Rmu_sc0001446.1_g000012

Brefeldin A-inhibited guanine nucleotide-exchange protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001446.1
OG0031115
Physical Location & Seq
Reverse (-)
40424 .. 41371
948 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001446.1_g000012.1.cds

Sequence Viewer

Length: 390 bp
atgaagaccaccgccggacggtactcgctcactagtctcaagttttctctgcctcatccaagtccgacccgccaaatccccgacttgcctttgcaaaatggacggaaccgtggctgctctcattccgaacccaacgcctccgagcccggctcactccacgacaaaggctccggagtggtgaagatcaccgatcccgccatcgattgcatccaaaagctaatcgcgcatggctacctgcacgacgaagcaaagttgatgacgaaattgatcgagtccgtttataaatgccacgatttggaggacgatcaaatggagctgctgatgctgaagacgatgttgtcagcagtgacgtcaatttcgctgcggattcacggcgattgcttgctttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000139 GO:0001817 GO:0001819 GO:0001881 GO:0003674 GO:0005085 GO:0005086 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005815 GO:0005829 GO:0005856 GO:0005874 GO:0005879 GO:0005881 GO:0005929 GO:0005930 GO:0006810 GO:0006887 GO:0006892 GO:0006893 GO:0006996 GO:0007032 GO:0007154 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009553 GO:0009561 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015630 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0019899 GO:0023051 GO:0023052 GO:0030425 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032279 GO:0032280 GO:0032501 GO:0032502 GO:0032588 GO:0032680 GO:0032760 GO:0032838 GO:0032940 GO:0033036 GO:0034237 GO:0034613 GO:0035556 GO:0036477 GO:0042886 GO:0042995 GO:0043001 GO:0043005 GO:0043112 GO:0043170 GO:0043197 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044260 GO:0044309 GO:0044422 GO:0044424 GO:0044430 GO:0044431 GO:0044441 GO:0044444 GO:0044446 GO:0044447 GO:0044456 GO:0044463 GO:0044464 GO:0045184 GO:0045202 GO:0046903 GO:0048193 GO:0048229 GO:0048518 GO:0048856 GO:0050789 GO:0050794 GO:0050811 GO:0050896 GO:0051018 GO:0051020 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051641 GO:0051716 GO:0055037 GO:0061951 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072657 GO:0072659 GO:0090150 GO:0097014 GO:0097447 GO:0097458 GO:0097708 GO:0098588 GO:0098772 GO:0098791 GO:0098794 GO:0098876 GO:0098984 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0120025 GO:0120038 GO:1903555 GO:1903557 GO:1990778
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
DCB DUF1981 Mon2_C Sec7 Sec7_N

Protein Analysis

129

Amino Acids

14.22

Weight (kDa)

6.64

Isoelectric Point (pI)

29.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031115)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001121.1_g000019 Rmu_sc0001446.1_g000012

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 282
AasI GACNNNNNNGTC 1 cut(s) 337
AatII GACGTC 1 cut(s) 353
Acc36I ACCTGC 1 cut(s) 243
AccB7I CCANNNNNTGG 1 cut(s) 295
AccII CGCG 1 cut(s) 224
AccIII TCCGGA 1 cut(s) 170
AciI CCGC 4 cut(s) 12, 70, 195, 364
AclWI GGATC 1 cut(s) 185
AcuI CTGAAG 1 cut(s) 347
AcyI GRCGYC 1 cut(s) 350
AfaI GTAC 1 cut(s) 23
AfiI CCNNNNNNNGG 2 cut(s) 18, 295
AhlI ACTAGT 1 cut(s) 32
AluBI AGCT 2 cut(s) 217, 316
AluI AGCT 2 cut(s) 217, 316
Alw26I GTCTC 1 cut(s) 41
AlwI GGATC 1 cut(s) 185
Aor13HI TCCGGA 1 cut(s) 170
ApeKI GCWGC 3 cut(s) 114, 316, 361
ArsI GACNNNNNNTTYG 2 cut(s) 340, 372
AspLEI GCGC 1 cut(s) 226
AsuC2I CCSGG 1 cut(s) 147
AsuHPI GGTGA 2 cut(s) 178, 190
BanII GRGCYC 1 cut(s) 147
BbsI GAAGAC 2 cut(s) 11, 335
BbvI GCAGC 3 cut(s) 101, 303, 348
BccI CCATC 1 cut(s) 206
BceAI ACGGC 1 cut(s) 388
BcnI CCSGG 1 cut(s) 147
BcoDI GTCTC 1 cut(s) 41
BcuI ACTAGT 1 cut(s) 32
BfaI CTAG 1 cut(s) 33
BfuAI ACCTGC 1 cut(s) 243
BisI GCNGC 3 cut(s) 115, 317, 362
BlsI GCNGC 3 cut(s) 116, 318, 363
Bme1390I CCNGG 1 cut(s) 147
BmiI GGNNCC 2 cut(s) 107, 169
BmrFI CCNGG 1 cut(s) 147
BmsI GCATC 2 cut(s) 216, 312
BpiI GAAGAC 2 cut(s) 11, 335
BplI GAGNNNNNCTC 2 cut(s) 134, 166
BpuEI CTTGAG 1 cut(s) 23
BpuMI CCSGG 1 cut(s) 147
Bsa29I ATCGAT 1 cut(s) 201
BsaHI GRCGYC 1 cut(s) 350
BsaJI CCNNGG 1 cut(s) 109
BsaWI WCCGGW 1 cut(s) 170
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
Bsc4I CCNNNNNNNGG 2 cut(s) 18, 295
BseAI TCCGGA 1 cut(s) 170
BseCI ATCGAT 1 cut(s) 201
BseDI CCNNGG 1 cut(s) 109
BseGI GGATG 2 cut(s) 55, 207
BseLI CCNNNNNNNGG 2 cut(s) 18, 295
BseXI GCAGC 3 cut(s) 101, 303, 348
BsgI GTGCAG 1 cut(s) 221
Bsh1236I CGCG 1 cut(s) 224
BshVI ATCGAT 1 cut(s) 201
BsiSI CCGG 3 cut(s) 15, 147, 171
BslI CCNNNNNNNGG 2 cut(s) 18, 295
BsmAI GTCTC 1 cut(s) 41
Bsp1286I GDGCHC 1 cut(s) 147
Bsp13I TCCGGA 1 cut(s) 170
Bsp143I GATC 4 cut(s) 183, 190, 267, 304
BspACI CCGC 4 cut(s) 12, 70, 195, 364
BspDI ATCGAT 1 cut(s) 201
BspEI TCCGGA 1 cut(s) 170
BspFNI CGCG 1 cut(s) 224
BspLI GGNNCC 2 cut(s) 107, 169
BspMI ACCTGC 1 cut(s) 243
BspPI GGATC 1 cut(s) 185
BssECI CCNNGG 1 cut(s) 109
BssMI GATC 4 cut(s) 183, 190, 267, 304
BssNI GRCGYC 1 cut(s) 350
Bst4CI ACNGT 2 cut(s) 21, 110
BstACI GRCGYC 1 cut(s) 350
BstC8I GCNNGC 1 cut(s) 383
BstDSI CCRYGG 1 cut(s) 109
BstF5I GGATG 2 cut(s) 55, 207
BstFNI CGCG 1 cut(s) 224
BstHHI GCGC 1 cut(s) 226
BstKTI GATC 4 cut(s) 186, 193, 270, 307
BstMAI GTCTC 1 cut(s) 41
BstMBI GATC 4 cut(s) 183, 190, 267, 304
BstMWI GCNNNNNNNGC 2 cut(s) 223, 322
BstSCI CCNGG 1 cut(s) 145
BstUI CGCG 1 cut(s) 224
BstV1I GCAGC 3 cut(s) 101, 303, 348
BstV2I GAAGAC 2 cut(s) 11, 335
Bsu15I ATCGAT 1 cut(s) 201
BsuTUI ATCGAT 1 cut(s) 201
BtgI CCRYGG 1 cut(s) 109
BtsCI GGATG 2 cut(s) 55, 207
BtsI GCAGTG 1 cut(s) 351
BtsIMutI CAGTG 1 cut(s) 351
BveI ACCTGC 1 cut(s) 243
Cac8I GCNNGC 1 cut(s) 383
CfoI GCGC 1 cut(s) 226
ClaI ATCGAT 1 cut(s) 201
Csp6I GTAC 1 cut(s) 22
CviAII CATG 1 cut(s) 227
CviJI RGCY 7 cut(s) 114, 145, 150, 168, 217, 231, 316
CviKI_1 RGCY 7 cut(s) 114, 145, 150, 168, 217, 231, 316
CviQI GTAC 1 cut(s) 22
DpnI GATC 4 cut(s) 185, 192, 269, 306
DpnII GATC 4 cut(s) 183, 190, 267, 304
DrdI GACNNNNNNGTC 1 cut(s) 337
DseDI GACNNNNNNGTC 1 cut(s) 337
Eco24I GRGCYC 1 cut(s) 147
Eco57I CTGAAG 1 cut(s) 347
EcoT38I GRGCYC 1 cut(s) 147
FaeI CATG 1 cut(s) 230
FaiI YATR 2 cut(s) 228, 282
FatI CATG 1 cut(s) 226
FauI CCCGC 2 cut(s) 77, 202
Fnu4HI GCNGC 3 cut(s) 115, 317, 362
FokI GGATG 2 cut(s) 42, 194
FriOI GRGCYC 1 cut(s) 147
Fsp4HI GCNGC 3 cut(s) 115, 317, 362
FspBI CTAG 1 cut(s) 33
GlaI GCGC 1 cut(s) 225
GluI GCNGC 3 cut(s) 115, 317, 362
HapII CCGG 3 cut(s) 15, 147, 171
HhaI GCGC 1 cut(s) 226
Hin1I GRCGYC 1 cut(s) 350
Hin1II CATG 1 cut(s) 230
Hin6I GCGC 1 cut(s) 224
HinP1I GCGC 1 cut(s) 224
HinfI GANTC 2 cut(s) 272, 367
HpaII CCGG 3 cut(s) 15, 147, 171
HphI GGTGA 2 cut(s) 178, 190
Hpy188I TCNGA 3 cut(s) 66, 127, 142
Hpy188III TCNNGA 1 cut(s) 171
Hpy99I CGWCG 1 cut(s) 245
HpyCH4III ACNGT 2 cut(s) 21, 110
HpyCH4IV ACGT 1 cut(s) 350
HpyCH4V TGCA 3 cut(s) 94, 207, 238
HpyF10VI GCNNNNNNNGC 2 cut(s) 223, 322
HpySE526I ACGT 1 cut(s) 350
Hsp92I GRCGYC 1 cut(s) 350
Hsp92II CATG 1 cut(s) 230
HspAI GCGC 1 cut(s) 224
Kpn2I TCCGGA 1 cut(s) 170
Kzo9I GATC 4 cut(s) 183, 190, 267, 304
LmnI GCTCC 2 cut(s) 173, 313
LpnPI CCDG 4 cut(s) 28, 160, 184, 248
Lsp1109I GCAGC 3 cut(s) 101, 303, 348
LweI GCATC 2 cut(s) 216, 312
MaeI CTAG 1 cut(s) 33
MaeII ACGT 1 cut(s) 350
MaeIII GTNAC 1 cut(s) 346
MalI GATC 4 cut(s) 185, 192, 269, 306
MboI GATC 4 cut(s) 183, 190, 267, 304
MboII GAAGA 3 cut(s) 16, 193, 340
MhlI GDGCHC 1 cut(s) 147
MluCI AATT 2 cut(s) 263, 354
MlyI GAGTC 1 cut(s) 281
MmeI TCCRAC 1 cut(s) 89
MnlI CCTC 3 cut(s) 63, 148, 292
MroI TCCGGA 1 cut(s) 170
MspI CCGG 3 cut(s) 15, 147, 171
MspR9I CCNGG 1 cut(s) 147
MvnI CGCG 1 cut(s) 224
MwoI GCNNNNNNNGC 2 cut(s) 223, 322
NciI CCSGG 1 cut(s) 147
NdeII GATC 4 cut(s) 183, 190, 267, 304
NlaIII CATG 1 cut(s) 230
NlaIV GGNNCC 2 cut(s) 107, 169
NmuCI GTSAC 1 cut(s) 346
PfeI GAWTC 1 cut(s) 367
PflMI CCANNNNNTGG 1 cut(s) 295
PkrI GCNGC 3 cut(s) 116, 318, 363
PleI GAGTC 1 cut(s) 280
PpsI GAGTC 1 cut(s) 280
PsiI TTATAA 1 cut(s) 282
PspN4I GGNNCC 2 cut(s) 107, 169
RsaI GTAC 1 cut(s) 23
RsaNI GTAC 1 cut(s) 22
SatI GCNGC 3 cut(s) 115, 317, 362
Sau3AI GATC 4 cut(s) 183, 190, 267, 304
SchI GAGTC 1 cut(s) 281
ScrFI CCNGG 1 cut(s) 147
SduI GDGCHC 1 cut(s) 147
SetI ASST 4 cut(s) 219, 237, 318, 353
SfaNI GCATC 2 cut(s) 216, 312
SmlI CTYRAG 1 cut(s) 38
SmoI CTYRAG 1 cut(s) 38
SpeI ACTAGT 1 cut(s) 32
Sse9I AATT 2 cut(s) 263, 354
SsiI CCGC 4 cut(s) 12, 70, 195, 364
SspMI CTAG 1 cut(s) 33
StyD4I CCNGG 1 cut(s) 145
TaaI ACNGT 2 cut(s) 21, 110
TaiI ACGT 1 cut(s) 353
TaqI TCGA 2 cut(s) 201, 270
TasI AATT 2 cut(s) 263, 354
TfiI GAWTC 1 cut(s) 367
TscAI CASTG 1 cut(s) 351
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 3 cut(s) 114, 316, 361
Tsp45I GTSAC 1 cut(s) 346
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 118, 265
TspRI CASTG 1 cut(s) 351
Van91I CCANNNNNTGG 1 cut(s) 295
XspI CTAG 1 cut(s) 33
ZraI GACGTC 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.