Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001211.1

Orthogroup ID

OG0031121

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2615

Gene Structure 2615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 481 bp

agactattcgaaaacatatgctcgagctaagtattacgatgaagcgaaaccttggaatgaaaggtgtgatgtcgcgtttccttttgctacccagaatgaaattgatcagtctgatgccatgaatctggtcaattcaggttgtcgtatactagtagaaggttcaaatatgccgtgtacaccagaggctgttgatgttctaagaaaatctaatgttctaattgctcctgcagtggctgctggtgctggtggggtagttgctggagaatttgaattgaaccatgagtgtaattcagtgaactggtcaccgcaggactttgagtctaagctacaggaagcaataaaacaaacttaccagagatcccttaaagcagcgcttgactttggctactccaaagaaagtcctgagtatttggtacatggagcagtcatttctgcttttctgactcttgctcaagctatgacggatcagggttgtgtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004353 GO:0004354 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006536 GO:0006537 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009987 GO:0016053 GO:0016491 GO:0016638 GO:0016639 GO:0019752 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0055114 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00910 ko01100 map00220 map00250 map00910 map01100

Pfam Domains

Protein Families

ELFV_dehydrog ELFV_dehydrog_N

Protein Analysis

159

Amino Acids

17.41

Weight (kDa)

4.69

Isoelectric Point (pI)

46.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELFV_dehydrog	PF00208	7 - 157	1.7e-37	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0031121)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001211.1_g000001 Rmu_sc0033233.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	146
AccII	CGCG	1 cut(s)	75
AciI	CCGC	1 cut(s)	306
AclWI	GGATC	2 cut(s)	352, 472
AcsI	RAATTY	1 cut(s)	264
AfaI	GTAC	2 cut(s)	176, 415
AfeI	AGCGCT	1 cut(s)	373
AgsI	TTSAA	3 cut(s)	163, 270, 275
AhdI	GACNNNNNGTC	1 cut(s)	317
AhlI	ACTAGT	1 cut(s)	149
AluBI	AGCT	3 cut(s)	27, 326, 456
AluI	AGCT	3 cut(s)	27, 326, 456
AlwI	GGATC	2 cut(s)	352, 472
AlwNI	CAGNNNCTG	2 cut(s)	186, 234
Ama87I	CYCGRG	1 cut(s)	22
Aor51HI	AGCGCT	1 cut(s)	373
ApeKI	GCWGC	2 cut(s)	234, 369
ApoI	RAATTY	1 cut(s)	264
AspLEI	GCGC	1 cut(s)	374
AsuHPI	GGTGA	1 cut(s)	295
AsuII	TTCGAA	1 cut(s)	9
AvaI	CYCGRG	1 cut(s)	22
BbvI	GCAGC	2 cut(s)	221, 381
BceAI	ACGGC	1 cut(s)	155
BclI	TGATCA	1 cut(s)	104
BcuI	ACTAGT	1 cut(s)	149
BfaI	CTAG	1 cut(s)	150
BfmI	CTRYAG	2 cut(s)	226, 327
BfoI	RGCGCY	1 cut(s)	375
BisI	GCNGC	2 cut(s)	235, 370
BlsI	GCNGC	2 cut(s)	236, 371
BmeRI	GACNNNNNGTC	1 cut(s)	317
BmeT110I	CYCGRG	1 cut(s)	22
BmsI	GCATC	1 cut(s)	104
BpmI	CTGGAG	1 cut(s)	280
Bpu14I	TTCGAA	1 cut(s)	9
BpuEI	CTTGAG	1 cut(s)	436
BsaJI	CCNNGG	1 cut(s)	51
Bse1I	ACTGG	1 cut(s)	303
BseDI	CCNNGG	1 cut(s)	51
BseMII	CTCAG	1 cut(s)	394
BseNI	ACTGG	1 cut(s)	303
BseXI	GCAGC	2 cut(s)	221, 381
Bsh1236I	CGCG	1 cut(s)	75
BsiHKCI	CYCGRG	1 cut(s)	22
BsoBI	CYCGRG	1 cut(s)	22
Bsp119I	TTCGAA	1 cut(s)	9
Bsp1407I	TGTACA	1 cut(s)	174
Bsp143I	GATC	3 cut(s)	104, 357, 464
BspACI	CCGC	1 cut(s)	306
BspCNI	CTCAG	1 cut(s)	395
BspFNI	CGCG	1 cut(s)	75
BspMAI	CTGCAG	1 cut(s)	230
BspPI	GGATC	2 cut(s)	352, 472
BspT104I	TTCGAA	1 cut(s)	9
BsrGI	TGTACA	1 cut(s)	174
BsrI	ACTGG	1 cut(s)	303
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	3 cut(s)	104, 357, 464
BssNAI	GTATAC	1 cut(s)	147
BssT1I	CCWWGG	1 cut(s)	51
Bst1107I	GTATAC	1 cut(s)	147
BstAPI	GCANNNNNTGC	1 cut(s)	234
BstAUI	TGTACA	1 cut(s)	174
BstBI	TTCGAA	1 cut(s)	9
BstDEI	CTNAG	4 cut(s)	28, 198, 322, 403
BstEII	GGTNACC	1 cut(s)	301
BstFNI	CGCG	1 cut(s)	75
BstH2I	RGCGCY	1 cut(s)	375
BstHHI	GCGC	1 cut(s)	374
BstKTI	GATC	3 cut(s)	107, 360, 467
BstMBI	GATC	3 cut(s)	104, 357, 464
BstMWI	GCNNNNNNNGC	2 cut(s)	234, 240
BstPI	GGTNACC	1 cut(s)	301
BstSFI	CTRYAG	2 cut(s)	226, 327
BstUI	CGCG	1 cut(s)	75
BstV1I	GCAGC	2 cut(s)	221, 381
BstX2I	RGATCY	1 cut(s)	357
BstXI	CCANNNNNNTGG	1 cut(s)	125
BstYI	RGATCY	1 cut(s)	357
BstZ17I	GTATAC	1 cut(s)	147
BtsI	GCAGTG	1 cut(s)	235
BtsIMutI	CAGTG	2 cut(s)	235, 298
CaiI	CAGNNNCTG	2 cut(s)	186, 234
CfoI	GCGC	1 cut(s)	374
Csp6I	GTAC	2 cut(s)	175, 414
CviAII	CATG	3 cut(s)	119, 279, 417
CviJI	RGCY	6 cut(s)	27, 186, 234, 326, 385, 456
CviKI_1	RGCY	6 cut(s)	27, 186, 234, 326, 385, 456
CviQI	GTAC	2 cut(s)	175, 414
DdeI	CTNAG	4 cut(s)	28, 198, 322, 403
DpnI	GATC	3 cut(s)	106, 359, 466
DpnII	GATC	3 cut(s)	104, 357, 464
DriI	GACNNNNNGTC	1 cut(s)	317
Eam1105I	GACNNNNNGTC	1 cut(s)	317
Eco130I	CCWWGG	1 cut(s)	51
Eco47III	AGCGCT	1 cut(s)	373
Eco88I	CYCGRG	1 cut(s)	22
Eco91I	GGTNACC	1 cut(s)	301
EcoO65I	GGTNACC	1 cut(s)	301
EcoT14I	CCWWGG	1 cut(s)	51
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	3 cut(s)	122, 282, 420
FaiI	YATR	9 cut(s)	17, 19, 120, 147, 168, 280, 418, 459, 479
FalI	AAGNNNNNCTT	2 cut(s)	358, 390
FatI	CATG	3 cut(s)	118, 278, 416
FauNDI	CATATG	1 cut(s)	17
FbaI	TGATCA	1 cut(s)	104
FblI	GTMKAC	1 cut(s)	146
Fnu4HI	GCNGC	2 cut(s)	235, 370
Fsp4HI	GCNGC	2 cut(s)	235, 370
FspBI	CTAG	1 cut(s)	150
GlaI	GCGC	1 cut(s)	373
GluI	GCNGC	2 cut(s)	235, 370
GsuI	CTGGAG	1 cut(s)	280
HaeII	RGCGCY	1 cut(s)	375
HhaI	GCGC	1 cut(s)	374
Hin1II	CATG	3 cut(s)	122, 282, 420
Hin6I	GCGC	1 cut(s)	372
HinP1I	GCGC	1 cut(s)	372
HinfI	GANTC	3 cut(s)	122, 318, 443
HphI	GGTGA	1 cut(s)	295
Hpy166II	GTNNAC	4 cut(s)	147, 175, 177, 296
Hpy188I	TCNGA	2 cut(s)	113, 442
Hpy188III	TCNNGA	1 cut(s)	402
Hpy8I	GTNNAC	4 cut(s)	147, 175, 177, 296
HpyAV	CCTTC	1 cut(s)	150
HpyCH4V	TGCA	1 cut(s)	228
HpyF10VI	GCNNNNNNNGC	2 cut(s)	234, 240
HpyF3I	CTNAG	4 cut(s)	28, 198, 322, 403
Hsp92II	CATG	3 cut(s)	122, 282, 420
HspAI	GCGC	1 cut(s)	372
Ksp22I	TGATCA	1 cut(s)	104
Kzo9I	GATC	3 cut(s)	104, 357, 464
LmnI	GCTCC	2 cut(s)	227, 420
Lsp1109I	GCAGC	2 cut(s)	221, 381
LweI	GCATC	1 cut(s)	104
MaeI	CTAG	1 cut(s)	150
MaeIII	GTNAC	1 cut(s)	301
MalI	GATC	3 cut(s)	106, 359, 466
MboI	GATC	3 cut(s)	104, 357, 464
MflI	RGATCY	1 cut(s)	357
MluCI	AATT	6 cut(s)	100, 131, 217, 264, 270, 287
MlyI	GAGTC	2 cut(s)	327, 437
MnlI	CCTC	1 cut(s)	176
MseI	TTAA	1 cut(s)	364
MvnI	CGCG	1 cut(s)	75
MwoI	GCNNNNNNNGC	2 cut(s)	234, 240
NdeI	CATATG	1 cut(s)	17
NdeII	GATC	3 cut(s)	104, 357, 464
NlaIII	CATG	3 cut(s)	122, 282, 420
NmuCI	GTSAC	1 cut(s)	301
NspV	TTCGAA	1 cut(s)	9
PaeR7I	CTCGAG	1 cut(s)	22
PfeI	GAWTC	1 cut(s)	122
PkrI	GCNGC	2 cut(s)	236, 371
PleI	GAGTC	2 cut(s)	326, 437
PpsI	GAGTC	2 cut(s)	326, 437
PspEI	GGTNACC	1 cut(s)	301
PspXI	VCTCGAGB	1 cut(s)	22
PstI	CTGCAG	1 cut(s)	230
PstNI	CAGNNNCTG	2 cut(s)	186, 234
PsuI	RGATCY	1 cut(s)	357
RsaI	GTAC	2 cut(s)	176, 415
RsaNI	GTAC	2 cut(s)	175, 414
SaqAI	TTAA	1 cut(s)	364
SatI	GCNGC	2 cut(s)	235, 370
Sau3AI	GATC	3 cut(s)	104, 357, 464
SchI	GAGTC	2 cut(s)	327, 437
SetI	ASST	7 cut(s)	29, 53, 66, 140, 161, 328, 458
SfaNI	GCATC	1 cut(s)	104
SfcI	CTRYAG	2 cut(s)	226, 327
Sfr274I	CTCGAG	1 cut(s)	22
SfuI	TTCGAA	1 cut(s)	9
SlaI	CTCGAG	1 cut(s)	22
SmlI	CTYRAG	2 cut(s)	22, 451
SmoI	CTYRAG	2 cut(s)	22, 451
SpeI	ACTAGT	1 cut(s)	149
Sse9I	AATT	6 cut(s)	100, 131, 217, 264, 270, 287
SsiI	CCGC	1 cut(s)	306
SspMI	CTAG	1 cut(s)	150
StyI	CCWWGG	1 cut(s)	51
TaqI	TCGA	2 cut(s)	9, 23
TasI	AATT	6 cut(s)	100, 131, 217, 264, 270, 287
TatI	WGTACW	1 cut(s)	174
TfiI	GAWTC	1 cut(s)	122
Tru1I	TTAA	1 cut(s)	364
Tru9I	TTAA	1 cut(s)	364
TscAI	CASTG	2 cut(s)	235, 298
TseFI	GTSAC	1 cut(s)	301
TseI	GCWGC	2 cut(s)	234, 369
Tsp45I	GTSAC	1 cut(s)	301
TspDTI	ATGAA	4 cut(s)	55, 73, 112, 135
TspGWI	ACGGA	1 cut(s)	477
TspRI	CASTG	2 cut(s)	235, 298
XapI	RAATTY	1 cut(s)	264
XhoI	CTCGAG	1 cut(s)	22
XmiI	GTMKAC	1 cut(s)	146
XspI	CTAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.