Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0031111

Physical Location & Seq

Genomic Coordinates Forward (+)

73625461 .. 73634478

Gene Structure 9018 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG510500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGACAAGTCCAGCGCTCTCGAATACATCAACCAGATGTTCCCCACAGAGGCGTCGTTATCCGGCGTCGAGCCGCTAATGCAGAAGATTCACAGTGAAATTCGGCGCGTTGATGCTGGAATTCTAGCTGCGGTTCGCCAACAGAGCAATTCAGGGACCAAAGCCAAGGAGGATCTTGCTGCTGCCACGCGAGCCGTGGAGGAACTCATGTATAAGATCCGGGAAATCAAAACAAAGGCTGAGCAGAGTGAGACAATGGTTCAGGAGATATGTCGTGACATTAAGAAGTTGGATTTTGCGAAGAAGCATATAACAACCACCATTACTGCTCTTCATCGTCTGACCATGCTCGTCTCTGCTGTTGAACAGCTTCAAGTGATGGCTTCCAAACGACAATATAAAGAGGCGGCTGCACAGTTGGAGGCTGTGAACCAATTATGTAGCCATTTTGAAGCCTATAGGGATGTTCCAAAAATCACAGAGCTCAGGGAGAAATTTAAGAATATCAAACAAATATTAAAGTCACACGTGTTTTCCGATTTCTCAAGGAAGCAGCTAGAAGATATCCTTAATAATCAGAAAGAAAAGCCAGATGTTGGGACATTGCTGATGACGTCACGTGCTGCAAGCTATGCGAAATTTGTAAGCCGTGAGATGAGCAAAGCTGAAGCACTTCTAAAGGTCATACTGTCCCCAATTGATTCTGTCGCAGATACATATCGTGCATTGCTACCAGAGGGAACACCTATGGAGTTTCAGCGAATTCTGGAGCTCAAGGGTCTTAAAAAGGCAGATCAGCAGAGTATACTTGAAGACTTCAACAAGCATGGGCCAGGAATTACTCAACCTTCTACCCCACCACCACCAGTTGCCACACCTGTTCCAACTGCCCCGACAGTCTCTCTGATACAAATTCCCACTTCAGGTGGATTCCTTGCACCCAGAGAAGATGTTCTAACCAGAGCAGCTGCACTTGGACGTGGTGCAGCCACAACAGGGTTCAAGAGGTTTCTAGCTTTAACAGAAGCTGCAAAGGACCGGAAAGATGGGCCTTTCAGGAAGCTCTTCAATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000938 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005794 GO:0006810 GO:0006890 GO:0006950 GO:0006970 GO:0007009 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010256 GO:0010286 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016482 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032991 GO:0042147 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0071840 GO:0097708 GO:0098588 GO:0098791 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps53_N

Protein Analysis

358

Amino Acids

39.78

Weight (kDa)

9.39

Isoelectric Point (pI)

40.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Vps53_N	PF04100	3 - 183	5e-70	Vps53, N-terminal
VPS53_C	PF16854	186 - 261	4e-08	Vacuolar protein sorting-associated protein 53 C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031111)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001004.1_g000001
rosa_samantha	Rh2AG510500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	617
AccB7I	CCANNNNNTGG	1 cut(s)	596
AccI	GTMKAC	1 cut(s)	805
AccII	CGCG	2 cut(s)	108, 190
AciI	CCGC	3 cut(s)	74, 131, 407
AclWI	GGATC	2 cut(s)	180, 211
AcsI	RAATTY	6 cut(s)	99, 120, 494, 638, 762, 912
AcuI	CTGAAG	2 cut(s)	687, 906
AcvI	CACGTG	2 cut(s)	529, 620
AcyI	GRCGYC	3 cut(s)	53, 66, 614
AfeI	AGCGCT	1 cut(s)	16
AfiI	CCNNNNNNNGG	4 cut(s)	49, 596, 923, 996
AflIII	ACRYGT	2 cut(s)	526, 528
AgsI	TTSAA	7 cut(s)	365, 374, 452, 812, 820, 1003, 1069
AjiI	CACGTC	1 cut(s)	980
AjnI	CCWGG	1 cut(s)	832
Alw21I	GWGCWC	2 cut(s)	486, 774
Alw26I	GTCTC	3 cut(s)	245, 358, 904
AlwI	GGATC	2 cut(s)	180, 211
AlwNI	CAGNNNCTG	1 cut(s)	1028
Aor51HI	AGCGCT	1 cut(s)	16
AoxI	GGCC	2 cut(s)	830, 1049
ApoI	RAATTY	6 cut(s)	99, 120, 494, 638, 762, 912
Asp700I	GAANNNNTTC	4 cut(s)	369, 672, 951, 1064
AspLEI	GCGC	2 cut(s)	17, 108
AspS9I	GGNCC	4 cut(s)	156, 830, 1036, 1049
AsuC2I	CCSGG	1 cut(s)	221
AvaII	GGWCC	2 cut(s)	156, 1036
BanII	GRGCYC	2 cut(s)	486, 774
BbrPI	CACGTG	2 cut(s)	529, 620
BbsI	GAAGAC	1 cut(s)	819
Bbv12I	GWGCWC	2 cut(s)	486, 774
BccI	CCATC	2 cut(s)	373, 1040
BceAI	ACGGC	2 cut(s)	179, 633
BciT130I	CCWGG	1 cut(s)	834
BcnI	CCSGG	1 cut(s)	221
BcoDI	GTCTC	3 cut(s)	245, 358, 904
BfaI	CTAG	3 cut(s)	125, 557, 1013
BfmI	CTRYAG	1 cut(s)	457
BfoI	RGCGCY	1 cut(s)	18
BlpI	GCTNAGC	1 cut(s)	240
Bme1390I	CCNGG	2 cut(s)	221, 834
Bme18I	GGWCC	2 cut(s)	156, 1036
BmgBI	CACGTC	1 cut(s)	980
BmgT120I	GGNCC	4 cut(s)	156, 830, 1036, 1049
BmiI	GGNNCC	1 cut(s)	157
BmrFI	CCNGG	2 cut(s)	221, 834
BmsI	GCATC	1 cut(s)	103
BpiI	GAAGAC	1 cut(s)	819
BpmI	CTGGAG	1 cut(s)	788
Bpu10I	CCTNAGC	1 cut(s)	485
Bpu1102I	GCTNAGC	1 cut(s)	240
BpuEI	CTTGAG	2 cut(s)	529, 758
BpuMI	CCSGG	1 cut(s)	221
BsaAI	YACGTR	2 cut(s)	529, 620
BsaBI	GATNNNNATC	1 cut(s)	717
BsaHI	GRCGYC	3 cut(s)	53, 66, 614
BsaJI	CCNNGG	2 cut(s)	165, 195
BsaWI	WCCGGW	1 cut(s)	1038
Bsc4I	CCNNNNNNNGG	4 cut(s)	49, 596, 923, 996
Bse1I	ACTGG	1 cut(s)	866
Bse3DI	GCAATG	2 cut(s)	602, 725
Bse8I	GATNNNNATC	1 cut(s)	717
BseBI	CCWGG	1 cut(s)	834
BseDI	CCNNGG	2 cut(s)	165, 195
BseGI	GGATG	1 cut(s)	469
BseJI	GATNNNNATC	1 cut(s)	717
BseLI	CCNNNNNNNGG	4 cut(s)	49, 596, 923, 996
BseMI	GCAATG	2 cut(s)	602, 725
BseMII	CTCAG	2 cut(s)	231, 499
BseNI	ACTGG	1 cut(s)	866
BsgI	GTGCAG	3 cut(s)	396, 954, 1005
Bsh1236I	CGCG	2 cut(s)	108, 190
BshFI	GGCC	2 cut(s)	832, 1051
BsiHKAI	GWGCWC	2 cut(s)	486, 774
BsiSI	CCGG	3 cut(s)	63, 220, 1039
BslFI	GGGAC	3 cut(s)	169, 613, 676
BslI	CCNNNNNNNGG	4 cut(s)	49, 596, 923, 996
BsmAI	GTCTC	3 cut(s)	245, 358, 904
BsmBI	CGTCTC	1 cut(s)	358
BsmFI	GGGAC	3 cut(s)	169, 613, 676
BsnI	GGCC	2 cut(s)	832, 1051
Bsp1286I	GDGCHC	2 cut(s)	486, 774
Bsp143I	GATC	3 cut(s)	172, 216, 793
Bsp1720I	GCTNAGC	1 cut(s)	240
BspACI	CCGC	3 cut(s)	74, 131, 407
BspANI	GGCC	2 cut(s)	832, 1051
BspCNI	CTCAG	2 cut(s)	232, 498
BspFNI	CGCG	2 cut(s)	108, 190
BspLI	GGNNCC	1 cut(s)	157
BspPI	GGATC	2 cut(s)	180, 211
BspQI	GCTCTTC	2 cut(s)	336, 1070
BsrDI	GCAATG	2 cut(s)	602, 725
BsrI	ACTGG	1 cut(s)	866
BssECI	CCNNGG	2 cut(s)	165, 195
BssMI	GATC	3 cut(s)	172, 216, 793
BssNAI	GTATAC	1 cut(s)	806
BssNI	GRCGYC	3 cut(s)	53, 66, 614
BssT1I	CCWWGG	1 cut(s)	165
Bst1107I	GTATAC	1 cut(s)	806
Bst2UI	CCWGG	1 cut(s)	834
Bst4CI	ACNGT	4 cut(s)	95, 417, 690, 898
Bst6I	CTCTTC	2 cut(s)	336, 1070
BstACI	GRCGYC	3 cut(s)	53, 66, 614
BstAPI	GCANNNNNTGC	1 cut(s)	632
BstBAI	YACGTR	2 cut(s)	529, 620
BstC8I	GCNNGC	2 cut(s)	192, 628
BstDEI	CTNAG	2 cut(s)	240, 485
BstDSI	CCRYGG	1 cut(s)	195
BstF5I	GGATG	1 cut(s)	469
BstFNI	CGCG	2 cut(s)	108, 190
BstH2I	RGCGCY	1 cut(s)	18
BstHHI	GCGC	2 cut(s)	17, 108
BstKTI	GATC	3 cut(s)	175, 219, 796
BstMAI	GTCTC	3 cut(s)	245, 358, 904
BstMBI	GATC	3 cut(s)	172, 216, 793
BstMWI	GCNNNNNNNGC	4 cut(s)	79, 144, 191, 632
BstNI	CCWGG	1 cut(s)	834
BstSCI	CCNGG	2 cut(s)	219, 832
BstSFI	CTRYAG	1 cut(s)	457
BstUI	CGCG	2 cut(s)	108, 190
BstV2I	GAAGAC	1 cut(s)	819
BstX2I	RGATCY	2 cut(s)	172, 216
BstYI	RGATCY	2 cut(s)	172, 216
BstZ17I	GTATAC	1 cut(s)	806
BsuRI	GGCC	2 cut(s)	832, 1051
BtgI	CCRYGG	1 cut(s)	195
BtrI	CACGTC	1 cut(s)	980
BtsCI	GGATG	1 cut(s)	469
BtsIMutI	CAGTG	1 cut(s)	100
Cac8I	GCNNGC	2 cut(s)	192, 628
CaiI	CAGNNNCTG	1 cut(s)	1028
CfoI	GCGC	2 cut(s)	17, 108
Cfr13I	GGNCC	4 cut(s)	156, 830, 1036, 1049
CseI	GACGC	2 cut(s)	42, 55
CviAII	CATG	3 cut(s)	208, 346, 827
DdeI	CTNAG	2 cut(s)	240, 485
DpnI	GATC	3 cut(s)	174, 218, 795
DpnII	GATC	3 cut(s)	172, 216, 793
Eam1104I	CTCTTC	2 cut(s)	336, 1070
EarI	CTCTTC	2 cut(s)	336, 1070
Ecl136II	GAGCTC	2 cut(s)	484, 772
Eco130I	CCWWGG	1 cut(s)	165
Eco24I	GRGCYC	2 cut(s)	486, 774
Eco32I	GATATC	1 cut(s)	565
Eco47I	GGWCC	2 cut(s)	156, 1036
Eco47III	AGCGCT	1 cut(s)	16
Eco53kI	GAGCTC	2 cut(s)	484, 772
Eco57I	CTGAAG	2 cut(s)	687, 906
Eco72I	CACGTG	2 cut(s)	529, 620
EcoICRI	GAGCTC	2 cut(s)	484, 772
EcoRI	GAATTC	2 cut(s)	120, 762
EcoRII	CCWGG	1 cut(s)	832
EcoRV	GATATC	1 cut(s)	565
EcoT14I	CCWWGG	1 cut(s)	165
EcoT38I	GRGCYC	2 cut(s)	486, 774
ErhI	CCWWGG	1 cut(s)	165
Esp3I	CGTCTC	1 cut(s)	358
FaeI	CATG	3 cut(s)	211, 349, 830
FalI	AAGNNNNNCTT	2 cut(s)	552, 584
FaqI	GGGAC	3 cut(s)	169, 613, 676
FatI	CATG	3 cut(s)	207, 345, 826
FblI	GTMKAC	1 cut(s)	805
FokI	GGATG	1 cut(s)	476
FriOI	GRGCYC	2 cut(s)	486, 774
FspBI	CTAG	3 cut(s)	125, 557, 1013
GlaI	GCGC	2 cut(s)	16, 107
GsuI	CTGGAG	1 cut(s)	788
HaeII	RGCGCY	1 cut(s)	18
HaeIII	GGCC	2 cut(s)	832, 1051
HapII	CCGG	3 cut(s)	63, 220, 1039
HgaI	GACGC	2 cut(s)	42, 55
HhaI	GCGC	2 cut(s)	17, 108
Hin1I	GRCGYC	3 cut(s)	53, 66, 614
Hin1II	CATG	3 cut(s)	211, 349, 830
Hin6I	GCGC	2 cut(s)	15, 106
HinP1I	GCGC	2 cut(s)	15, 106
HinfI	GANTC	3 cut(s)	88, 701, 930
HpaII	CCGG	3 cut(s)	63, 220, 1039
Hpy166II	GTNNAC	2 cut(s)	430, 806
Hpy188I	TCNGA	4 cut(s)	342, 538, 579, 906
Hpy188III	TCNNGA	6 cut(s)	20, 263, 275, 767, 1003, 1057
Hpy8I	GTNNAC	2 cut(s)	430, 806
Hpy99I	CGWCG	2 cut(s)	58, 71
HpyAV	CCTTC	1 cut(s)	858
HpyCH4III	ACNGT	4 cut(s)	95, 417, 690, 898
HpyCH4IV	ACGT	4 cut(s)	528, 614, 619, 979
HpyCH4V	TGCA	8 cut(s)	82, 413, 626, 725, 938, 971, 986, 1031
HpyF10VI	GCNNNNNNNGC	4 cut(s)	79, 144, 191, 632
HpyF3I	CTNAG	2 cut(s)	240, 485
HpySE526I	ACGT	4 cut(s)	528, 614, 619, 979
Hsp92I	GRCGYC	3 cut(s)	53, 66, 614
Hsp92II	CATG	3 cut(s)	211, 349, 830
HspAI	GCGC	2 cut(s)	15, 106
Kzo9I	GATC	3 cut(s)	172, 216, 793
LguI	GCTCTTC	2 cut(s)	336, 1070
LmnI	GCTCC	1 cut(s)	769
LweI	GCATC	1 cut(s)	103
MaeI	CTAG	3 cut(s)	125, 557, 1013
MaeII	ACGT	4 cut(s)	528, 614, 619, 979
MaeIII	GTNAC	3 cut(s)	275, 522, 615
MalI	GATC	3 cut(s)	174, 218, 795
MboI	GATC	3 cut(s)	172, 216, 793
MboII	GAAGA	7 cut(s)	97, 313, 323, 572, 824, 959, 1057
MfeI	CAATTG	1 cut(s)	696
MflI	RGATCY	2 cut(s)	172, 216
MhlI	GDGCHC	2 cut(s)	486, 774
MmeI	TCCRAC	3 cut(s)	270, 399, 908
MnlI	CCTC	7 cut(s)	43, 163, 193, 397, 415, 730, 999
MroXI	GAANNNNTTC	4 cut(s)	369, 672, 951, 1064
MseI	TTAA	6 cut(s)	282, 498, 518, 570, 783, 1019
MspA1I	CMGCKG	1 cut(s)	968
MspI	CCGG	3 cut(s)	63, 220, 1039
MspR9I	CCNGG	2 cut(s)	221, 834
MunI	CAATTG	1 cut(s)	696
MvaI	CCWGG	1 cut(s)	834
MvnI	CGCG	2 cut(s)	108, 190
MwoI	GCNNNNNNNGC	4 cut(s)	79, 144, 191, 632
NciI	CCSGG	1 cut(s)	221
NdeII	GATC	3 cut(s)	172, 216, 793
NlaIII	CATG	3 cut(s)	211, 349, 830
NlaIV	GGNNCC	1 cut(s)	157
NmuCI	GTSAC	3 cut(s)	275, 522, 615
PciSI	GCTCTTC	2 cut(s)	336, 1070
PcsI	WCGNNNNNNNCGW	1 cut(s)	534
PdmI	GAANNNNTTC	4 cut(s)	369, 672, 951, 1064
PfeI	GAWTC	3 cut(s)	88, 701, 930
PflMI	CCANNNNNTGG	1 cut(s)	596
PfoI	TCCNGGA	1 cut(s)	219
PmaCI	CACGTG	2 cut(s)	529, 620
PmlI	CACGTG	2 cut(s)	529, 620
Ppu21I	YACGTR	2 cut(s)	529, 620
Psp124BI	GAGCTC	2 cut(s)	486, 774
Psp6I	CCWGG	1 cut(s)	832
PspCI	CACGTG	2 cut(s)	529, 620
PspGI	CCWGG	1 cut(s)	832
PspN4I	GGNNCC	1 cut(s)	157
PspPI	GGNCC	4 cut(s)	156, 830, 1036, 1049
PstNI	CAGNNNCTG	1 cut(s)	1028
PsuI	RGATCY	2 cut(s)	172, 216
PvuII	CAGCTG	1 cut(s)	968
SacI	GAGCTC	2 cut(s)	486, 774
SapI	GCTCTTC	2 cut(s)	336, 1070
SaqAI	TTAA	6 cut(s)	282, 498, 518, 570, 783, 1019
Sau3AI	GATC	3 cut(s)	172, 216, 793
Sau96I	GGNCC	4 cut(s)	156, 830, 1036, 1049
ScrFI	CCNGG	2 cut(s)	221, 834
SduI	GDGCHC	2 cut(s)	486, 774
SfaNI	GCATC	1 cut(s)	103
SfcI	CTRYAG	1 cut(s)	457
SinI	GGWCC	2 cut(s)	156, 1036
SmlI	CTYRAG	2 cut(s)	544, 773
SmoI	CTYRAG	2 cut(s)	544, 773
SsiI	CCGC	3 cut(s)	74, 131, 407
SspI	AATATT	1 cut(s)	516
SspMI	CTAG	3 cut(s)	125, 557, 1013
SstI	GAGCTC	2 cut(s)	486, 774
StyD4I	CCNGG	2 cut(s)	219, 832
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	4 cut(s)	95, 417, 690, 898
TaiI	ACGT	4 cut(s)	531, 617, 622, 982
TaqI	TCGA	2 cut(s)	21, 69
TauI	GCSGC	2 cut(s)	76, 410
TfiI	GAWTC	3 cut(s)	88, 701, 930
Tru1I	TTAA	6 cut(s)	282, 498, 518, 570, 783, 1019
Tru9I	TTAA	6 cut(s)	282, 498, 518, 570, 783, 1019
TscAI	CASTG	1 cut(s)	100
TseFI	GTSAC	3 cut(s)	275, 522, 615
Tsp45I	GTSAC	3 cut(s)	275, 522, 615
TspDTI	ATGAA	1 cut(s)	323
TspRI	CASTG	1 cut(s)	100
Van91I	CCANNNNNTGG	1 cut(s)	596
VpaK11BI	GGWCC	2 cut(s)	156, 1036
XapI	RAATTY	6 cut(s)	99, 120, 494, 638, 762, 912
XcmI	CCANNNNNNNNNTGG	1 cut(s)	193
XmiI	GTMKAC	1 cut(s)	805
XmnI	GAANNNNTTC	4 cut(s)	369, 672, 951, 1064
XspI	CTAG	3 cut(s)	125, 557, 1013
ZraI	GACGTC	1 cut(s)	615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.