Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001209.1

Orthogroup ID

OG0025504

Physical Location & Seq

Genomic Coordinates Reverse (-)

56747 .. 57444

Gene Structure 698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

atggaaccacgaactctgcaactgatggagcttcaaacccaacaacagacggaactacaagcccagcaactcactgaggagggaggaagcaaccaagcagccgggactccgggagtagtgccaacacacctatcaggccaaccagtaaccgagcagattcaaggaatctgtctccatctgaagccgtatgggcagatcgagaacaaaaacgttttctattggttccagaacctcaaggctcgtgagagtcagaagttgaaggaaatccggaatgttcgggttggtggatccctggatctcaaatttggatccacaagttctaccgaaggtggcagatccatcgatcttaacttcggttccactgattccactggtgatgatggatcgctcgatctaacccttgggttacgatcattcatggaacgacgaggaggagatcaccaggaggtcgagactcttcccctgttccctgagcacggtgaaaacatccttggtaacccgaagactacatccgagggcggtagctcatttggttactattccggtggctcaggcagttacaacagtggttctcctgtttctcttgagctcagcctcaacccatccggagccgctgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

206

Amino Acids

22.14

Weight (kDa)

4.85

Isoelectric Point (pI)

52.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025504)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001209.1_g000015 Rmu_sc0001621.1_g000009 Rmu_sc0007641.1_g000003

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	267, 605
AciI	CCGC	2 cut(s)	519, 612
AclI	AACGTT	1 cut(s)	210
AclWI	GGATC	7 cut(s)	282, 295, 303, 303, 316, 330, 391
AcsI	RAATTY	1 cut(s)	302
AcuI	CTGAAG	1 cut(s)	200
AfiI	CCNNNNNNNGG	1 cut(s)	476
AgsI	TTSAA	3 cut(s)	35, 161, 259
AjnI	CCWGG	2 cut(s)	291, 441
AjuI	GAANNNNNNNTTGG	2 cut(s)	474, 506
AluBI	AGCT	3 cut(s)	31, 525, 589
AluI	AGCT	3 cut(s)	31, 525, 589
Alw21I	GWGCWC	2 cut(s)	477, 591
Alw26I	GTCTC	2 cut(s)	176, 446
AlwI	GGATC	7 cut(s)	282, 295, 303, 303, 316, 330, 391
Aor13HI	TCCGGA	2 cut(s)	267, 605
AoxI	GGCC	1 cut(s)	136
ApeKI	GCWGC	1 cut(s)	98
ApoI	RAATTY	1 cut(s)	302
AsuC2I	CCSGG	2 cut(s)	103, 111
AsuHPI	GGTGA	3 cut(s)	386, 431, 491
BamHI	GGATCC	2 cut(s)	287, 308
BanII	GRGCYC	1 cut(s)	591
BauI	CACGAG	1 cut(s)	240
BbsI	GAAGAC	1 cut(s)	509
Bbv12I	GWGCWC	2 cut(s)	477, 591
BbvI	GCAGC	1 cut(s)	110
BccI	CCATC	5 cut(s)	19, 183, 347, 374, 610
BceAI	ACGGC	1 cut(s)	169
BcgI	CGANNNNNNTGC	2 cut(s)	322, 356
BciT130I	CCWGG	2 cut(s)	293, 443
BcnI	CCSGG	2 cut(s)	103, 111
BcoDI	GTCTC	2 cut(s)	176, 446
BglI	GCCNNNNNGGC	1 cut(s)	190
BisI	GCNGC	2 cut(s)	99, 612
BlpI	GCTNAGC	1 cut(s)	590
BlsI	GCNGC	2 cut(s)	100, 613
Bme1390I	CCNGG	4 cut(s)	103, 111, 293, 443
BmiI	GGNNCC	6 cut(s)	6, 224, 289, 310, 358, 610
BmrFI	CCNGG	4 cut(s)	103, 111, 293, 443
BpiI	GAAGAC	1 cut(s)	509
Bpu10I	CCTNAGC	2 cut(s)	471, 550
Bpu1102I	GCTNAGC	1 cut(s)	590
BpuEI	CTTGAG	2 cut(s)	218, 605
BpuMI	CCSGG	2 cut(s)	103, 111
Bsa29I	ATCGAT	1 cut(s)	342
BsaJI	CCNNGG	4 cut(s)	291, 400, 490, 513
BsaWI	WCCGGW	3 cut(s)	267, 542, 605
Bsc4I	CCNNNNNNNGG	1 cut(s)	476
Bse1I	ACTGG	2 cut(s)	143, 376
BseAI	TCCGGA	2 cut(s)	267, 605
BseBI	CCWGG	2 cut(s)	293, 443
BseCI	ATCGAT	1 cut(s)	342
BseDI	CCNNGG	4 cut(s)	291, 400, 490, 513
BseGI	GGATG	3 cut(s)	486, 509, 602
BseLI	CCNNNNNNNGG	1 cut(s)	476
BseMII	CTCAG	4 cut(s)	66, 462, 564, 604
BseNI	ACTGG	2 cut(s)	143, 376
BseRI	GAGGAG	3 cut(s)	92, 444, 447
BseXI	GCAGC	1 cut(s)	110
BseYI	CCCAGC	1 cut(s)	63
BshFI	GGCC	1 cut(s)	138
BshVI	ATCGAT	1 cut(s)	342
BsiHKAI	GWGCWC	2 cut(s)	477, 591
BsiSI	CCGG	5 cut(s)	102, 110, 268, 543, 606
BslFI	GGGAC	1 cut(s)	118
BslI	CCNNNNNNNGG	1 cut(s)	476
BsmAI	GTCTC	2 cut(s)	176, 446
BsmFI	GGGAC	1 cut(s)	118
BsnI	GGCC	1 cut(s)	138
Bsp1286I	GDGCHC	2 cut(s)	477, 591
Bsp13I	TCCGGA	2 cut(s)	267, 605
Bsp1720I	GCTNAGC	1 cut(s)	590
BspACI	CCGC	2 cut(s)	519, 612
BspANI	GGCC	1 cut(s)	138
BspCNI	CTCAG	4 cut(s)	67, 463, 563, 603
BspDI	ATCGAT	1 cut(s)	342
BspEI	TCCGGA	2 cut(s)	267, 605
BspLI	GGNNCC	6 cut(s)	6, 224, 289, 310, 358, 610
BspPI	GGATC	7 cut(s)	282, 295, 303, 303, 316, 330, 391
BsrI	ACTGG	2 cut(s)	143, 376
BssECI	CCNNGG	4 cut(s)	291, 400, 490, 513
BssSI	CACGAG	1 cut(s)	240
BssT1I	CCWWGG	2 cut(s)	400, 490
Bst2BI	CACGAG	1 cut(s)	240
Bst2UI	CCWGG	2 cut(s)	293, 443
Bst4CI	ACNGT	2 cut(s)	479, 566
Bst6I	CTCTTC	1 cut(s)	462
BstDEI	CTNAG	4 cut(s)	75, 471, 550, 590
BstEII	GGTNACC	1 cut(s)	494
BstF5I	GGATG	3 cut(s)	486, 509, 602
BstMAI	GTCTC	2 cut(s)	176, 446
BstMWI	GCNNNNNNNGC	1 cut(s)	190
BstNI	CCWGG	2 cut(s)	293, 443
BstPI	GGTNACC	1 cut(s)	494
BstSCI	CCNGG	4 cut(s)	101, 109, 291, 441
BstV1I	GCAGC	1 cut(s)	110
BstV2I	GAAGAC	1 cut(s)	509
BstX2I	RGATCY	4 cut(s)	287, 295, 308, 335
BstYI	RGATCY	4 cut(s)	287, 295, 308, 335
Bsu15I	ATCGAT	1 cut(s)	342
BsuRI	GGCC	1 cut(s)	138
BsuTUI	ATCGAT	1 cut(s)	342
BtsCI	GGATG	3 cut(s)	486, 509, 602
BtsIMutI	CAGTG	4 cut(s)	72, 360, 369, 571
ClaI	ATCGAT	1 cut(s)	342
CviAII	CATG	1 cut(s)	418
DdeI	CTNAG	4 cut(s)	75, 471, 550, 590
Eam1104I	CTCTTC	1 cut(s)	462
EarI	CTCTTC	1 cut(s)	462
Ecl136II	GAGCTC	1 cut(s)	589
Eco130I	CCWWGG	2 cut(s)	400, 490
Eco24I	GRGCYC	1 cut(s)	591
Eco53kI	GAGCTC	1 cut(s)	589
Eco57I	CTGAAG	1 cut(s)	200
Eco91I	GGTNACC	1 cut(s)	494
EcoICRI	GAGCTC	1 cut(s)	589
EcoO65I	GGTNACC	1 cut(s)	494
EcoRII	CCWGG	2 cut(s)	291, 441
EcoT14I	CCWWGG	2 cut(s)	400, 490
EcoT38I	GRGCYC	1 cut(s)	591
ErhI	CCWWGG	2 cut(s)	400, 490
FaeI	CATG	1 cut(s)	421
FaiI	YATR	2 cut(s)	189, 419
FaqI	GGGAC	1 cut(s)	118
FatI	CATG	1 cut(s)	417
Fnu4HI	GCNGC	2 cut(s)	99, 612
FokI	GGATG	3 cut(s)	473, 496, 589
FriOI	GRGCYC	1 cut(s)	591
Fsp4HI	GCNGC	2 cut(s)	99, 612
GluI	GCNGC	2 cut(s)	99, 612
GsaI	CCCAGC	1 cut(s)	67
HaeIII	GGCC	1 cut(s)	138
HapII	CCGG	5 cut(s)	102, 110, 268, 543, 606
Hin1II	CATG	1 cut(s)	421
HinfI	GANTC	6 cut(s)	106, 157, 165, 247, 365, 454
HpaII	CCGG	5 cut(s)	102, 110, 268, 543, 606
HphI	GGTGA	3 cut(s)	386, 431, 491
Hpy188I	TCNGA	3 cut(s)	180, 252, 514
Hpy188III	TCNNGA	7 cut(s)	199, 226, 242, 268, 451, 584, 606
Hpy99I	CGWCG	1 cut(s)	429
HpyAV	CCTTC	2 cut(s)	253, 320
HpyCH4III	ACNGT	2 cut(s)	479, 566
HpyCH4IV	ACGT	1 cut(s)	210
HpyCH4V	TGCA	1 cut(s)	19
HpyF10VI	GCNNNNNNNGC	1 cut(s)	190
HpyF3I	CTNAG	4 cut(s)	75, 471, 550, 590
HpySE526I	ACGT	1 cut(s)	210
Hsp92II	CATG	1 cut(s)	421
Kpn2I	TCCGGA	2 cut(s)	267, 605
LmnI	GCTCC	2 cut(s)	28, 608
Lsp1109I	GCAGC	1 cut(s)	110
MaeII	ACGT	1 cut(s)	210
MaeIII	GTNAC	5 cut(s)	145, 405, 494, 533, 557
MboII	GAAGA	2 cut(s)	449, 514
MflI	RGATCY	4 cut(s)	287, 295, 308, 335
MhlI	GDGCHC	2 cut(s)	477, 591
MluCI	AATT	1 cut(s)	302
MlyI	GAGTC	3 cut(s)	100, 256, 448
MnlI	CCTC	9 cut(s)	70, 73, 77, 242, 422, 425, 439, 508, 605
MroI	TCCGGA	2 cut(s)	267, 605
MseI	TTAA	1 cut(s)	348
MspA1I	CMGCKG	1 cut(s)	614
MspI	CCGG	5 cut(s)	102, 110, 268, 543, 606
MspR9I	CCNGG	4 cut(s)	103, 111, 293, 443
MvaI	CCWGG	2 cut(s)	293, 443
MwoI	GCNNNNNNNGC	1 cut(s)	190
NciI	CCSGG	2 cut(s)	103, 111
NlaIII	CATG	1 cut(s)	421
NlaIV	GGNNCC	6 cut(s)	6, 224, 289, 310, 358, 610
PfeI	GAWTC	3 cut(s)	157, 165, 365
PfoI	TCCNGGA	1 cut(s)	109
PkrI	GCNGC	2 cut(s)	100, 613
PleI	GAGTC	3 cut(s)	100, 255, 448
PpsI	GAGTC	3 cut(s)	100, 255, 448
Psp124BI	GAGCTC	1 cut(s)	591
Psp1406I	AACGTT	1 cut(s)	210
Psp6I	CCWGG	2 cut(s)	291, 441
PspEI	GGTNACC	1 cut(s)	494
PspFI	CCCAGC	1 cut(s)	63
PspGI	CCWGG	2 cut(s)	291, 441
PspN4I	GGNNCC	6 cut(s)	6, 224, 289, 310, 358, 610
PsuI	RGATCY	4 cut(s)	287, 295, 308, 335
SacI	GAGCTC	1 cut(s)	591
SaqAI	TTAA	1 cut(s)	348
SatI	GCNGC	2 cut(s)	99, 612
SchI	GAGTC	3 cut(s)	100, 256, 448
ScrFI	CCNGG	4 cut(s)	103, 111, 293, 443
SduI	GDGCHC	2 cut(s)	477, 591
SetI	ASST	8 cut(s)	33, 132, 213, 234, 331, 450, 527, 591
SmlI	CTYRAG	2 cut(s)	233, 584
SmoI	CTYRAG	2 cut(s)	233, 584
Sse9I	AATT	1 cut(s)	302
SsiI	CCGC	2 cut(s)	519, 612
SstI	GAGCTC	1 cut(s)	591
StyD4I	CCNGG	4 cut(s)	101, 109, 291, 441
StyI	CCWWGG	2 cut(s)	400, 490
TaaI	ACNGT	2 cut(s)	479, 566
TaiI	ACGT	1 cut(s)	213
TaqI	TCGA	4 cut(s)	198, 342, 390, 450
TasI	AATT	1 cut(s)	302
TauI	GCSGC	1 cut(s)	614
TfiI	GAWTC	3 cut(s)	157, 165, 365
Tru1I	TTAA	1 cut(s)	348
Tru9I	TTAA	1 cut(s)	348
TscAI	CASTG	4 cut(s)	79, 367, 376, 571
TseI	GCWGC	1 cut(s)	98
TspDTI	ATGAA	1 cut(s)	406
TspGWI	ACGGA	1 cut(s)	65
TspRI	CASTG	4 cut(s)	79, 367, 376, 571
XapI	RAATTY	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.