Rmu_sc0001121.1_g000019

Brefeldin A-inhibited guanine nucleotide-exchange protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001121.1
OG0031115
Physical Location & Seq
Reverse (-)
54642 .. 56038
1397 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 693 bp
atgaaggagaacctacctgatcaacaacggcgtcgtagaagcggcagtcgtcggggccaattgaaatggcggcacacacgaccgtccccttcaccacctttctgcactcccatcgatccccgccgtcaccgttcgtctctattcggacgtggtaccacgttcgtctctattcggacgtggtaccacgcgtcgtccacgcacgacctgaactccaaatccatcgccgccgtcggaaatgaagaccaccgccggacgcctcatccaagtccaacccaccaaatccccgacttgcctttgcaaaatggacggaaccgtggctgctctcattctgaacccaacgcctccgagctcggcccactccacgacaaaggctctggagtggtgaagatcaccgatcccgccatcgattgcatccaaaagctaatcgcgcatggctacctgcacgacgaagtgaagttgctgacgaaattgatcgagtccgtttataaatgccatgatttggaggacgatcaaatggagctgctgatgctgaagacgctgttgtcagcagtgacgtcaatttcgctgcggattcacggcgattgcttgcttcagacgacggccgagcgatcagtcctctctttcttcctagttcacctgcattgcctcatcgcttacttgcttagtgcttcttgtcctggttttttattttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000139 GO:0001817 GO:0001819 GO:0001881 GO:0003674 GO:0005085 GO:0005086 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005815 GO:0005829 GO:0005856 GO:0005874 GO:0005879 GO:0005881 GO:0005929 GO:0005930 GO:0006810 GO:0006887 GO:0006892 GO:0006893 GO:0006996 GO:0007032 GO:0007154 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009553 GO:0009561 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015630 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0019899 GO:0023051 GO:0023052 GO:0030425 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032279 GO:0032280 GO:0032501 GO:0032502 GO:0032588 GO:0032680 GO:0032760 GO:0032838 GO:0032940 GO:0033036 GO:0034237 GO:0034613 GO:0035556 GO:0036477 GO:0042886 GO:0042995 GO:0043001 GO:0043005 GO:0043112 GO:0043170 GO:0043197 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044260 GO:0044309 GO:0044422 GO:0044424 GO:0044430 GO:0044431 GO:0044441 GO:0044444 GO:0044446 GO:0044447 GO:0044456 GO:0044463 GO:0044464 GO:0045184 GO:0045202 GO:0046903 GO:0048193 GO:0048229 GO:0048518 GO:0048856 GO:0050789 GO:0050794 GO:0050811 GO:0050896 GO:0051018 GO:0051020 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051641 GO:0051716 GO:0055037 GO:0061951 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072657 GO:0072659 GO:0090150 GO:0097014 GO:0097447 GO:0097458 GO:0097708 GO:0098588 GO:0098772 GO:0098791 GO:0098794 GO:0098876 GO:0098984 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0120025 GO:0120038 GO:1903555 GO:1903557 GO:1990778
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
DCB DUF1981 Mon2_C Sec7 Sec7_N

Protein Analysis

230

Amino Acids

25.91

Weight (kDa)

9.17

Isoelectric Point (pI)

57.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DCB PF16213 125 - 199 7.1e-12 Mon2/Sec7/BIG1-like, dimerisation and cyclophilin-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031115)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001121.1_g000019 Rmu_sc0001446.1_g000012

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 486
AarI CACCTGC 1 cut(s) 645
AasI GACNNNNNNGTC 1 cut(s) 541
AatII GACGTC 1 cut(s) 557
Acc36I ACCTGC 2 cut(s) 447, 645
Acc65I GGTACC 2 cut(s) 152, 180
AccB1I GGYRCC 2 cut(s) 152, 180
AccB7I CCANNNNNTGG 1 cut(s) 499
AccII CGCG 2 cut(s) 188, 428
AciI CCGC 7 cut(s) 42, 70, 121, 225, 247, 399, 568
AclWI GGATC 2 cut(s) 110, 389
AcoI YGGCCR 1 cut(s) 600
AcuI CTGAAG 2 cut(s) 551, 575
AcyI GRCGYC 3 cut(s) 31, 254, 554
AfaI GTAC 2 cut(s) 154, 182
AfiI CCNNNNNNNGG 1 cut(s) 499
AflIII ACRYGT 1 cut(s) 186
AgsI TTSAA 1 cut(s) 64
AjiI CACGTC 2 cut(s) 149, 177
AjnI CCWGG 1 cut(s) 676
AloI GAACNNNNNNTCC 2 cut(s) 200, 232
AluBI AGCT 3 cut(s) 349, 421, 520
AluI AGCT 3 cut(s) 349, 421, 520
Alw21I GWGCWC 1 cut(s) 351
Alw26I GTCTC 2 cut(s) 141, 169
AlwI GGATC 2 cut(s) 110, 389
AoxI GGCC 3 cut(s) 55, 352, 600
ApeKI GCWGC 3 cut(s) 318, 520, 565
ArsI GACNNNNNNTTYG 2 cut(s) 544, 576
Asp718I GGTACC 2 cut(s) 152, 180
AspLEI GCGC 1 cut(s) 430
AspS9I GGNCC 2 cut(s) 55, 353
AsuHPI GGTGA 5 cut(s) 84, 119, 382, 394, 626
BanI GGYRCC 2 cut(s) 152, 180
BanII GRGCYC 1 cut(s) 351
BbsI GAAGAC 2 cut(s) 246, 539
Bbv12I GWGCWC 1 cut(s) 351
BbvI GCAGC 3 cut(s) 305, 507, 552
BccI CCATC 3 cut(s) 119, 227, 410
BceAI ACGGC 5 cut(s) 44, 108, 212, 592, 615
BcgI CGANNNNNNTGC 2 cut(s) 94, 128
BciT130I CCWGG 1 cut(s) 678
BclI TGATCA 1 cut(s) 19
BcoDI GTCTC 2 cut(s) 141, 169
BfaI CTAG 1 cut(s) 629
BfuAI ACCTGC 2 cut(s) 447, 645
BisI GCNGC 6 cut(s) 43, 71, 225, 319, 521, 566
BlsI GCNGC 6 cut(s) 44, 72, 226, 320, 522, 567
Bme1390I CCNGG 1 cut(s) 678
BmgBI CACGTC 2 cut(s) 149, 177
BmgT120I GGNCC 2 cut(s) 55, 353
BmiI GGNNCC 4 cut(s) 56, 154, 182, 311
BmrFI CCNGG 1 cut(s) 678
BmsI GCATC 2 cut(s) 420, 516
BpiI GAAGAC 2 cut(s) 246, 539
BpmI CTGGAG 1 cut(s) 396
Bsa29I ATCGAT 2 cut(s) 114, 405
BsaHI GRCGYC 3 cut(s) 31, 254, 554
BsaJI CCNNGG 1 cut(s) 313
BsaXI ACNNNNNCTCC 2 cut(s) 194, 224
Bsc4I CCNNNNNNNGG 1 cut(s) 499
Bse3DI GCAATG 1 cut(s) 640
BseBI CCWGG 1 cut(s) 678
BseCI ATCGAT 2 cut(s) 114, 405
BseDI CCNNGG 1 cut(s) 313
BseGI GGATG 2 cut(s) 259, 411
BseLI CCNNNNNNNGG 1 cut(s) 499
BseMI GCAATG 1 cut(s) 640
BseX3I CGGCCG 1 cut(s) 600
BseXI GCAGC 3 cut(s) 305, 507, 552
BsgI GTGCAG 2 cut(s) 88, 425
Bsh1236I CGCG 2 cut(s) 188, 428
Bsh1285I CGRYCG 2 cut(s) 83, 603
BshFI GGCC 3 cut(s) 57, 354, 602
BshNI GGYRCC 2 cut(s) 152, 180
BshVI ATCGAT 2 cut(s) 114, 405
BsiEI CGRYCG 2 cut(s) 83, 603
BsiHKAI GWGCWC 1 cut(s) 351
BsiSI CCGG 1 cut(s) 250
BslFI GGGAC 1 cut(s) 70
BslI CCNNNNNNNGG 1 cut(s) 499
BsmAI GTCTC 2 cut(s) 141, 169
BsmBI CGTCTC 2 cut(s) 141, 169
BsmFI GGGAC 1 cut(s) 70
BsnI GGCC 3 cut(s) 57, 354, 602
Bsp1286I GDGCHC 1 cut(s) 351
Bsp143I GATC 7 cut(s) 19, 115, 387, 394, 471, 508, 608
BspACI CCGC 7 cut(s) 42, 70, 121, 225, 247, 399, 568
BspANI GGCC 3 cut(s) 57, 354, 602
BspDI ATCGAT 2 cut(s) 114, 405
BspFNI CGCG 2 cut(s) 188, 428
BspLI GGNNCC 4 cut(s) 56, 154, 182, 311
BspMI ACCTGC 2 cut(s) 447, 645
BspPI GGATC 2 cut(s) 110, 389
BspT107I GGYRCC 2 cut(s) 152, 180
BsrDI GCAATG 1 cut(s) 640
BssECI CCNNGG 1 cut(s) 313
BssMI GATC 7 cut(s) 19, 115, 387, 394, 471, 508, 608
BssNI GRCGYC 3 cut(s) 31, 254, 554
Bst2UI CCWGG 1 cut(s) 678
Bst4CI ACNGT 3 cut(s) 84, 131, 314
BstACI GRCGYC 3 cut(s) 31, 254, 554
BstC8I GCNNGC 1 cut(s) 587
BstDEI CTNAG 1 cut(s) 662
BstDSI CCRYGG 1 cut(s) 313
BstF5I GGATG 2 cut(s) 259, 411
BstFNI CGCG 2 cut(s) 188, 428
BstHHI GCGC 1 cut(s) 430
BstKTI GATC 7 cut(s) 22, 118, 390, 397, 474, 511, 611
BstMAI GTCTC 2 cut(s) 141, 169
BstMBI GATC 7 cut(s) 19, 115, 387, 394, 471, 508, 608
BstMCI CGRYCG 2 cut(s) 83, 603
BstMWI GCNNNNNNNGC 3 cut(s) 427, 526, 535
BstNI CCWGG 1 cut(s) 678
BstSCI CCNGG 1 cut(s) 676
BstUI CGCG 2 cut(s) 188, 428
BstV1I GCAGC 3 cut(s) 305, 507, 552
BstV2I GAAGAC 2 cut(s) 246, 539
BstZI CGGCCG 1 cut(s) 600
Bsu15I ATCGAT 2 cut(s) 114, 405
BsuRI GGCC 3 cut(s) 57, 354, 602
BsuTUI ATCGAT 2 cut(s) 114, 405
BtgI CCRYGG 1 cut(s) 313
BtgZI GCGATG 2 cut(s) 205, 634
BtrI CACGTC 2 cut(s) 149, 177
BtsCI GGATG 2 cut(s) 259, 411
BtsI GCAGTG 1 cut(s) 555
BtsIMutI CAGTG 1 cut(s) 555
BveI ACCTGC 2 cut(s) 447, 645
Cac8I GCNNGC 1 cut(s) 587
CfoI GCGC 1 cut(s) 430
Cfr13I GGNCC 2 cut(s) 55, 353
ClaI ATCGAT 2 cut(s) 114, 405
CseI GACGC 4 cut(s) 20, 177, 262, 544
Csp6I GTAC 2 cut(s) 153, 181
CviAII CATG 2 cut(s) 431, 494
CviJI RGCY 9 cut(s) 57, 318, 349, 354, 372, 421, 435, 520, 602
CviKI_1 RGCY 9 cut(s) 57, 318, 349, 354, 372, 421, 435, 520, 602
CviQI GTAC 2 cut(s) 153, 181
DdeI CTNAG 1 cut(s) 662
DpnI GATC 7 cut(s) 21, 117, 389, 396, 473, 510, 610
DpnII GATC 7 cut(s) 19, 115, 387, 394, 471, 508, 608
DrdI GACNNNNNNGTC 1 cut(s) 541
DseDI GACNNNNNNGTC 1 cut(s) 541
EaeI YGGCCR 1 cut(s) 600
EagI CGGCCG 1 cut(s) 600
Ecl136II GAGCTC 1 cut(s) 349
EclXI CGGCCG 1 cut(s) 600
Eco24I GRGCYC 1 cut(s) 351
Eco52I CGGCCG 1 cut(s) 600
Eco53kI GAGCTC 1 cut(s) 349
Eco57I CTGAAG 2 cut(s) 551, 575
EcoICRI GAGCTC 1 cut(s) 349
EcoRII CCWGG 1 cut(s) 676
EcoT38I GRGCYC 1 cut(s) 351
Esp3I CGTCTC 2 cut(s) 141, 169
FaeI CATG 2 cut(s) 434, 497
FaiI YATR 3 cut(s) 432, 486, 495
FaqI GGGAC 1 cut(s) 70
FatI CATG 2 cut(s) 430, 493
FauI CCCGC 2 cut(s) 128, 406
FbaI TGATCA 1 cut(s) 19
Fnu4HI GCNGC 6 cut(s) 43, 71, 225, 319, 521, 566
FokI GGATG 2 cut(s) 246, 398
FriOI GRGCYC 1 cut(s) 351
Fsp4HI GCNGC 6 cut(s) 43, 71, 225, 319, 521, 566
FspBI CTAG 1 cut(s) 629
GlaI GCGC 1 cut(s) 429
GluI GCNGC 6 cut(s) 43, 71, 225, 319, 521, 566
GsuI CTGGAG 1 cut(s) 396
HaeIII GGCC 3 cut(s) 57, 354, 602
HapII CCGG 1 cut(s) 250
HgaI GACGC 4 cut(s) 20, 177, 262, 544
HhaI GCGC 1 cut(s) 430
Hin1I GRCGYC 3 cut(s) 31, 254, 554
Hin1II CATG 2 cut(s) 434, 497
Hin6I GCGC 1 cut(s) 428
HinP1I GCGC 1 cut(s) 428
HinfI GANTC 2 cut(s) 476, 571
HpaII CCGG 1 cut(s) 250
HphI GGTGA 5 cut(s) 84, 119, 382, 394, 626
Hpy166II GTNNAC 2 cut(s) 195, 634
Hpy188I TCNGA 6 cut(s) 146, 174, 233, 331, 346, 594
Hpy188III TCNNGA 1 cut(s) 375
Hpy8I GTNNAC 2 cut(s) 195, 634
Hpy99I CGWCG 6 cut(s) 36, 54, 193, 233, 449, 601
HpyAV CCTTC 1 cut(s) 99
HpyCH4III ACNGT 3 cut(s) 84, 131, 314
HpyCH4IV ACGT 4 cut(s) 148, 158, 176, 554
HpyCH4V TGCA 5 cut(s) 105, 298, 411, 442, 640
HpyF10VI GCNNNNNNNGC 3 cut(s) 427, 526, 535
HpyF3I CTNAG 1 cut(s) 662
HpySE526I ACGT 4 cut(s) 148, 158, 176, 554
Hsp92I GRCGYC 3 cut(s) 31, 254, 554
Hsp92II CATG 2 cut(s) 434, 497
HspAI GCGC 1 cut(s) 428
KpnI GGTACC 2 cut(s) 156, 184
Ksp22I TGATCA 1 cut(s) 19
Kzo9I GATC 7 cut(s) 19, 115, 387, 394, 471, 508, 608
LmnI GCTCC 1 cut(s) 517
LpnPI CCDG 7 cut(s) 30, 218, 263, 360, 452, 650, 663
Lsp1109I GCAGC 3 cut(s) 305, 507, 552
LweI GCATC 2 cut(s) 420, 516
MaeI CTAG 1 cut(s) 629
MaeII ACGT 4 cut(s) 148, 158, 176, 554
MaeIII GTNAC 2 cut(s) 125, 550
MalI GATC 7 cut(s) 21, 117, 389, 396, 473, 510, 610
MboI GATC 7 cut(s) 19, 115, 387, 394, 471, 508, 608
MboII GAAGA 4 cut(s) 251, 397, 544, 616
MfeI CAATTG 1 cut(s) 59
MhlI GDGCHC 1 cut(s) 351
MluCI AATT 3 cut(s) 59, 467, 558
MluI ACGCGT 1 cut(s) 186
MlyI GAGTC 1 cut(s) 485
MmeI TCCRAC 2 cut(s) 211, 293
MnlI CCTC 5 cut(s) 267, 352, 496, 626, 656
MspI CCGG 1 cut(s) 250
MspR9I CCNGG 1 cut(s) 678
MunI CAATTG 1 cut(s) 59
MvaI CCWGG 1 cut(s) 678
MvnI CGCG 2 cut(s) 188, 428
MwoI GCNNNNNNNGC 3 cut(s) 427, 526, 535
NdeII GATC 7 cut(s) 19, 115, 387, 394, 471, 508, 608
NlaIII CATG 2 cut(s) 434, 497
NlaIV GGNNCC 4 cut(s) 56, 154, 182, 311
NmeAIII GCCGAG 2 cut(s) 330, 628
NmuCI GTSAC 2 cut(s) 125, 550
PaqCI CACCTGC 1 cut(s) 645
PfeI GAWTC 1 cut(s) 571
PflMI CCANNNNNTGG 1 cut(s) 499
PkrI GCNGC 6 cut(s) 44, 72, 226, 320, 522, 567
PleI GAGTC 1 cut(s) 484
PpsI GAGTC 1 cut(s) 484
PsiI TTATAA 1 cut(s) 486
Psp124BI GAGCTC 1 cut(s) 351
Psp6I CCWGG 1 cut(s) 676
PspGI CCWGG 1 cut(s) 676
PspN4I GGNNCC 4 cut(s) 56, 154, 182, 311
PspPI GGNCC 2 cut(s) 55, 353
RsaI GTAC 2 cut(s) 154, 182
RsaNI GTAC 2 cut(s) 153, 181
SacI GAGCTC 1 cut(s) 351
SatI GCNGC 6 cut(s) 43, 71, 225, 319, 521, 566
Sau3AI GATC 7 cut(s) 19, 115, 387, 394, 471, 508, 608
Sau96I GGNCC 2 cut(s) 55, 353
SchI GAGTC 1 cut(s) 485
ScrFI CCNGG 1 cut(s) 678
SduI GDGCHC 1 cut(s) 351
SfaNI GCATC 2 cut(s) 420, 516
Sse9I AATT 3 cut(s) 59, 467, 558
SsiI CCGC 7 cut(s) 42, 70, 121, 225, 247, 399, 568
SspMI CTAG 1 cut(s) 629
SstI GAGCTC 1 cut(s) 351
StyD4I CCNGG 1 cut(s) 676
TaaI ACNGT 3 cut(s) 84, 131, 314
TaiI ACGT 4 cut(s) 151, 161, 179, 557
TaqI TCGA 3 cut(s) 114, 405, 474
TasI AATT 3 cut(s) 59, 467, 558
TauI GCSGC 3 cut(s) 45, 73, 227
TfiI GAWTC 1 cut(s) 571
TscAI CASTG 1 cut(s) 555
TseFI GTSAC 2 cut(s) 125, 550
TseI GCWGC 3 cut(s) 318, 520, 565
Tsp45I GTSAC 2 cut(s) 125, 550
TspDTI ATGAA 2 cut(s) 17, 252
TspGWI ACGGA 2 cut(s) 322, 469
TspRI CASTG 1 cut(s) 555
Van91I CCANNNNNTGG 1 cut(s) 499
XspI CTAG 1 cut(s) 629
ZraI GACGTC 1 cut(s) 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.