Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001004.1

Orthogroup ID

OG0031111

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 960

Gene Structure 959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 397 bp

atggacaagtccagcgctctcgaatacatcaaccagatgttccccacagaggcatcgttatccggcgtcgagccgctaatgcagaagattcacagtgaaattcggcgcgttgatgctggaattctagctgcggttcgccaacagagcaattcagggaccaaagccaaggaagatcttgctgctgccacgcgagccgtggaggaactcatgtataagatccgggaaatcaaaacaaaggctgagcagagtgagacaatggttcaggagatatgtcgtgacattaagaagttggattttgcaaagaagcatataacaaccaccattactgctcttcatcgtctgaccatgctcgtctctgctgttgaacagcttcaagtgatggcttccaaacgacaat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000938 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005794 GO:0006810 GO:0006890 GO:0006950 GO:0006970 GO:0007009 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010256 GO:0010286 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016482 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032991 GO:0042147 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0071840 GO:0097708 GO:0098588 GO:0098791 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps53_N

Protein Analysis

132

Amino Acids

14.85

Weight (kDa)

9.07

Isoelectric Point (pI)

51.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Vps53_N	PF04100	3 - 132	6.9e-50	Vps53, N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0031111)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001004.1_g000001
rosa_samantha	Rh2AG510500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	108, 190
AciI	CCGC	2 cut(s)	74, 131
AclWI	GGATC	1 cut(s)	211
AcsI	RAATTY	2 cut(s)	99, 120
AcyI	GRCGYC	1 cut(s)	66
AfeI	AGCGCT	1 cut(s)	16
AfiI	CCNNNNNNNGG	1 cut(s)	49
AgsI	TTSAA	2 cut(s)	365, 374
AluBI	AGCT	2 cut(s)	128, 370
AluI	AGCT	2 cut(s)	128, 370
Alw26I	GTCTC	2 cut(s)	245, 358
AlwI	GGATC	1 cut(s)	211
Aor51HI	AGCGCT	1 cut(s)	16
ApeKI	GCWGC	3 cut(s)	128, 179, 182
ApoI	RAATTY	2 cut(s)	99, 120
Asp700I	GAANNNNTTC	1 cut(s)	369
AspLEI	GCGC	2 cut(s)	17, 108
AspS9I	GGNCC	1 cut(s)	156
AsuC2I	CCSGG	1 cut(s)	221
AvaII	GGWCC	1 cut(s)	156
BbvI	GCAGC	3 cut(s)	115, 166, 169
BccI	CCATC	1 cut(s)	373
BceAI	ACGGC	1 cut(s)	179
BcnI	CCSGG	1 cut(s)	221
BcoDI	GTCTC	2 cut(s)	245, 358
BfaI	CTAG	1 cut(s)	125
BfoI	RGCGCY	1 cut(s)	18
BglII	AGATCT	1 cut(s)	172
BisI	GCNGC	4 cut(s)	74, 129, 180, 183
BlpI	GCTNAGC	1 cut(s)	240
BlsI	GCNGC	4 cut(s)	75, 130, 181, 184
Bme1390I	CCNGG	1 cut(s)	221
Bme18I	GGWCC	1 cut(s)	156
BmgT120I	GGNCC	1 cut(s)	156
BmiI	GGNNCC	1 cut(s)	157
BmrFI	CCNGG	1 cut(s)	221
BmsI	GCATC	2 cut(s)	62, 103
Bpu1102I	GCTNAGC	1 cut(s)	240
BpuMI	CCSGG	1 cut(s)	221
BsaHI	GRCGYC	1 cut(s)	66
BsaJI	CCNNGG	2 cut(s)	165, 195
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
BseDI	CCNNGG	2 cut(s)	165, 195
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseMII	CTCAG	1 cut(s)	231
BseXI	GCAGC	3 cut(s)	115, 166, 169
Bsh1236I	CGCG	2 cut(s)	108, 190
BsiSI	CCGG	2 cut(s)	63, 220
BslFI	GGGAC	1 cut(s)	169
BslI	CCNNNNNNNGG	1 cut(s)	49
BsmAI	GTCTC	2 cut(s)	245, 358
BsmBI	CGTCTC	1 cut(s)	358
BsmFI	GGGAC	1 cut(s)	169
Bsp143I	GATC	2 cut(s)	172, 216
Bsp1720I	GCTNAGC	1 cut(s)	240
BspACI	CCGC	2 cut(s)	74, 131
BspCNI	CTCAG	1 cut(s)	232
BspFNI	CGCG	2 cut(s)	108, 190
BspLI	GGNNCC	1 cut(s)	157
BspPI	GGATC	1 cut(s)	211
BspQI	GCTCTTC	1 cut(s)	336
BssECI	CCNNGG	2 cut(s)	165, 195
BssMI	GATC	2 cut(s)	172, 216
BssNI	GRCGYC	1 cut(s)	66
BssT1I	CCWWGG	1 cut(s)	165
Bst4CI	ACNGT	1 cut(s)	95
Bst6I	CTCTTC	1 cut(s)	336
BstACI	GRCGYC	1 cut(s)	66
BstC8I	GCNNGC	1 cut(s)	192
BstDEI	CTNAG	1 cut(s)	240
BstDSI	CCRYGG	1 cut(s)	195
BstFNI	CGCG	2 cut(s)	108, 190
BstH2I	RGCGCY	1 cut(s)	18
BstHHI	GCGC	2 cut(s)	17, 108
BstKTI	GATC	2 cut(s)	175, 219
BstMAI	GTCTC	2 cut(s)	245, 358
BstMBI	GATC	2 cut(s)	172, 216
BstMWI	GCNNNNNNNGC	3 cut(s)	79, 144, 191
BstSCI	CCNGG	1 cut(s)	219
BstUI	CGCG	2 cut(s)	108, 190
BstV1I	GCAGC	3 cut(s)	115, 166, 169
BstX2I	RGATCY	2 cut(s)	172, 216
BstYI	RGATCY	2 cut(s)	172, 216
BtgI	CCRYGG	1 cut(s)	195
BtsIMutI	CAGTG	1 cut(s)	100
Cac8I	GCNNGC	1 cut(s)	192
CfoI	GCGC	2 cut(s)	17, 108
Cfr13I	GGNCC	1 cut(s)	156
CseI	GACGC	1 cut(s)	55
CviAII	CATG	2 cut(s)	208, 346
CviJI	RGCY	7 cut(s)	73, 128, 164, 194, 239, 370, 383
CviKI_1	RGCY	7 cut(s)	73, 128, 164, 194, 239, 370, 383
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	2 cut(s)	174, 218
DpnII	GATC	2 cut(s)	172, 216
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
Eco130I	CCWWGG	1 cut(s)	165
Eco47I	GGWCC	1 cut(s)	156
Eco47III	AGCGCT	1 cut(s)	16
EcoRI	GAATTC	1 cut(s)	120
EcoT14I	CCWWGG	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	165
Esp3I	CGTCTC	1 cut(s)	358
FaeI	CATG	2 cut(s)	211, 349
FaiI	YATR	6 cut(s)	209, 213, 271, 309, 311, 347
FaqI	GGGAC	1 cut(s)	169
FatI	CATG	2 cut(s)	207, 345
Fnu4HI	GCNGC	4 cut(s)	74, 129, 180, 183
Fsp4HI	GCNGC	4 cut(s)	74, 129, 180, 183
FspBI	CTAG	1 cut(s)	125
GlaI	GCGC	2 cut(s)	16, 107
GluI	GCNGC	4 cut(s)	74, 129, 180, 183
HaeII	RGCGCY	1 cut(s)	18
HapII	CCGG	2 cut(s)	63, 220
HgaI	GACGC	1 cut(s)	55
HhaI	GCGC	2 cut(s)	17, 108
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	2 cut(s)	211, 349
Hin6I	GCGC	2 cut(s)	15, 106
HinP1I	GCGC	2 cut(s)	15, 106
HinfI	GANTC	1 cut(s)	88
HpaII	CCGG	2 cut(s)	63, 220
Hpy188I	TCNGA	1 cut(s)	342
Hpy188III	TCNNGA	3 cut(s)	20, 263, 275
Hpy99I	CGWCG	1 cut(s)	71
HpyCH4III	ACNGT	1 cut(s)	95
HpyCH4V	TGCA	2 cut(s)	82, 299
HpyF10VI	GCNNNNNNNGC	3 cut(s)	79, 144, 191
HpyF3I	CTNAG	1 cut(s)	240
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	2 cut(s)	211, 349
HspAI	GCGC	2 cut(s)	15, 106
Kzo9I	GATC	2 cut(s)	172, 216
LguI	GCTCTTC	1 cut(s)	336
LpnPI	CCDG	7 cut(s)	25, 47, 76, 102, 138, 233, 248
Lsp1109I	GCAGC	3 cut(s)	115, 166, 169
LweI	GCATC	2 cut(s)	62, 103
MaeI	CTAG	1 cut(s)	125
MaeIII	GTNAC	1 cut(s)	275
MalI	GATC	2 cut(s)	174, 218
MboI	GATC	2 cut(s)	172, 216
MboII	GAAGA	3 cut(s)	97, 182, 323
MflI	RGATCY	2 cut(s)	172, 216
MluCI	AATT	3 cut(s)	99, 120, 148
MmeI	TCCRAC	1 cut(s)	270
MnlI	CCTC	2 cut(s)	43, 193
MroXI	GAANNNNTTC	1 cut(s)	369
MseI	TTAA	1 cut(s)	282
MspI	CCGG	2 cut(s)	63, 220
MspR9I	CCNGG	1 cut(s)	221
MvnI	CGCG	2 cut(s)	108, 190
MwoI	GCNNNNNNNGC	3 cut(s)	79, 144, 191
NciI	CCSGG	1 cut(s)	221
NdeII	GATC	2 cut(s)	172, 216
NlaIII	CATG	2 cut(s)	211, 349
NlaIV	GGNNCC	1 cut(s)	157
NmuCI	GTSAC	1 cut(s)	275
PciSI	GCTCTTC	1 cut(s)	336
PdmI	GAANNNNTTC	1 cut(s)	369
PfeI	GAWTC	1 cut(s)	88
PfoI	TCCNGGA	1 cut(s)	219
PkrI	GCNGC	4 cut(s)	75, 130, 181, 184
PspN4I	GGNNCC	1 cut(s)	157
PspPI	GGNCC	1 cut(s)	156
PsuI	RGATCY	2 cut(s)	172, 216
SapI	GCTCTTC	1 cut(s)	336
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	4 cut(s)	74, 129, 180, 183
Sau3AI	GATC	2 cut(s)	172, 216
Sau96I	GGNCC	1 cut(s)	156
ScrFI	CCNGG	1 cut(s)	221
SetI	ASST	2 cut(s)	130, 372
SfaNI	GCATC	2 cut(s)	62, 103
SinI	GGWCC	1 cut(s)	156
Sse9I	AATT	3 cut(s)	99, 120, 148
SsiI	CCGC	2 cut(s)	74, 131
SspMI	CTAG	1 cut(s)	125
StyD4I	CCNGG	1 cut(s)	219
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	1 cut(s)	95
TaqI	TCGA	2 cut(s)	21, 69
TasI	AATT	3 cut(s)	99, 120, 148
TauI	GCSGC	1 cut(s)	76
TfiI	GAWTC	1 cut(s)	88
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TscAI	CASTG	1 cut(s)	100
TseFI	GTSAC	1 cut(s)	275
TseI	GCWGC	3 cut(s)	128, 179, 182
Tsp45I	GTSAC	1 cut(s)	275
TspDTI	ATGAA	1 cut(s)	323
TspRI	CASTG	1 cut(s)	100
VpaK11BI	GGWCC	1 cut(s)	156
XapI	RAATTY	2 cut(s)	99, 120
XcmI	CCANNNNNNNNNTGG	1 cut(s)	193
XmnI	GAANNNNTTC	1 cut(s)	369
XspI	CTAG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.