Rw0G012820

BEST Arabidopsis thaliana protein match is glycosyltransferase family protein 2 (TAIR AT5G60700.1)

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00568
Physical Location & Seq
Forward (+)
15458 .. 27256
11799 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G012820.1

Sequence Viewer

Length: 483 bp
CGTCACATTATGGACTTCGTCGATGGATTCGAGTGGAAGTTCAGGAACAAGGTCGCCTGGTGGCCAAGCTCCGATCACGAGTTTGCGTTCGTCGTGGAAGATGACTTGGAGGTGTTGCCGCTCTATTACAAGTTTCTCAAGAATCTGATTGTGAATTACTATTACAACGCCTCCAATTCTCGTCCTTACATCTATGGAGCTTCGCTTCAGCGACCAAGGTTTGTTCCAGGTAAACACGGGAACAAACTACAATTGGATGATGGAACACGACTCTTTTTGTACCAACTGGTTGGCACTTGGGGTCAGCTTCTCTTTCCTAAACCTTGGAAAGAGTTCAGGTTGTGGTACGACAAACACAAGGCCAAAGGCATTAAGCCAATCCTCAATGGCATGGTAACAACCGGGTGGTATAAAAAAATGGGAGAGAAGATTTGGACACCTTTTTTTTTGGAGAAATGCAGCATTTCATTAAAGACGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

19.11

Weight (kDa)

9.56

Isoelectric Point (pI)

25.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0031105)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000907.1_g000031
rosa_wichuraiana Rw0G012820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 121
AciI CCGC 1 cut(s) 119
AcoI YGGCCR 1 cut(s) 62
AcuI CTGAAG 1 cut(s) 191
AfaI GTAC 2 cut(s) 281, 347
AjnI CCWGG 2 cut(s) 56, 226
AluBI AGCT 3 cut(s) 69, 200, 307
AluI AGCT 3 cut(s) 69, 200, 307
AoxI GGCC 2 cut(s) 62, 360
ApeKI GCWGC 1 cut(s) 459
Asp700I GAANNNNTTC 1 cut(s) 332
AsuC2I CCSGG 1 cut(s) 403
BalI TGGCCA 1 cut(s) 64
BauI CACGAG 1 cut(s) 77
BbvI GCAGC 1 cut(s) 471
BccI CCATC 2 cut(s) 17, 254
BciT130I CCWGG 2 cut(s) 58, 228
BcnI CCSGG 1 cut(s) 403
BisI GCNGC 2 cut(s) 119, 460
BlsI GCNGC 2 cut(s) 120, 461
Bme1390I CCNGG 3 cut(s) 58, 228, 403
BmrFI CCNGG 3 cut(s) 58, 228, 403
BpuEI CTTGAG 1 cut(s) 122
BpuMI CCSGG 1 cut(s) 403
BsaJI CCNNGG 2 cut(s) 215, 323
BsaXI ACNNNNNCTCC 2 cut(s) 155, 185
Bse1I ACTGG 1 cut(s) 291
BseBI CCWGG 2 cut(s) 58, 228
BseDI CCNNGG 2 cut(s) 215, 323
BseGI GGATG 1 cut(s) 262
BseNI ACTGG 1 cut(s) 291
BseXI GCAGC 1 cut(s) 471
BshFI GGCC 2 cut(s) 64, 362
BsiSI CCGG 1 cut(s) 402
BsnI GGCC 2 cut(s) 64, 362
Bsp143I GATC 1 cut(s) 73
BspACI CCGC 1 cut(s) 119
BspANI GGCC 2 cut(s) 64, 362
BsrBI CCGCTC 1 cut(s) 121
BsrI ACTGG 1 cut(s) 291
BssECI CCNNGG 2 cut(s) 215, 323
BssMI GATC 1 cut(s) 73
BssSI CACGAG 1 cut(s) 77
BssT1I CCWWGG 2 cut(s) 215, 323
Bst2BI CACGAG 1 cut(s) 77
Bst2UI CCWGG 2 cut(s) 58, 228
BstF5I GGATG 1 cut(s) 262
BstKTI GATC 1 cut(s) 76
BstMBI GATC 1 cut(s) 73
BstNI CCWGG 2 cut(s) 58, 228
BstSCI CCNGG 3 cut(s) 56, 226, 401
BstV1I GCAGC 1 cut(s) 471
BstXI CCANNNNNNTGG 1 cut(s) 290
BsuRI GGCC 2 cut(s) 64, 362
BtsCI GGATG 1 cut(s) 262
Csp6I GTAC 2 cut(s) 280, 346
CviAII CATG 1 cut(s) 391
CviJI RGCY 6 cut(s) 64, 69, 200, 307, 362, 376
CviKI_1 RGCY 6 cut(s) 64, 69, 200, 307, 362, 376
CviQI GTAC 2 cut(s) 280, 346
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
EaeI YGGCCR 1 cut(s) 62
Eco130I CCWWGG 2 cut(s) 215, 323
Eco57I CTGAAG 1 cut(s) 191
EcoRII CCWGG 2 cut(s) 56, 226
EcoT14I CCWWGG 2 cut(s) 215, 323
ErhI CCWWGG 2 cut(s) 215, 323
FaeI CATG 1 cut(s) 394
FaiI YATR 5 cut(s) 11, 195, 392, 411, 481
FatI CATG 1 cut(s) 390
Fnu4HI GCNGC 2 cut(s) 119, 460
FokI GGATG 1 cut(s) 269
Fsp4HI GCNGC 2 cut(s) 119, 460
GluI GCNGC 2 cut(s) 119, 460
HaeIII GGCC 2 cut(s) 64, 362
HapII CCGG 1 cut(s) 402
Hin1II CATG 1 cut(s) 394
HinfI GANTC 3 cut(s) 27, 142, 270
HpaII CCGG 1 cut(s) 402
Hpy166II GTNNAC 1 cut(s) 233
Hpy188I TCNGA 2 cut(s) 73, 147
Hpy188III TCNNGA 3 cut(s) 43, 77, 139
Hpy8I GTNNAC 1 cut(s) 233
Hpy99I CGWCG 2 cut(s) 23, 95
HpyCH4V TGCA 1 cut(s) 459
Hsp92II CATG 1 cut(s) 394
Kzo9I GATC 1 cut(s) 73
LmnI GCTCC 2 cut(s) 74, 197
LpnPI CCDG 8 cut(s) 28, 43, 70, 213, 240, 272, 322, 415
Lsp1109I GCAGC 1 cut(s) 471
MaeIII GTNAC 2 cut(s) 2, 394
MalI GATC 1 cut(s) 75
MbiI CCGCTC 1 cut(s) 121
MboI GATC 1 cut(s) 73
MboII GAAGA 2 cut(s) 110, 439
MfeI CAATTG 1 cut(s) 251
MlsI TGGCCA 1 cut(s) 64
MluCI AATT 3 cut(s) 154, 175, 251
MluNI TGGCCA 1 cut(s) 64
MlyI GAGTC 1 cut(s) 264
MnlI CCTC 3 cut(s) 103, 181, 392
Mox20I TGGCCA 1 cut(s) 64
MroXI GAANNNNTTC 1 cut(s) 332
MscI TGGCCA 1 cut(s) 64
MseI TTAA 2 cut(s) 372, 470
Msp20I TGGCCA 1 cut(s) 64
MspI CCGG 1 cut(s) 402
MspR9I CCNGG 3 cut(s) 58, 228, 403
MunI CAATTG 1 cut(s) 251
MvaI CCWGG 2 cut(s) 58, 228
NciI CCSGG 1 cut(s) 403
NdeII GATC 1 cut(s) 73
NlaIII CATG 1 cut(s) 394
NmuCI GTSAC 1 cut(s) 2
PcsI WCGNNNNNNNCGW 1 cut(s) 27
PdmI GAANNNNTTC 1 cut(s) 332
PfeI GAWTC 2 cut(s) 27, 142
PflFI GACNNNGTC 1 cut(s) 17
PkrI GCNGC 2 cut(s) 120, 461
PleI GAGTC 1 cut(s) 264
PpsI GAGTC 1 cut(s) 264
Psp6I CCWGG 2 cut(s) 56, 226
PspGI CCWGG 2 cut(s) 56, 226
PsyI GACNNNGTC 1 cut(s) 17
RsaI GTAC 2 cut(s) 281, 347
RsaNI GTAC 2 cut(s) 280, 346
SaqAI TTAA 2 cut(s) 372, 470
SatI GCNGC 2 cut(s) 119, 460
Sau3AI GATC 1 cut(s) 73
SchI GAGTC 1 cut(s) 264
ScrFI CCNGG 3 cut(s) 58, 228, 403
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
Sse9I AATT 3 cut(s) 154, 175, 251
SsiI CCGC 1 cut(s) 119
StyD4I CCNGG 3 cut(s) 56, 226, 401
StyI CCWWGG 2 cut(s) 215, 323
TaqI TCGA 2 cut(s) 21, 30
TasI AATT 3 cut(s) 154, 175, 251
TauI GCSGC 1 cut(s) 121
TfiI GAWTC 2 cut(s) 27, 142
Tru1I TTAA 2 cut(s) 372, 470
Tru9I TTAA 2 cut(s) 372, 470
TseFI GTSAC 1 cut(s) 2
TseI GCWGC 1 cut(s) 459
Tsp45I GTSAC 1 cut(s) 2
TspDTI ATGAA 1 cut(s) 456
Tth111I GACNNNGTC 1 cut(s) 17
XmnI GAANNNNTTC 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.