	2 cut(s)	241, 317
FriOI	GRGCYC	2 cut(s)	77, 84
FspBI	CTAG	1 cut(s)	551
HaeIII	GGCC	2 cut(s)	232, 353
HapII	CCGG	3 cut(s)	229, 383, 524
HgaI	GACGC	2 cut(s)	417, 466
Hin1I	GRCGYC	1 cut(s)	477
Hin1II	CATG	4 cut(s)	57, 399, 409, 495
HincII	GTYRAC	1 cut(s)	589
HindII	GTYRAC	1 cut(s)	589
HinfI	GANTC	3 cut(s)	208, 302, 466
HpaII	CCGG	3 cut(s)	229, 383, 524
HphI	GGTGA	4 cut(s)	32, 126, 457, 472
Hpy166II	GTNNAC	1 cut(s)	589
Hpy188I	TCNGA	6 cut(s)	70, 79, 160, 240, 329, 423
Hpy188III	TCNNGA	4 cut(s)	164, 176, 299, 436
Hpy8I	GTNNAC	1 cut(s)	589
Hpy99I	CGWCG	2 cut(s)	433, 442
HpyAV	CCTTC	3 cut(s)	182, 565, 607
HpyCH4III	ACNGT	4 cut(s)	24, 346, 571, 583
HpyF10VI	GCNNNNNNNGC	2 cut(s)	397, 434
HpyF3I	CTNAG	7 cut(s)	35, 69, 76, 157, 237, 270, 599
Hsp92I	GRCGYC	1 cut(s)	477
Hsp92II	CATG	4 cut(s)	57, 399, 409, 495
KroI	GCCGGC	1 cut(s)	523
KroNI	GCCGGC	1 cut(s)	525
Kzo9I	GATC	5 cut(s)	95, 160, 423, 432, 447
LmnI	GCTCC	2 cut(s)	87, 325
Lsp1109I	GCAGC	7 cut(s)	44, 47, 102, 323, 403, 507, 508
MaeI	CTAG	1 cut(s)	551
MaeIII	GTNAC	3 cut(s)	38, 122, 478
MalI	GATC	5 cut(s)	97, 162, 425, 434, 449
MbiI	CCGCTC	2 cut(s)	236, 249
MboI	GATC	5 cut(s)	95, 160, 423, 432, 447
MboII	GAAGA	2 cut(s)	40, 622
MflI	RGATCY	2 cut(s)	95, 160
MhlI	GDGCHC	2 cut(s)	77, 84
MluCI	AATT	1 cut(s)	539
MlyI	GAGTC	3 cut(s)	202, 296, 460
MnlI	CCTC	9 cut(s)	74, 114, 119, 155, 286, 297, 335, 429, 461
MroNI	GCCGGC	1 cut(s)	523
MroXI	GAANNNNTTC	1 cut(s)	171
MseI	TTAA	2 cut(s)	348, 542
MslI	CAYNNNNRTG	1 cut(s)	410
MspA1I	CMGCKG	2 cut(s)	336, 366
MspI	CCGG	3 cut(s)	229, 383, 524
MspR9I	CCNGG	1 cut(s)	229
MvnI	CGCG	4 cut(s)	300, 312, 428, 437
MwoI	GCNNNNNNNGC	2 cut(s)	397, 434
NaeI	GCCGGC	1 cut(s)	525
NciI	CCSGG	1 cut(s)	229
NcoI	CCATGG	1 cut(s)	395
NdeII	GATC	5 cut(s)	95, 160, 423, 432, 447
NgoMIV	GCCGGC	1 cut(s)	523
NlaIII	CATG	4 cut(s)	57, 399, 409, 495
NlaIV	GGNNCC	2 cut(s)	373, 564
NmeAIII	GCCGAG	1 cut(s)	232
NmuCI	GTSAC	3 cut(s)	38, 122, 478
NruI	TCGCGA	2 cut(s)	300, 437
NspI	RCATGY	1 cut(s)	57
PcsI	WCGNNNNNNNCGW	1 cut(s)	579
PdiI	GCCGGC	1 cut(s)	525
PdmI	GAANNNNTTC	1 cut(s)	171
Ple19I	CGATCG	1 cut(s)	435
PleI	GAGTC	3 cut(s)	202, 296, 460
PpsI	GAGTC	3 cut(s)	202, 296, 460
Psp124BI	GAGCTC	2 cut(s)	77, 84
PspN4I	GGNNCC	2 cut(s)	373, 564
PspPI	GGNCC	1 cut(s)	231
PstNI	CAGNNNCTG	2 cut(s)	164, 502
PsuI	RGATCY	2 cut(s)	95, 160
PvuI	CGATCG	1 cut(s)	435
RruI	TCGCGA	2 cut(s)	300, 437
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	410
SacI	GAGCTC	2 cut(s)	77, 84
SaqAI	TTAA	2 cut(s)	348, 542
Sau3AI	GATC	5 cut(s)	95, 160, 423, 432, 447
Sau96I	GGNCC	1 cut(s)	231
SchI	GAGTC	3 cut(s)	202, 296, 460
ScrFI	CCNGG	1 cut(s)	229
SduI	GDGCHC	2 cut(s)	77, 84
SetI	ASST	5 cut(s)	77, 84, 106, 501, 594
SmiMI	CAYNNNNRTG	1 cut(s)	410
SmlI	CTYRAG	1 cut(s)	605
SmoI	CTYRAG	1 cut(s)	605
Sse9I	AATT	1 cut(s)	539
SspMI	CTAG	1 cut(s)	551
SstI	GAGCTC	2 cut(s)	77, 84
StyD4I	CCNGG	1 cut(s)	227
StyI	CCWWGG	1 cut(s)	395
TaaI	ACNGT	4 cut(s)	24, 346, 571, 583
TaqI	TCGA	4 cut(s)	13, 198, 431, 573
TasI	AATT	1 cut(s)	539
TauI	GCSGC	5 cut(s)	90, 249, 336, 356, 359
Tru1I	TTAA	2 cut(s)	348, 542
Tru9I	TTAA	2 cut(s)	348, 542
TscAI	CASTG	2 cut(s)	574, 603
TseFI	GTSAC	3 cut(s)	38, 122, 478
TseI	GCWGC	8 cut(s)	5, 57, 60, 90, 336, 391, 496, 520
Tsp45I	GTSAC	3 cut(s)	38, 122, 478
TspDTI	ATGAA	1 cut(s)	428
TspRI	CASTG	2 cut(s)	574, 603
XceI	RCATGY	1 cut(s)	57
XmnI	GAANNNNTTC	1 cut(s)	171
XspI	CTAG	1 cut(s)	551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.