Rmu_sc0001088.1_g000001
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001088.1
OG0031114
Physical Location & Seq
Forward (+)
15240 .. 19220
3981 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1083 bp
atggctctaaaagctgcaatcgaactcaatgtcttcaatatcatagccaattcaggacctggagctcatgtcacatcaaaagaaattgtatctcaaatctcaaccacgaatccaaatgcagcagctgagaatttgaagcgaatattaagagtcctaagtgtgcattctttgttatctgtatctcaaaggccaagctcaagtggtaagactgtactagaagagacttatggtttaacaaaggatactctttgcctagttccaaatgaagatggagtttccttagctccatttattatgttaacttctaatatgatcactgtgaaaagcttgtccatgcttaaagaaacagtgcttgaacctgggagctgtccttttaacaaggctcatggtgtgtccgcatacgagtacatgtctgagaaacctgagctgagccaattgtttaataaggctatgggccaaagtttcatcctcgattttgaagaggtgttaaatgtttacagaggttttgaagaggtagaagagttgatggatgttggaggaggcaatggaactacaattgccaaagtagtctctcggcaaaatgggccgaagcaacagaaccggcagactttcgaaccggctcgaaccaatttgggccaaaaattcggcctaccgactgtcggctcggctgagtcgtaccgtatggctccattcgactcggctacgacccaaaggcccaagcccaaacctgagcaaagggagcagaagcccaggccctcttctgccaagtcgtcactgccgacgacgactctggctgtctaccgttccaacaatccatcaagtctgggtctacaagtcactaccccgatttgtctttcccttatgtacaccggaaggagaagctctgctacccgaacaaccctcccctccgacactacttctcaccccgacaccgcttcaatcagcaaaccgacttgtgctgccgatattcccgccgtgcctgacttcgatcctcctccgctgcaagtcgttaatcacttgaccacagatcccgatatgcactcactcgcactcgacccggcgtcttccaccaaacagcactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00950 ko01100 ko01110 map00940 map00950 map01100 map01110
Pfam Domains
Protein Families
Dimerisation Methyltransf_2

Protein Analysis

360

Amino Acids

38.87

Weight (kDa)

7.06

Isoelectric Point (pI)

49.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimerisation PF08100 1 - 80 3.8e-10 O-methyltransferase dimerisation domain
Methyltransf_2 PF00891 112 - 191 1.1e-13 O-methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031114)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001088.1_g000001 Rmu_sc0003318.1_g000003

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 798, 829
AciI CCGC 4 cut(s) 396, 933, 972, 998
AclWI GGATC 2 cut(s) 983, 1022
AcsI RAATTY 2 cut(s) 130, 641
AcyI GRCGYC 1 cut(s) 1061
AfaI GTAC 4 cut(s) 213, 407, 677, 866
AfiI CCNNNNNNNGG 1 cut(s) 659
AflIII ACRYGT 1 cut(s) 408
AgsI TTSAA 6 cut(s) 37, 136, 356, 479, 509, 939
AhdI GACNNNNNGTC 1 cut(s) 1060
AjnI CCWGG 3 cut(s) 58, 358, 749
AluBI AGCT 9 cut(s) 14, 65, 125, 195, 284, 327, 366, 427, 882
AluI AGCT 9 cut(s) 14, 65, 125, 195, 284, 327, 366, 427, 882
Alw21I GWGCWC 1 cut(s) 67
Alw26I GTCTC 2 cut(s) 215, 574
AlwI GGATC 2 cut(s) 983, 1022
AlwNI CAGNNNCTG 2 cut(s) 59, 125
AoxI GGCC 7 cut(s) 188, 454, 584, 634, 646, 713, 752
ApeKI GCWGC 5 cut(s) 14, 119, 122, 959, 1000
ApoI RAATTY 2 cut(s) 130, 641
ArsI GACNNNNNNTTYG 2 cut(s) 15, 47
AspS9I GGNCC 6 cut(s) 56, 454, 584, 634, 714, 753
AsuC2I CCSGG 1 cut(s) 1058
AsuHPI GGTGA 1 cut(s) 914
AsuII TTCGAA 1 cut(s) 612
AvaII GGWCC 1 cut(s) 56
BanII GRGCYC 1 cut(s) 67
BarI GAAGNNNNNNTAC 2 cut(s) 871, 903
BbsI GAAGAC 2 cut(s) 25, 1056
Bbv12I GWGCWC 1 cut(s) 67
BbvI GCAGC 4 cut(s) 131, 134, 946, 987
BccI CCATC 3 cut(s) 263, 520, 823
BceAI ACGGC 1 cut(s) 959
BciT130I CCWGG 3 cut(s) 60, 360, 751
BciVI GTATCC 1 cut(s) 235
BclI TGATCA 1 cut(s) 312
BcnI CCSGG 1 cut(s) 1058
BcoDI GTCTC 2 cut(s) 215, 574
BfaI CTAG 2 cut(s) 215, 254
BfuI GTATCC 1 cut(s) 235
BisI GCNGC 5 cut(s) 15, 120, 123, 960, 1001
BlpI GCTNAGC 1 cut(s) 428
BlsI GCNGC 5 cut(s) 16, 121, 124, 961, 1002
Bme1390I CCNGG 4 cut(s) 60, 360, 751, 1058
Bme18I GGWCC 1 cut(s) 56
BmeRI GACNNNNNGTC 1 cut(s) 1060
BmgT120I GGNCC 6 cut(s) 56, 454, 584, 634, 714, 753
BmiI GGNNCC 1 cut(s) 687
BmrFI CCNGG 4 cut(s) 60, 360, 751, 1058
BpiI GAAGAC 2 cut(s) 25, 1056
BpmI CTGGAG 1 cut(s) 81
Bpu10I CCTNAGC 3 cut(s) 280, 423, 729
Bpu1102I GCTNAGC 1 cut(s) 428
Bpu14I TTCGAA 1 cut(s) 612
BpuEI CTTGAG 1 cut(s) 181
BpuMI CCSGG 1 cut(s) 1058
BsaHI GRCGYC 1 cut(s) 1061
BsaJI CCNNGG 2 cut(s) 359, 749
BsaWI WCCGGW 1 cut(s) 869
BsaXI ACNNNNNCTCC 2 cut(s) 54, 84
Bsc4I CCNNNNNNNGG 1 cut(s) 659
Bse118I RCCGGY 2 cut(s) 600, 616
Bse3DI GCAATG 1 cut(s) 550
BseBI CCWGG 3 cut(s) 60, 360, 751
BseDI CCNNGG 2 cut(s) 359, 749
BseGI GGATG 2 cut(s) 465, 535
BseLI CCNNNNNNNGG 1 cut(s) 659
BseMI GCAATG 1 cut(s) 550
BseMII CTCAG 6 cut(s) 117, 405, 414, 419, 660, 720
BseRI GAGGAG 2 cut(s) 552, 984
BseXI GCAGC 4 cut(s) 131, 134, 946, 987
BshFI GGCC 7 cut(s) 190, 456, 586, 636, 648, 715, 754
BsiHKAI GWGCWC 1 cut(s) 67
BsiSI CCGG 4 cut(s) 601, 617, 870, 1058
BslI CCNNNNNNNGG 1 cut(s) 659
BsmAI GTCTC 2 cut(s) 215, 574
BsmI GAATGC 1 cut(s) 163
BsnI GGCC 7 cut(s) 190, 456, 586, 636, 648, 715, 754
Bsp119I TTCGAA 1 cut(s) 612
Bsp1286I GDGCHC 1 cut(s) 67
Bsp1407I TGTACA 1 cut(s) 864
Bsp143I GATC 3 cut(s) 312, 988, 1027
Bsp1720I GCTNAGC 1 cut(s) 428
BspACI CCGC 4 cut(s) 396, 933, 972, 998
BspANI GGCC 7 cut(s) 190, 456, 586, 636, 648, 715, 754
BspCNI CTCAG 6 cut(s) 118, 406, 415, 420, 661, 721
BspLI GGNNCC 1 cut(s) 687
BspPI GGATC 2 cut(s) 983, 1022
BspT104I TTCGAA 1 cut(s) 612
BsrDI GCAATG 1 cut(s) 550
BsrFI RCCGGY 2 cut(s) 600, 616
BsrGI TGTACA 1 cut(s) 864
BssAI RCCGGY 2 cut(s) 600, 616
BssECI CCNNGG 2 cut(s) 359, 749
BssMI GATC 3 cut(s) 312, 988, 1027
BssNI GRCGYC 1 cut(s) 1061
Bst2UI CCWGG 3 cut(s) 60, 360, 751
Bst4CI ACNGT 6 cut(s) 211, 319, 349, 658, 680, 803
Bst6I CTCTTC 5 cut(s) 213, 474, 504, 513, 763
BstACI GRCGYC 1 cut(s) 1061
BstAUI TGTACA 1 cut(s) 864
BstBI TTCGAA 1 cut(s) 612
BstDEI CTNAG 8 cut(s) 126, 155, 280, 414, 423, 428, 669, 729
BstF5I GGATG 2 cut(s) 465, 535
BstKTI GATC 3 cut(s) 315, 991, 1030
BstMAI GTCTC 2 cut(s) 215, 574
BstMBI GATC 3 cut(s) 312, 988, 1027
BstMWI GCNNNNNNNGC 3 cut(s) 11, 583, 739
BstNI CCWGG 3 cut(s) 60, 360, 751
BstNSI RCATGY 1 cut(s) 412
BstSCI CCNGG 4 cut(s) 58, 358, 749, 1056
BstV1I GCAGC 4 cut(s) 131, 134, 946, 987
BstV2I GAAGAC 2 cut(s) 25, 1056
BstX2I RGATCY 1 cut(s) 1027
BstYI RGATCY 1 cut(s) 1027
BsuI GTATCC 1 cut(s) 235
BsuRI GGCC 7 cut(s) 190, 456, 586, 636, 648, 715, 754
BtsCI GGATG 2 cut(s) 465, 535
BtsI GCAGTG 1 cut(s) 773
BtsIMutI CAGTG 4 cut(s) 315, 354, 773, 1078
CaiI CAGNNNCTG 2 cut(s) 59, 125
Cfr10I RCCGGY 2 cut(s) 600, 616
Cfr13I GGNCC 6 cut(s) 56, 454, 584, 634, 714, 753
CseI GACGC 1 cut(s) 1050
Csp6I GTAC 4 cut(s) 212, 406, 676, 865
CviAII CATG 4 cut(s) 68, 334, 386, 409
CviQI GTAC 4 cut(s) 212, 406, 676, 865
DdeI CTNAG 8 cut(s) 126, 155, 280, 414, 423, 428, 669, 729
DpnI GATC 3 cut(s) 314, 990, 1029
DpnII GATC 3 cut(s) 312, 988, 1027
DriI GACNNNNNGTC 1 cut(s) 1060
Eam1104I CTCTTC 5 cut(s) 213, 474, 504, 513, 763
Eam1105I GACNNNNNGTC 1 cut(s) 1060
EarI CTCTTC 5 cut(s) 213, 474, 504, 513, 763
Ecl136II GAGCTC 1 cut(s) 65
Eco24I GRGCYC 1 cut(s) 67
Eco47I GGWCC 1 cut(s) 56
Eco53kI GAGCTC 1 cut(s) 65
EcoICRI GAGCTC 1 cut(s) 65
EcoO109I RGGNCCY 2 cut(s) 56, 753
EcoRII CCWGG 3 cut(s) 58, 358, 749
EcoT38I GRGCYC 1 cut(s) 67
FaeI CATG 4 cut(s) 71, 337, 389, 412
FatI CATG 4 cut(s) 67, 333, 385, 408
FauI CCCGC 1 cut(s) 979
FbaI TGATCA 1 cut(s) 312
FblI GTMKAC 2 cut(s) 798, 829
Fnu4HI GCNGC 5 cut(s) 15, 120, 123, 960, 1001
FokI GGATG 2 cut(s) 452, 542
FriOI GRGCYC 1 cut(s) 67
Fsp4HI GCNGC 5 cut(s) 15, 120, 123, 960, 1001
FspBI CTAG 2 cut(s) 215, 254
GluI GCNGC 5 cut(s) 15, 120, 123, 960, 1001
GsuI CTGGAG 1 cut(s) 81
HaeIII GGCC 7 cut(s) 190, 456, 586, 636, 648, 715, 754
HapII CCGG 4 cut(s) 601, 617, 870, 1058
HgaI GACGC 1 cut(s) 1050
Hin1I GRCGYC 1 cut(s) 1061
Hin1II CATG 4 cut(s) 71, 337, 389, 412
HincII GTYRAC 1 cut(s) 300
HindII GTYRAC 1 cut(s) 300
HindIII AAGCTT 1 cut(s) 325
HinfI GANTC 5 cut(s) 109, 150, 671, 695, 787
HpaI GTTAAC 1 cut(s) 300
HpaII CCGG 4 cut(s) 601, 617, 870, 1058
HphI GGTGA 1 cut(s) 914
Hpy166II GTNNAC 5 cut(s) 300, 496, 799, 830, 867
Hpy188I TCNGA 2 cut(s) 415, 910
Hpy188III TCNNGA 2 cut(s) 54, 1031
Hpy8I GTNNAC 5 cut(s) 300, 496, 799, 830, 867
Hpy99I CGWCG 2 cut(s) 784, 787
HpyAV CCTTC 1 cut(s) 867
HpyCH4III ACNGT 6 cut(s) 211, 319, 349, 658, 680, 803
HpyCH4V TGCA 5 cut(s) 17, 119, 163, 1003, 1039
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 583, 739
HpyF3I CTNAG 8 cut(s) 126, 155, 280, 414, 423, 428, 669, 729
Hsp92I GRCGYC 1 cut(s) 1061
Hsp92II CATG 4 cut(s) 71, 337, 389, 412
Ksp22I TGATCA 1 cut(s) 312
KspAI GTTAAC 1 cut(s) 300
Kzo9I GATC 3 cut(s) 312, 988, 1027
LmnI GCTCC 5 cut(s) 62, 289, 363, 691, 739
Lsp1109I GCAGC 4 cut(s) 131, 134, 946, 987
MaeI CTAG 2 cut(s) 215, 254
MaeIII GTNAC 3 cut(s) 70, 771, 835
MalI GATC 3 cut(s) 314, 990, 1029
MboI GATC 3 cut(s) 312, 988, 1027
MboII GAAGA 8 cut(s) 25, 230, 278, 491, 521, 530, 750, 1056
MfeI CAATTG 2 cut(s) 434, 555
MflI RGATCY 1 cut(s) 1027
MhlI GDGCHC 1 cut(s) 67
MluCI AATT 7 cut(s) 49, 84, 130, 434, 555, 628, 641
MlyI GAGTC 4 cut(s) 159, 680, 689, 781
MmeI TCCRAC 3 cut(s) 514, 831, 933
MseI TTAA 8 cut(s) 146, 233, 299, 339, 375, 441, 488, 1011
MspA1I CMGCKG 2 cut(s) 125, 1000
MspI CCGG 4 cut(s) 601, 617, 870, 1058
MspR9I CCNGG 4 cut(s) 60, 360, 751, 1058
MunI CAATTG 2 cut(s) 434, 555
Mva1269I GAATGC 1 cut(s) 163
MvaI CCWGG 3 cut(s) 60, 360, 751
MwoI GCNNNNNNNGC 3 cut(s) 11, 583, 739
NciI CCSGG 1 cut(s) 1058
NdeII GATC 3 cut(s) 312, 988, 1027
NlaIII CATG 4 cut(s) 71, 337, 389, 412
NlaIV GGNNCC 1 cut(s) 687
NmeAIII GCCGAG 3 cut(s) 553, 644, 677
NmuCI GTSAC 3 cut(s) 70, 771, 835
NspI RCATGY 1 cut(s) 412
NspV TTCGAA 1 cut(s) 612
PciI ACATGT 1 cut(s) 408
PcsI WCGNNNNNNNCGW 2 cut(s) 671, 776
PctI GAATGC 1 cut(s) 163
PfeI GAWTC 1 cut(s) 109
PkrI GCNGC 5 cut(s) 16, 121, 124, 961, 1002
PleI GAGTC 4 cut(s) 158, 679, 689, 781
PpsI GAGTC 4 cut(s) 158, 679, 689, 781
PpuMI RGGWCCY 1 cut(s) 56
PscI ACATGT 1 cut(s) 408
Psp124BI GAGCTC 1 cut(s) 67
Psp5II RGGWCCY 1 cut(s) 56
Psp6I CCWGG 3 cut(s) 58, 358, 749
PspGI CCWGG 3 cut(s) 58, 358, 749
PspN4I GGNNCC 1 cut(s) 687
PspPI GGNCC 6 cut(s) 56, 454, 584, 634, 714, 753
PspPPI RGGWCCY 1 cut(s) 56
PstNI CAGNNNCTG 2 cut(s) 59, 125
PsuI RGATCY 1 cut(s) 1027
PvuII CAGCTG 1 cut(s) 125
RsaI GTAC 4 cut(s) 213, 407, 677, 866
RsaNI GTAC 4 cut(s) 212, 406, 676, 865
SacI GAGCTC 1 cut(s) 67
SaqAI TTAA 8 cut(s) 146, 233, 299, 339, 375, 441, 488, 1011
SatI GCNGC 5 cut(s) 15, 120, 123, 960, 1001
Sau3AI GATC 3 cut(s) 312, 988, 1027
Sau96I GGNCC 6 cut(s) 56, 454, 584, 634, 714, 753
SchI GAGTC 4 cut(s) 159, 680, 689, 781
ScrFI CCNGG 4 cut(s) 60, 360, 751, 1058
SduI GDGCHC 1 cut(s) 67
SfuI TTCGAA 1 cut(s) 612
SinI GGWCC 1 cut(s) 56
SmlI CTYRAG 1 cut(s) 196
SmoI CTYRAG 1 cut(s) 196
Sse9I AATT 7 cut(s) 49, 84, 130, 434, 555, 628, 641
SsiI CCGC 4 cut(s) 396, 933, 972, 998
SspI AATATT 1 cut(s) 144
SspMI CTAG 2 cut(s) 215, 254
SstI GAGCTC 1 cut(s) 67
StyD4I CCNGG 4 cut(s) 58, 358, 749, 1056
TaaI ACNGT 6 cut(s) 211, 319, 349, 658, 680, 803
TaqI TCGA 7 cut(s) 21, 471, 612, 622, 693, 987, 1053
TasI AATT 7 cut(s) 49, 84, 130, 434, 555, 628, 641
TatI WGTACW 3 cut(s) 211, 405, 864
TfiI GAWTC 1 cut(s) 109
Tru1I TTAA 8 cut(s) 146, 233, 299, 339, 375, 441, 488, 1011
Tru9I TTAA 8 cut(s) 146, 233, 299, 339, 375, 441, 488, 1011
TscAI CASTG 3 cut(s) 322, 354, 780
TseFI GTSAC 3 cut(s) 70, 771, 835
TseI GCWGC 5 cut(s) 14, 119, 122, 959, 1000
Tsp45I GTSAC 3 cut(s) 70, 771, 835
TspDTI ATGAA 2 cut(s) 279, 454
TspRI CASTG 3 cut(s) 322, 354, 780
VpaK11BI GGWCC 1 cut(s) 56
XapI RAATTY 2 cut(s) 130, 641
XceI RCATGY 1 cut(s) 412
XmiI GTMKAC 2 cut(s) 798, 829
XspI CTAG 2 cut(s) 215, 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.