Rmu_sc0000907.1_g000031

BEST Arabidopsis thaliana protein match is glycosyltransferase family protein 2 (TAIR AT5G60700.1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000907.1
OG0031105
Physical Location & Seq
Forward (+)
154645 .. 156240
1596 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 684 bp
ctgcaggattcgcttcgcattctggacttcgtcgatggattcgagtggaagttcggcgacaaggtcgtgcattaccggacgcagaacgcgggcctccaggcccagtggctcgaggcctggtggcccagctccgatcacgagttcgcgttcgtcgtggaagatgacttggaggtgtcgccgctctattacaagtttctcaagaatctgattgtgaattaccactacaacgcctccaattctcgtgcttacatctatggagcttcgcttcagcgaccaaggtttgttccaggtaaacacgggaacaaactacaattggatgatggaacacgactctttttgtaccaactggttggcacttggggtcagcttctctttcctaaaccttggaaagagttcaggttgtggtacgacaaacacaaggccaaaggcattgagccaatcctcaacgtcatggtaacaactgggtggtataaaaagatgggagagaagatttggacacctttttttttggagaaatgcagcatttcattaaagagggcaaaagaatggcttgagcctctgcagcttcgactgagctctcacaagatcgctttgcaccaccgccaatcaccgagctgctatgatcacggatcacaactcctaatcccccagaagaagggccggcccacgccgcatcacaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

227

Amino Acids

26.81

Weight (kDa)

9.43

Isoelectric Point (pI)

46.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031105)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000907.1_g000031
rosa_wichuraiana Rw0G012820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 181
AccII CGCG 2 cut(s) 89, 146
AciI CCGC 4 cut(s) 89, 179, 601, 671
AclWI GGATC 1 cut(s) 637
AcuI CTGAAG 1 cut(s) 251
AfaI GTAC 2 cut(s) 341, 407
AfiI CCNNNNNNNGG 1 cut(s) 655
AjnI CCWGG 3 cut(s) 96, 116, 286
AluBI AGCT 6 cut(s) 129, 260, 367, 565, 576, 615
AluI AGCT 6 cut(s) 129, 260, 367, 565, 576, 615
Alw21I GWGCWC 1 cut(s) 578
AlwI GGATC 1 cut(s) 637
Ama87I CYCGRG 1 cut(s) 110
AoxI GGCC 7 cut(s) 91, 99, 114, 122, 420, 658, 662
ApeKI GCWGC 3 cut(s) 519, 562, 615
Asp700I GAANNNNTTC 1 cut(s) 392
AspS9I GGNCC 5 cut(s) 91, 100, 123, 658, 663
AsuHPI GGTGA 1 cut(s) 600
AvaI CYCGRG 1 cut(s) 110
BanII GRGCYC 1 cut(s) 578
BauI CACGAG 2 cut(s) 137, 240
Bbv12I GWGCWC 1 cut(s) 578
BbvI GCAGC 3 cut(s) 531, 574, 602
BccI CCATC 3 cut(s) 29, 314, 472
BciT130I CCWGG 3 cut(s) 98, 118, 288
BclI TGATCA 1 cut(s) 622
BfmI CTRYAG 2 cut(s) 2, 560
BisI GCNGC 5 cut(s) 179, 520, 563, 616, 671
BlsI GCNGC 5 cut(s) 180, 521, 564, 617, 672
Bme1390I CCNGG 3 cut(s) 98, 118, 288
BmeT110I CYCGRG 1 cut(s) 110
BmgT120I GGNCC 5 cut(s) 91, 100, 123, 658, 663
BmrFI CCNGG 3 cut(s) 98, 118, 288
BmrI ACTGGG 2 cut(s) 97, 471
BmuI ACTGGG 2 cut(s) 97, 471
BpmI CTGGAG 1 cut(s) 80
BpuEI CTTGAG 2 cut(s) 182, 572
BsaJI CCNNGG 2 cut(s) 275, 383
BsaWI WCCGGW 1 cut(s) 75
BsaXI ACNNNNNCTCC 2 cut(s) 215, 245
Bsc4I CCNNNNNNNGG 1 cut(s) 655
Bse118I RCCGGY 1 cut(s) 660
Bse1I ACTGG 3 cut(s) 103, 351, 466
BseBI CCWGG 3 cut(s) 98, 118, 288
BseDI CCNNGG 2 cut(s) 275, 383
BseGI GGATG 1 cut(s) 322
BseLI CCNNNNNNNGG 1 cut(s) 655
BseMII CTCAG 1 cut(s) 563
BseNI ACTGG 3 cut(s) 103, 351, 466
BseXI GCAGC 3 cut(s) 531, 574, 602
BseYI CCCAGC 1 cut(s) 125
Bsh1236I CGCG 2 cut(s) 89, 146
BshFI GGCC 7 cut(s) 93, 101, 116, 124, 422, 660, 664
BsiHKAI GWGCWC 1 cut(s) 578
BsiHKCI CYCGRG 1 cut(s) 110
BsiSI CCGG 2 cut(s) 76, 661
BslI CCNNNNNNNGG 1 cut(s) 655
BsmI GAATGC 1 cut(s) 18
BsnI GGCC 7 cut(s) 93, 101, 116, 124, 422, 660, 664
BsoBI CYCGRG 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 578
Bsp143I GATC 4 cut(s) 133, 585, 622, 629
BspACI CCGC 4 cut(s) 89, 179, 601, 671
BspANI GGCC 7 cut(s) 93, 101, 116, 124, 422, 660, 664
BspCNI CTCAG 1 cut(s) 564
BspFNI CGCG 2 cut(s) 89, 146
BspMAI CTGCAG 2 cut(s) 6, 564
BspPI GGATC 1 cut(s) 637
BsrBI CCGCTC 1 cut(s) 181
BsrFI RCCGGY 1 cut(s) 660
BsrI ACTGG 3 cut(s) 103, 351, 466
BssAI RCCGGY 1 cut(s) 660
BssECI CCNNGG 2 cut(s) 275, 383
BssMI GATC 4 cut(s) 133, 585, 622, 629
BssSI CACGAG 2 cut(s) 137, 240
BssT1I CCWWGG 2 cut(s) 275, 383
Bst2BI CACGAG 2 cut(s) 137, 240
Bst2UI CCWGG 3 cut(s) 98, 118, 288
BstC8I GCNNGC 2 cut(s) 91, 662
BstDEI CTNAG 1 cut(s) 572
BstF5I GGATG 1 cut(s) 322
BstFNI CGCG 2 cut(s) 89, 146
BstKTI GATC 4 cut(s) 136, 588, 625, 632
BstMBI GATC 4 cut(s) 133, 585, 622, 629
BstMWI GCNNNNNNNGC 3 cut(s) 10, 562, 670
BstNI CCWGG 3 cut(s) 98, 118, 288
BstSCI CCNGG 3 cut(s) 96, 116, 286
BstSFI CTRYAG 2 cut(s) 2, 560
BstUI CGCG 2 cut(s) 89, 146
BstV1I GCAGC 3 cut(s) 531, 574, 602
BstXI CCANNNNNNTGG 1 cut(s) 350
BsuRI GGCC 7 cut(s) 93, 101, 116, 124, 422, 660, 664
BtsCI GGATG 1 cut(s) 322
BtsIMutI CAGTG 1 cut(s) 110
Cac8I GCNNGC 2 cut(s) 91, 662
Cfr10I RCCGGY 1 cut(s) 660
Cfr13I GGNCC 5 cut(s) 91, 100, 123, 658, 663
CseI GACGC 1 cut(s) 88
Csp6I GTAC 2 cut(s) 340, 406
CviAII CATG 1 cut(s) 451
CviQI GTAC 2 cut(s) 340, 406
DdeI CTNAG 1 cut(s) 572
DpnI GATC 4 cut(s) 135, 587, 624, 631
DpnII GATC 4 cut(s) 133, 585, 622, 629
Ecl136II GAGCTC 1 cut(s) 576
Eco130I CCWWGG 2 cut(s) 275, 383
Eco147I AGGCCT 1 cut(s) 116
Eco24I GRGCYC 1 cut(s) 578
Eco53kI GAGCTC 1 cut(s) 576
Eco57I CTGAAG 1 cut(s) 251
Eco88I CYCGRG 1 cut(s) 110
EcoICRI GAGCTC 1 cut(s) 576
EcoRII CCWGG 3 cut(s) 96, 116, 286
EcoT14I CCWWGG 2 cut(s) 275, 383
EcoT38I GRGCYC 1 cut(s) 578
ErhI CCWWGG 2 cut(s) 275, 383
FaeI CATG 1 cut(s) 454
FaiI YATR 4 cut(s) 255, 452, 471, 621
FalI AAGNNNNNCTT 2 cut(s) 534, 566
FatI CATG 1 cut(s) 450
FauI CCCGC 1 cut(s) 82
FbaI TGATCA 1 cut(s) 622
Fnu4HI GCNGC 5 cut(s) 179, 520, 563, 616, 671
FokI GGATG 1 cut(s) 329
FriOI GRGCYC 1 cut(s) 578
FseI GGCCGGCC 1 cut(s) 664
Fsp4HI GCNGC 5 cut(s) 179, 520, 563, 616, 671
GluI GCNGC 5 cut(s) 179, 520, 563, 616, 671
GsaI CCCAGC 1 cut(s) 129
GsuI CTGGAG 1 cut(s) 80
HaeIII GGCC 7 cut(s) 93, 101, 116, 124, 422, 660, 664
HapII CCGG 2 cut(s) 76, 661
HgaI GACGC 1 cut(s) 88
Hin1II CATG 1 cut(s) 454
HinfI GANTC 4 cut(s) 8, 39, 202, 330
HpaII CCGG 2 cut(s) 76, 661
HphI GGTGA 1 cut(s) 600
Hpy166II GTNNAC 1 cut(s) 293
Hpy188I TCNGA 2 cut(s) 133, 207
Hpy188III TCNNGA 3 cut(s) 23, 137, 199
Hpy8I GTNNAC 1 cut(s) 293
Hpy99I CGWCG 2 cut(s) 35, 155
HpyAV CCTTC 1 cut(s) 649
HpyCH4IV ACGT 1 cut(s) 447
HpyCH4V TGCA 5 cut(s) 4, 70, 519, 562, 595
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 562, 670
HpyF3I CTNAG 1 cut(s) 572
HpySE526I ACGT 1 cut(s) 447
Hsp92II CATG 1 cut(s) 454
KroI GCCGGC 1 cut(s) 660
KroNI GCCGGC 1 cut(s) 662
Ksp22I TGATCA 1 cut(s) 622
Kzo9I GATC 4 cut(s) 133, 585, 622, 629
LmnI GCTCC 2 cut(s) 134, 257
Lsp1109I GCAGC 3 cut(s) 531, 574, 602
MaeII ACGT 1 cut(s) 447
MaeIII GTNAC 1 cut(s) 454
MalI GATC 4 cut(s) 135, 587, 624, 631
MbiI CCGCTC 1 cut(s) 181
MboI GATC 4 cut(s) 133, 585, 622, 629
MboII GAAGA 3 cut(s) 170, 499, 664
MfeI CAATTG 2 cut(s) 311, 679
MhlI GDGCHC 1 cut(s) 578
MluCI AATT 4 cut(s) 214, 235, 311, 679
MlyI GAGTC 1 cut(s) 324
MnlI CCTC 7 cut(s) 104, 106, 163, 241, 452, 528, 567
MroNI GCCGGC 1 cut(s) 660
MroXI GAANNNNTTC 1 cut(s) 392
MseI TTAA 1 cut(s) 530
MspI CCGG 2 cut(s) 76, 661
MspR9I CCNGG 3 cut(s) 98, 118, 288
MunI CAATTG 2 cut(s) 311, 679
Mva1269I GAATGC 1 cut(s) 18
MvaI CCWGG 3 cut(s) 98, 118, 288
MvnI CGCG 2 cut(s) 89, 146
MwoI GCNNNNNNNGC 3 cut(s) 10, 562, 670
NaeI GCCGGC 1 cut(s) 662
NdeII GATC 4 cut(s) 133, 585, 622, 629
NgoMIV GCCGGC 1 cut(s) 660
NlaIII CATG 1 cut(s) 454
PaeR7I CTCGAG 1 cut(s) 110
PceI AGGCCT 1 cut(s) 116
PcsI WCGNNNNNNNCGW 2 cut(s) 39, 150
PctI GAATGC 1 cut(s) 18
PdiI GCCGGC 1 cut(s) 662
PdmI GAANNNNTTC 1 cut(s) 392
PfeI GAWTC 3 cut(s) 8, 39, 202
PflFI GACNNNGTC 2 cut(s) 29, 62
PkrI GCNGC 5 cut(s) 180, 521, 564, 617, 672
PleI GAGTC 1 cut(s) 324
PpsI GAGTC 1 cut(s) 324
Psp124BI GAGCTC 1 cut(s) 578
Psp6I CCWGG 3 cut(s) 96, 116, 286
PspFI CCCAGC 1 cut(s) 125
PspGI CCWGG 3 cut(s) 96, 116, 286
PspPI GGNCC 5 cut(s) 91, 100, 123, 658, 663
PspXI VCTCGAGB 1 cut(s) 110
PstI CTGCAG 2 cut(s) 6, 564
PsyI GACNNNGTC 2 cut(s) 29, 62
RigI GGCCGGCC 1 cut(s) 664
RsaI GTAC 2 cut(s) 341, 407
RsaNI GTAC 2 cut(s) 340, 406
SacI GAGCTC 1 cut(s) 578
SaqAI TTAA 1 cut(s) 530
SatI GCNGC 5 cut(s) 179, 520, 563, 616, 671
Sau3AI GATC 4 cut(s) 133, 585, 622, 629
Sau96I GGNCC 5 cut(s) 91, 100, 123, 658, 663
SchI GAGTC 1 cut(s) 324
ScrFI CCNGG 3 cut(s) 98, 118, 288
SduI GDGCHC 1 cut(s) 578
SfcI CTRYAG 2 cut(s) 2, 560
Sfr274I CTCGAG 1 cut(s) 110
SlaI CTCGAG 1 cut(s) 110
SmlI CTYRAG 3 cut(s) 110, 197, 551
SmoI CTYRAG 3 cut(s) 110, 197, 551
Sse9I AATT 4 cut(s) 214, 235, 311, 679
SseBI AGGCCT 1 cut(s) 116
SsiI CCGC 4 cut(s) 89, 179, 601, 671
SstI GAGCTC 1 cut(s) 578
StuI AGGCCT 1 cut(s) 116
StyD4I CCNGG 3 cut(s) 96, 116, 286
StyI CCWWGG 2 cut(s) 275, 383
TaiI ACGT 1 cut(s) 450
TaqI TCGA 4 cut(s) 33, 42, 111, 568
TasI AATT 4 cut(s) 214, 235, 311, 679
TauI GCSGC 2 cut(s) 181, 673
TfiI GAWTC 3 cut(s) 8, 39, 202
Tru1I TTAA 1 cut(s) 530
Tru9I TTAA 1 cut(s) 530
TscAI CASTG 1 cut(s) 110
TseI GCWGC 3 cut(s) 519, 562, 615
TspDTI ATGAA 1 cut(s) 516
TspGWI ACGGA 1 cut(s) 642
TspRI CASTG 1 cut(s) 110
Tth111I GACNNNGTC 2 cut(s) 29, 62
XhoI CTCGAG 1 cut(s) 110
XmnI GAANNNNTTC 1 cut(s) 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.