Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001208.1

Orthogroup ID

OG0031120

Physical Location & Seq

Genomic Coordinates Forward (+)

404862 .. 406424

Gene Structure 1563 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

atggattctgcaactgcagccatgaaacgatctgactccatagccgaaagcatgcccgacgctctaaggcagagccggtaccatatgaagaggtgttttgctaagttcattgaaaagggaaaaaggataatgaaacttcagcatttgatgaatgaagtggagttagtcatagatgacaaggttgaaatgaaccaagtcttggcaggagtacttggctatatattgtgttcaactcaggaagctgttgttagtcccccacatgttctcttttcaataagaccaaaccctggatattgggaatttgttaaagtcagctctgaggatctctcagttgagggcatcactgtgagggactacttgaaatgcaaagaaacactttatgatgagaaatgggccaatgatgaaaatgcattggaggtggattttagagcaattgactactctactcctcacttaactctatcgtcctcgattggaaatggactcgactatgtttccaagttcatgacttcgatgctagctgggagattggagaattcgcagccccttgtggactacttactttcactgaattatcaaggagataaacttatgatcaatgacaccctcaacactgctgcaaagcttcagatggccatgattgtgacagaagtttacctctcggggcttccgaaggacactccatttcaaaattttgaacttaggtttaaggagtggggctttgagaagggttggggagacacagcagagagatccaaggaaacaatgagaatactatcagaagtactacaagctccagatccacttaacatggagaggtttttgagcaggcttcctaccatattcaatgttgtaatattctctcctcatggctattttggccaagctgatgttcttggtttgccagacaccggtggacaggttgtttatattcttgatcaagttaaagctctggaagaagaattgctccttagaattaagcatcaagggcttgctgtgaagcctcagatttttgtggtgagtttcacccctcataaaggtggttcagtttatcgggtatactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0008194 GO:0016157 GO:0016740 GO:0016757 GO:0016758 GO:0030312 GO:0033036 GO:0033037 GO:0035251 GO:0044464 GO:0046527 GO:0051179 GO:0052545 GO:0071944 GO:0080165

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glycos_transf_1 Sucrose_synth

Protein Analysis

354

Amino Acids

40.13

Weight (kDa)

5.5

Isoelectric Point (pI)

29.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SUS_N	PF24861	10 - 124	2.4e-46	Sucrose synthase N-terminal
SUS_EPBD	PF24862	160 - 247	1.4e-27	Sucrose synthase EPBD domain
GT-B_Sucrose_synth	PF00862	270 - 341	1e-34	Sucrose synthase first GT-B domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031120)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001208.1_g000095 Rmu_sc0025716.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	78
AccB1I	GGYRCC	1 cut(s)	78
AccB7I	CCANNNNNTGG	2 cut(s)	199, 287
AccI	GTMKAC	1 cut(s)	1059
AclWI	GGATC	3 cut(s)	330, 747, 794
AcoI	YGGCCR	2 cut(s)	633, 880
AcsI	RAATTY	3 cut(s)	299, 535, 691
AcuI	CTGAAG	2 cut(s)	122, 611
AfaI	GTAC	3 cut(s)	80, 210, 786
AfiI	CCNNNNNNNGG	4 cut(s)	199, 287, 911, 1037
AflIII	ACRYGT	1 cut(s)	259
AgeI	ACCGGT	1 cut(s)	911
AgsI	TTSAA	8 cut(s)	113, 185, 231, 273, 361, 689, 698, 847
AjnI	CCWGG	1 cut(s)	286
AjuI	GAANNNNNNNTTGG	4 cut(s)	182, 214, 876, 908
AluBI	AGCT	7 cut(s)	242, 315, 521, 625, 794, 887, 950
AluI	AGCT	7 cut(s)	242, 315, 521, 625, 794, 887, 950
Alw26I	GTCTC	1 cut(s)	732
AlwI	GGATC	3 cut(s)	330, 747, 794
Ama87I	CYCGRG	1 cut(s)	661
AoxI	GGCC	3 cut(s)	393, 633, 880
ApeKI	GCWGC	3 cut(s)	17, 541, 617
ApoI	RAATTY	3 cut(s)	299, 535, 691
AsiGI	ACCGGT	1 cut(s)	911
Asp718I	GGTACC	1 cut(s)	78
AspS9I	GGNCC	1 cut(s)	393
AsuHPI	GGTGA	2 cut(s)	1018, 1030
AsuNHI	GCTAGC	1 cut(s)	517
AvaI	CYCGRG	1 cut(s)	661
BalI	TGGCCA	2 cut(s)	635, 882
BanI	GGYRCC	1 cut(s)	78
BbvI	GCAGC	3 cut(s)	29, 553, 604
BccI	CCATC	1 cut(s)	625
BciT130I	CCWGG	1 cut(s)	288
BclI	TGATCA	2 cut(s)	594, 937
BcoDI	GTCTC	1 cut(s)	732
BfaI	CTAG	1 cut(s)	518
BfmI	CTRYAG	1 cut(s)	15
BisI	GCNGC	3 cut(s)	18, 542, 618
BlsI	GCNGC	3 cut(s)	19, 543, 619
BmcAI	AGTACT	2 cut(s)	210, 786
Bme1390I	CCNGG	1 cut(s)	288
BmeT110I	CYCGRG	1 cut(s)	661
BmgT120I	GGNCC	1 cut(s)	393
BmiI	GGNNCC	1 cut(s)	80
BmrFI	CCNGG	1 cut(s)	288
BmsI	GCATC	3 cut(s)	348, 504, 991
BmtI	GCTAGC	1 cut(s)	521
BplI	GAGNNNNNCTC	2 cut(s)	311, 343
BpmI	CTGGAG	1 cut(s)	780
BsaJI	CCNNGG	2 cut(s)	286, 756
BsaWI	WCCGGW	1 cut(s)	911
Bsc4I	CCNNNNNNNGG	4 cut(s)	199, 287, 911, 1037
Bse118I	RCCGGY	2 cut(s)	75, 911
BseBI	CCWGG	1 cut(s)	288
BseDI	CCNNGG	2 cut(s)	286, 756
BseLI	CCNNNNNNNGG	4 cut(s)	199, 287, 911, 1037
BseMII	CTCAG	4 cut(s)	248, 309, 342, 1019
BseRI	GAGGAG	2 cut(s)	438, 855
BseXI	GCAGC	3 cut(s)	29, 553, 604
BseYI	CCCAGC	1 cut(s)	521
BshFI	GGCC	3 cut(s)	395, 635, 882
BshNI	GGYRCC	1 cut(s)	78
BshTI	ACCGGT	1 cut(s)	911
BsiHKCI	CYCGRG	1 cut(s)	661
BsiSI	CCGG	2 cut(s)	76, 912
BslFI	GGGAC	2 cut(s)	237, 365
BslI	CCNNNNNNNGG	4 cut(s)	199, 287, 911, 1037
BsmAI	GTCTC	1 cut(s)	732
BsmFI	GGGAC	2 cut(s)	237, 365
BsnI	GGCC	3 cut(s)	395, 635, 882
BsoBI	CYCGRG	1 cut(s)	661
Bsp143I	GATC	6 cut(s)	29, 322, 594, 752, 799, 937
BspANI	GGCC	3 cut(s)	395, 635, 882
BspCNI	CTCAG	4 cut(s)	247, 310, 341, 1018
BspHI	TCATGA	1 cut(s)	504
BspLI	GGNNCC	1 cut(s)	80
BspMAI	CTGCAG	1 cut(s)	19
BspOI	GCTAGC	1 cut(s)	521
BspPI	GGATC	3 cut(s)	330, 747, 794
BspT107I	GGYRCC	1 cut(s)	78
BsrFI	RCCGGY	2 cut(s)	75, 911
BssAI	RCCGGY	2 cut(s)	75, 911
BssECI	CCNNGG	2 cut(s)	286, 756
BssMI	GATC	6 cut(s)	29, 322, 594, 752, 799, 937
BssNAI	GTATAC	1 cut(s)	1060
BssT1I	CCWWGG	1 cut(s)	756
Bst1107I	GTATAC	1 cut(s)	1060
Bst2UI	CCWGG	1 cut(s)	288
Bst4CI	ACNGT	1 cut(s)	346
Bst6I	CTCTTC	1 cut(s)	83
BstC8I	GCNNGC	4 cut(s)	53, 519, 830, 993
BstDEI	CTNAG	8 cut(s)	65, 102, 234, 318, 328, 701, 971, 1005
BstENI	CCTNNNNNAGG	1 cut(s)	1035
BstKTI	GATC	6 cut(s)	32, 325, 597, 755, 802, 940
BstMAI	GTCTC	1 cut(s)	732
BstMBI	GATC	6 cut(s)	29, 322, 594, 752, 799, 937
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 879, 988
BstNI	CCWGG	1 cut(s)	288
BstNSI	RCATGY	2 cut(s)	55, 263
BstSCI	CCNGG	1 cut(s)	286
BstSFI	CTRYAG	1 cut(s)	15
BstV1I	GCAGC	3 cut(s)	29, 553, 604
BstX2I	RGATCY	3 cut(s)	322, 752, 799
BstYI	RGATCY	3 cut(s)	322, 752, 799
BstZ17I	GTATAC	1 cut(s)	1060
BsuRI	GGCC	3 cut(s)	395, 635, 882
BtsI	GCAGTG	1 cut(s)	612
BtsIMutI	CAGTG	3 cut(s)	342, 566, 612
Cac8I	GCNNGC	4 cut(s)	53, 519, 830, 993
CciI	TCATGA	1 cut(s)	504
Cfr10I	RCCGGY	2 cut(s)	75, 911
Cfr13I	GGNCC	1 cut(s)	393
CseI	GACGC	1 cut(s)	68
Csp6I	GTAC	3 cut(s)	79, 209, 785
CspAI	ACCGGT	1 cut(s)	911
CviAII	CATG	7 cut(s)	22, 52, 260, 505, 637, 811, 869
CviQI	GTAC	3 cut(s)	79, 209, 785
DdeI	CTNAG	8 cut(s)	65, 102, 234, 318, 328, 701, 971, 1005
DpnI	GATC	6 cut(s)	31, 324, 596, 754, 801, 939
DpnII	GATC	6 cut(s)	29, 322, 594, 752, 799, 937
EaeI	YGGCCR	2 cut(s)	633, 880
Eam1104I	CTCTTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	83
Eco130I	CCWWGG	1 cut(s)	756
Eco57I	CTGAAG	2 cut(s)	122, 611
Eco88I	CYCGRG	1 cut(s)	661
EcoNI	CCTNNNNNAGG	1 cut(s)	1035
EcoRI	GAATTC	1 cut(s)	535
EcoRII	CCWGG	1 cut(s)	286
EcoT14I	CCWWGG	1 cut(s)	756
EcoT22I	ATGCAT	1 cut(s)	412
ErhI	CCWWGG	1 cut(s)	756
FaeI	CATG	7 cut(s)	25, 55, 263, 508, 640, 814, 872
FalI	AAGNNNNNCTT	2 cut(s)	360, 392
FaqI	GGGAC	2 cut(s)	237, 365
FatI	CATG	7 cut(s)	21, 51, 259, 504, 636, 810, 868
FauNDI	CATATG	1 cut(s)	84
FbaI	TGATCA	2 cut(s)	594, 937
FblI	GTMKAC	1 cut(s)	1059
Fnu4HI	GCNGC	3 cut(s)	18, 542, 618
Fsp4HI	GCNGC	3 cut(s)	18, 542, 618
FspBI	CTAG	1 cut(s)	518
GluI	GCNGC	3 cut(s)	18, 542, 618
GsaI	CCCAGC	1 cut(s)	525
GsuI	CTGGAG	1 cut(s)	780
HaeIII	GGCC	3 cut(s)	395, 635, 882
HapII	CCGG	2 cut(s)	76, 912
HgaI	GACGC	1 cut(s)	68
Hin1II	CATG	7 cut(s)	25, 55, 263, 508, 640, 814, 872
HindIII	AAGCTT	1 cut(s)	623
HinfI	GANTC	3 cut(s)	5, 35, 483
HpaII	CCGG	2 cut(s)	76, 912
HphI	GGTGA	2 cut(s)	1018, 1030
Hpy166II	GTNNAC	4 cut(s)	553, 655, 917, 1060
Hpy188I	TCNGA	6 cut(s)	34, 319, 630, 672, 781, 1008
Hpy188III	TCNNGA	5 cut(s)	236, 505, 797, 935, 953
Hpy8I	GTNNAC	4 cut(s)	553, 655, 917, 1060
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	2 cut(s)	667, 721
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4V	TGCA	5 cut(s)	11, 17, 366, 410, 620
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 879, 988
HpyF3I	CTNAG	8 cut(s)	65, 102, 234, 318, 328, 701, 971, 1005
Hsp92II	CATG	7 cut(s)	25, 55, 263, 508, 640, 814, 872
KpnI	GGTACC	1 cut(s)	82
Ksp22I	TGATCA	2 cut(s)	594, 937
Kzo9I	GATC	6 cut(s)	29, 322, 594, 752, 799, 937
LmnI	GCTCC	2 cut(s)	799, 972
Lsp1109I	GCAGC	3 cut(s)	29, 553, 604
LweI	GCATC	3 cut(s)	348, 504, 991
MaeI	CTAG	1 cut(s)	518
MaeIII	GTNAC	1 cut(s)	643
MalI	GATC	6 cut(s)	31, 324, 596, 754, 801, 939
MboI	GATC	6 cut(s)	29, 322, 594, 752, 799, 937
MboII	GAAGA	3 cut(s)	100, 968, 971
MfeI	CAATTG	1 cut(s)	432
MflI	RGATCY	3 cut(s)	322, 752, 799
MlsI	TGGCCA	2 cut(s)	635, 882
MluCI	AATT	7 cut(s)	299, 432, 535, 571, 691, 962, 975
MluNI	TGGCCA	2 cut(s)	635, 882
MlyI	GAGTC	2 cut(s)	29, 477
Mox20I	TGGCCA	2 cut(s)	635, 882
Mph1103I	ATGCAT	1 cut(s)	412
MscI	TGGCCA	2 cut(s)	635, 882
MseI	TTAA	6 cut(s)	306, 455, 708, 807, 945, 978
MslI	CAYNNNNRTG	3 cut(s)	344, 641, 1038
Msp20I	TGGCCA	2 cut(s)	635, 882
MspI	CCGG	2 cut(s)	76, 912
MspR9I	CCNGG	1 cut(s)	288
MunI	CAATTG	1 cut(s)	432
MvaI	CCWGG	1 cut(s)	288
MwoI	GCNNNNNNNGC	3 cut(s)	17, 879, 988
NdeI	CATATG	1 cut(s)	84
NdeII	GATC	6 cut(s)	29, 322, 594, 752, 799, 937
NheI	GCTAGC	1 cut(s)	517
NlaIII	CATG	7 cut(s)	25, 55, 263, 508, 640, 814, 872
NlaIV	GGNNCC	1 cut(s)	80
NmuCI	GTSAC	1 cut(s)	643
NsiI	ATGCAT	1 cut(s)	412
NspI	RCATGY	2 cut(s)	55, 263
PaeI	GCATGC	1 cut(s)	55
PagI	TCATGA	1 cut(s)	504
PciI	ACATGT	1 cut(s)	259
PcsI	WCGNNNNNNNCGW	1 cut(s)	668
PfeI	GAWTC	1 cut(s)	5
PflMI	CCANNNNNTGG	2 cut(s)	199, 287
PinAI	ACCGGT	1 cut(s)	911
PkrI	GCNGC	3 cut(s)	19, 543, 619
PleI	GAGTC	2 cut(s)	29, 477
PpsI	GAGTC	2 cut(s)	29, 477
PscI	ACATGT	1 cut(s)	259
Psp6I	CCWGG	1 cut(s)	286
PspFI	CCCAGC	1 cut(s)	521
PspGI	CCWGG	1 cut(s)	286
PspN4I	GGNNCC	1 cut(s)	80
PspPI	GGNCC	1 cut(s)	393
PstI	CTGCAG	1 cut(s)	19
PsuI	RGATCY	3 cut(s)	322, 752, 799
RsaI	GTAC	3 cut(s)	80, 210, 786
RsaNI	GTAC	3 cut(s)	79, 209, 785
RseI	CAYNNNNRTG	3 cut(s)	344, 641, 1038
SaqAI	TTAA	6 cut(s)	306, 455, 708, 807, 945, 978
SatI	GCNGC	3 cut(s)	18, 542, 618
Sau3AI	GATC	6 cut(s)	29, 322, 594, 752, 799, 937
Sau96I	GGNCC	1 cut(s)	393
ScaI	AGTACT	2 cut(s)	210, 786
SchI	GAGTC	2 cut(s)	29, 477
ScrFI	CCNGG	1 cut(s)	288
SfaNI	GCATC	3 cut(s)	348, 504, 991
SfcI	CTRYAG	1 cut(s)	15
SgrAI	CRCCGGYG	1 cut(s)	911
SmiMI	CAYNNNNRTG	3 cut(s)	344, 641, 1038
SphI	GCATGC	1 cut(s)	55
Sse9I	AATT	7 cut(s)	299, 432, 535, 571, 691, 962, 975
SspI	AATATT	1 cut(s)	858
SspMI	CTAG	1 cut(s)	518
StyD4I	CCNGG	1 cut(s)	286
StyI	CCWWGG	1 cut(s)	756
TaaI	ACNGT	1 cut(s)	346
TaqI	TCGA	3 cut(s)	470, 486, 512
TasI	AATT	7 cut(s)	299, 432, 535, 571, 691, 962, 975
TatI	WGTACW	2 cut(s)	208, 784
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	6 cut(s)	306, 455, 708, 807, 945, 978
Tru9I	TTAA	6 cut(s)	306, 455, 708, 807, 945, 978
TscAI	CASTG	3 cut(s)	349, 573, 619
TseFI	GTSAC	1 cut(s)	643
TseI	GCWGC	3 cut(s)	17, 541, 617
Tsp45I	GTSAC	1 cut(s)	643
TspDTI	ATGAA	9 cut(s)	38, 97, 101, 146, 164, 168, 203, 417, 493
TspRI	CASTG	3 cut(s)	349, 573, 619
Van91I	CCANNNNNTGG	2 cut(s)	199, 287
XagI	CCTNNNNNAGG	1 cut(s)	1035
XapI	RAATTY	3 cut(s)	299, 535, 691
XceI	RCATGY	2 cut(s)	55, 263
XmiI	GTMKAC	1 cut(s)	1059
XspI	CTAG	1 cut(s)	518
ZrmI	AGTACT	2 cut(s)	210, 786
Zsp2I	ATGCAT	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.