Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000953.1

Orthogroup ID

OG0023057

Physical Location & Seq

Genomic Coordinates Forward (+)

25 .. 1967

Gene Structure 1943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

atggtctcagaagtaaaagctgataagacatgttcaacaaccacggctgcaacatcagtcaaaaccgagaggagctcaatcaggacaaggggttccggttcacccttcaggtgcatatcaactttggttcagcaaatgaatacggagaaggatcaggaattgtctacagccaggcttcggattgaggaactagaggcactggctgccagtcggcaaaaggaggtatgtttgctgaatactaggctagcagcaacagaaagcatgacacatgatgtcattcgagatttacttggtgtcaaattggacatgactaactatgcagacttgatagaccaataccaggttcaaaaattagtagaagaggctcatcagcagacagaagacttcctggcaaaggagcaagaaattctcaacttgagaaagcagataaatgatctaatggaggaaagacaaagttgcatatctgaaatagaaaaaaaagaaggggatatactggctgctcagatgtctgtgcaagaactccaagagagggatcaaatgctttctgcacagaatgagatgttgaagacggacaaggccaatctaaagaggagagtatcggaactggatgatatggtaaaaacaattcttggaacaccaagtacccggcatcccagtcttggaacaccaagtacccggcatccaagtcaacaaacatacacgaacaagaaaagtgcattcagattacatgatggtgattttaccagaagactggaacagtctgagaagcatctctctcgtgtcaatggtgaacttgctcaatacatcaaatcaggtggtggtcaggtgcgagacaaacgcttcagtcacgggtcagaactagaaaacaggaagcagaagaacttgagtctggattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

298

Amino Acids

33.85

Weight (kDa)

6.69

Isoelectric Point (pI)

53.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023057)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000953.1_g000001
rosa_roxburghii	Rroxscaffold_3G00240080
rosa_samantha	Rh7AG327300 Rh7CG344600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	164
AclWI	GGATC	2 cut(s)	159, 540
AcsI	RAATTY	1 cut(s)	405
AcuI	CTGAAG	2 cut(s)	91, 826
AfaI	GTAC	2 cut(s)	643, 673
AfiI	CCNNNNNNNGG	5 cut(s)	177, 340, 394, 529, 659
AflIII	ACRYGT	1 cut(s)	29
AgsI	TTSAA	3 cut(s)	36, 347, 565
AjnI	CCWGG	3 cut(s)	170, 339, 387
AjuI	GAANNNNNNNTTGG	2 cut(s)	327, 359
AloI	GAACNNNNNNTCC	2 cut(s)	76, 108
AluBI	AGCT	2 cut(s)	20, 75
AluI	AGCT	2 cut(s)	20, 75
Alw21I	GWGCWC	1 cut(s)	77
Alw26I	GTCTC	2 cut(s)	10, 825
AlwI	GGATC	2 cut(s)	159, 540
AoxI	GGCC	1 cut(s)	576
ApeKI	GCWGC	4 cut(s)	47, 203, 248, 497
ApoI	RAATTY	1 cut(s)	405
AsuC2I	CCSGG	2 cut(s)	646, 676
AsuHPI	GGTGA	3 cut(s)	93, 746, 800
AsuNHI	GCTAGC	1 cut(s)	244
BanII	GRGCYC	1 cut(s)	77
BarI	GAAGNNNNNNTAC	2 cut(s)	474, 506
BauI	CACGAG	1 cut(s)	777
BbsI	GAAGAC	3 cut(s)	387, 572, 754
Bbv12I	GWGCWC	1 cut(s)	77
BbvI	GCAGC	4 cut(s)	34, 190, 260, 484
BccI	CCATC	1 cut(s)	725
BceAI	ACGGC	1 cut(s)	60
BcgI	CGANNNNNNTGC	2 cut(s)	758, 792
BciT130I	CCWGG	3 cut(s)	172, 341, 389
BcnI	CCSGG	2 cut(s)	646, 676
BcoDI	GTCTC	2 cut(s)	10, 825
BfaI	CTAG	4 cut(s)	191, 240, 245, 860
BfmI	CTRYAG	1 cut(s)	165
BisI	GCNGC	4 cut(s)	48, 204, 249, 498
BlsI	GCNGC	4 cut(s)	49, 205, 250, 499
Bme1390I	CCNGG	5 cut(s)	172, 341, 389, 646, 676
BmiI	GGNNCC	1 cut(s)	94
BmrFI	CCNGG	5 cut(s)	172, 341, 389, 646, 676
BmrI	ACTGGG	1 cut(s)	648
BmsI	GCATC	3 cut(s)	658, 688, 778
BmtI	GCTAGC	1 cut(s)	248
BmuI	ACTGGG	1 cut(s)	648
BpiI	GAAGAC	3 cut(s)	387, 572, 754
BplI	GAGNNNNNCTC	2 cut(s)	59, 91
BpuEI	CTTGAG	1 cut(s)	436
BpuMI	CCSGG	2 cut(s)	646, 676
BsaI	GGTCTC	1 cut(s)	10
BsaJI	CCNNGG	1 cut(s)	42
BsaWI	WCCGGW	1 cut(s)	95
Bsc4I	CCNNNNNNNGG	5 cut(s)	177, 340, 394, 529, 659
Bse1I	ACTGG	6 cut(s)	204, 207, 498, 609, 654, 756
BseBI	CCWGG	3 cut(s)	172, 341, 389
BseDI	CCNNGG	1 cut(s)	42
BseGI	GGATG	3 cut(s)	613, 649, 679
BseLI	CCNNNNNNNGG	5 cut(s)	177, 340, 394, 529, 659
BseMII	CTCAG	3 cut(s)	21, 515, 753
BseNI	ACTGG	6 cut(s)	204, 207, 498, 609, 654, 756
BseRI	GAGGAG	2 cut(s)	85, 604
BseXI	GCAGC	4 cut(s)	34, 190, 260, 484
BsgI	GTGCAG	1 cut(s)	531
BshFI	GGCC	1 cut(s)	578
BsiHKAI	GWGCWC	1 cut(s)	77
BsiSI	CCGG	3 cut(s)	96, 646, 676
BslI	CCNNNNNNNGG	5 cut(s)	177, 340, 394, 529, 659
BsmAI	GTCTC	2 cut(s)	10, 825
BsmI	GAATGC	1 cut(s)	716
BsnI	GGCC	1 cut(s)	578
Bso31I	GGTCTC	1 cut(s)	10
Bsp1286I	GDGCHC	1 cut(s)	77
Bsp143I	GATC	3 cut(s)	151, 433, 532
BspANI	GGCC	1 cut(s)	578
BspCNI	CTCAG	3 cut(s)	20, 514, 754
BspLI	GGNNCC	1 cut(s)	94
BspOI	GCTAGC	1 cut(s)	248
BspPI	GGATC	2 cut(s)	159, 540
BspTNI	GGTCTC	1 cut(s)	10
BsrI	ACTGG	6 cut(s)	204, 207, 498, 609, 654, 756
BssECI	CCNNGG	1 cut(s)	42
BssMI	GATC	3 cut(s)	151, 433, 532
BssSI	CACGAG	1 cut(s)	777
Bst2BI	CACGAG	1 cut(s)	777
Bst2UI	CCWGG	3 cut(s)	172, 341, 389
Bst4CI	ACNGT	1 cut(s)	759
Bst6I	CTCTTC	1 cut(s)	354
BstAPI	GCANNNNNTGC	1 cut(s)	203
BstC8I	GCNNGC	1 cut(s)	246
BstDEI	CTNAG	3 cut(s)	7, 501, 762
BstDSI	CCRYGG	1 cut(s)	42
BstENI	CCTNNNNNAGG	1 cut(s)	392
BstF5I	GGATG	3 cut(s)	613, 649, 679
BstKTI	GATC	3 cut(s)	154, 436, 535
BstMAI	GTCTC	2 cut(s)	10, 825
BstMBI	GATC	3 cut(s)	151, 433, 532
BstMWI	GCNNNNNNNGC	1 cut(s)	203
BstNI	CCWGG	3 cut(s)	172, 341, 389
BstNSI	RCATGY	1 cut(s)	33
BstSCI	CCNGG	5 cut(s)	170, 339, 387, 644, 674
BstSFI	CTRYAG	1 cut(s)	165
BstV1I	GCAGC	4 cut(s)	34, 190, 260, 484
BstV2I	GAAGAC	3 cut(s)	387, 572, 754
BstXI	CCANNNNNNTGG	1 cut(s)	751
BsuRI	GGCC	1 cut(s)	578
BtgI	CCRYGG	1 cut(s)	42
BtsCI	GGATG	3 cut(s)	613, 649, 679
BtsIMutI	CAGTG	1 cut(s)	197
Cac8I	GCNNGC	1 cut(s)	246
CsiI	ACCWGGT	1 cut(s)	339
Csp6I	GTAC	2 cut(s)	642, 672
CspCI	CAANNNNNGTGG	2 cut(s)	796, 831
CviAII	CATG	5 cut(s)	30, 262, 269, 307, 728
CviQI	GTAC	2 cut(s)	642, 672
DdeI	CTNAG	3 cut(s)	7, 501, 762
DpnI	GATC	3 cut(s)	153, 435, 534
DpnII	GATC	3 cut(s)	151, 433, 532
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
Ecl136II	GAGCTC	1 cut(s)	75
Eco24I	GRGCYC	1 cut(s)	77
Eco31I	GGTCTC	1 cut(s)	10
Eco53kI	GAGCTC	1 cut(s)	75
Eco57I	CTGAAG	2 cut(s)	91, 826
EcoICRI	GAGCTC	1 cut(s)	75
EcoNI	CCTNNNNNAGG	1 cut(s)	392
EcoRII	CCWGG	3 cut(s)	170, 339, 387
EcoT38I	GRGCYC	1 cut(s)	77
FaeI	CATG	5 cut(s)	33, 265, 272, 310, 731
FatI	CATG	5 cut(s)	29, 261, 268, 306, 727
FblI	GTMKAC	1 cut(s)	164
Fnu4HI	GCNGC	4 cut(s)	48, 204, 249, 498
FokI	GGATG	3 cut(s)	620, 636, 666
FriOI	GRGCYC	1 cut(s)	77
Fsp4HI	GCNGC	4 cut(s)	48, 204, 249, 498
FspBI	CTAG	4 cut(s)	191, 240, 245, 860
GluI	GCNGC	4 cut(s)	48, 204, 249, 498
HaeIII	GGCC	1 cut(s)	578
HapII	CCGG	3 cut(s)	96, 646, 676
Hin1II	CATG	5 cut(s)	33, 265, 272, 310, 731
HincII	GTYRAC	1 cut(s)	689
HindII	GTYRAC	1 cut(s)	689
HinfI	GANTC	1 cut(s)	886
HpaII	CCGG	3 cut(s)	96, 646, 676
HphI	GGTGA	3 cut(s)	93, 746, 800
Hpy166II	GTNNAC	4 cut(s)	101, 165, 689, 791
Hpy188I	TCNGA	8 cut(s)	10, 180, 466, 504, 601, 722, 763, 856
Hpy188III	TCNNGA	4 cut(s)	82, 155, 281, 890
Hpy8I	GTNNAC	4 cut(s)	101, 165, 689, 791
HpyAV	CCTTC	3 cut(s)	115, 142, 476
HpyCH4III	ACNGT	1 cut(s)	759
HpyCH4V	TGCA	7 cut(s)	50, 114, 320, 459, 514, 548, 716
HpyF10VI	GCNNNNNNNGC	1 cut(s)	203
HpyF3I	CTNAG	3 cut(s)	7, 501, 762
Hsp92II	CATG	5 cut(s)	33, 265, 272, 310, 731
Kzo9I	GATC	3 cut(s)	151, 433, 532
LmnI	GCTCC	2 cut(s)	72, 397
Lsp1109I	GCAGC	4 cut(s)	34, 190, 260, 484
LweI	GCATC	3 cut(s)	658, 688, 778
MabI	ACCWGGT	1 cut(s)	339
MaeI	CTAG	4 cut(s)	191, 240, 245, 860
MaeIII	GTNAC	1 cut(s)	845
MalI	GATC	3 cut(s)	153, 435, 534
MboI	GATC	3 cut(s)	151, 433, 532
MboII	GAAGA	5 cut(s)	371, 392, 577, 759, 889
MhlI	GDGCHC	1 cut(s)	77
MluCI	AATT	5 cut(s)	158, 299, 350, 405, 624
MlyI	GAGTC	1 cut(s)	895
MnlI	CCTC	8 cut(s)	63, 178, 187, 214, 355, 436, 522, 582
MslI	CAYNNNNRTG	1 cut(s)	732
MspI	CCGG	3 cut(s)	96, 646, 676
MspR9I	CCNGG	5 cut(s)	172, 341, 389, 646, 676
Mva1269I	GAATGC	1 cut(s)	716
MvaI	CCWGG	3 cut(s)	172, 341, 389
MwoI	GCNNNNNNNGC	1 cut(s)	203
NciI	CCSGG	2 cut(s)	646, 676
NdeII	GATC	3 cut(s)	151, 433, 532
NheI	GCTAGC	1 cut(s)	244
NlaIII	CATG	5 cut(s)	33, 265, 272, 310, 731
NlaIV	GGNNCC	1 cut(s)	94
NmuCI	GTSAC	1 cut(s)	845
NspI	RCATGY	1 cut(s)	33
PciI	ACATGT	1 cut(s)	29
PctI	GAATGC	1 cut(s)	716
PkrI	GCNGC	4 cut(s)	49, 205, 250, 499
PleI	GAGTC	1 cut(s)	894
PpsI	GAGTC	1 cut(s)	894
PscI	ACATGT	1 cut(s)	29
Psp124BI	GAGCTC	1 cut(s)	77
Psp6I	CCWGG	3 cut(s)	170, 339, 387
PspGI	CCWGG	3 cut(s)	170, 339, 387
PspN4I	GGNNCC	1 cut(s)	94
PsrI	GAACNNNNNNTAC	4 cut(s)	625, 655, 657, 687
RsaI	GTAC	2 cut(s)	643, 673
RsaNI	GTAC	2 cut(s)	642, 672
RseI	CAYNNNNRTG	1 cut(s)	732
SacI	GAGCTC	1 cut(s)	77
SatI	GCNGC	4 cut(s)	48, 204, 249, 498
Sau3AI	GATC	3 cut(s)	151, 433, 532
SchI	GAGTC	1 cut(s)	895
ScrFI	CCNGG	5 cut(s)	172, 341, 389, 646, 676
SduI	GDGCHC	1 cut(s)	77
SetI	ASST	7 cut(s)	22, 77, 113, 225, 345, 817, 828
SexAI	ACCWGGT	1 cut(s)	339
SfaNI	GCATC	3 cut(s)	658, 688, 778
SfcI	CTRYAG	1 cut(s)	165
SmiMI	CAYNNNNRTG	1 cut(s)	732
SmlI	CTYRAG	2 cut(s)	415, 883
SmoI	CTYRAG	2 cut(s)	415, 883
Sse9I	AATT	5 cut(s)	158, 299, 350, 405, 624
SspMI	CTAG	4 cut(s)	191, 240, 245, 860
SstI	GAGCTC	1 cut(s)	77
StyD4I	CCNGG	5 cut(s)	170, 339, 387, 644, 674
TaaI	ACNGT	1 cut(s)	759
TaqI	TCGA	1 cut(s)	280
TasI	AATT	5 cut(s)	158, 299, 350, 405, 624
TscAI	CASTG	1 cut(s)	204
TseFI	GTSAC	1 cut(s)	845
TseI	GCWGC	4 cut(s)	47, 203, 248, 497
Tsp45I	GTSAC	1 cut(s)	845
TspDTI	ATGAA	1 cut(s)	152
TspGWI	ACGGA	2 cut(s)	158, 584
TspRI	CASTG	1 cut(s)	204
XagI	CCTNNNNNAGG	1 cut(s)	392
XapI	RAATTY	1 cut(s)	405
XceI	RCATGY	1 cut(s)	33
XmiI	GTMKAC	1 cut(s)	164
XspI	CTAG	4 cut(s)	191, 240, 245, 860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.