Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033233.1

Orthogroup ID

OG0031121

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 804

Gene Structure 804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033233.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 332 bp

gttatttggtggatgaagaagggtttgattatgacaaaatcgcacttctgagagaaataaaaactcaacagagaagtttgagagactattcgaaaacatatgctcgagctaagtattacgatgaagcgaaaccttggaatgaaaggtgtgatgtcgcgtttccttgtgctacccagaatgaaattgatcagtctgatgccatgaatctggtcaattcaggttgtcgtatactagtagaaggttcaaatatgccgtgtacaccagaggctgttgatgttctaagaaaatctaatgttctaattgctcctgcagtggctgctggtgctggtggg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004353 GO:0004354 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006536 GO:0006537 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009987 GO:0016053 GO:0016491 GO:0016638 GO:0016639 GO:0019752 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0055114 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00910 ko01100 map00220 map00250 map00910 map01100

Pfam Domains

Protein Families

ELFV_dehydrog ELFV_dehydrog_N

Protein Analysis

110

Amino Acids

12.22

Weight (kDa)

4.78

Isoelectric Point (pI)

50.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031121)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001211.1_g000001 Rmu_sc0033233.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	228
AccII	CGCG	1 cut(s)	157
AfaI	GTAC	1 cut(s)	258
AgsI	TTSAA	1 cut(s)	245
AhlI	ACTAGT	1 cut(s)	231
AluBI	AGCT	1 cut(s)	109
AluI	AGCT	1 cut(s)	109
Alw26I	GTCTC	1 cut(s)	77
AlwNI	CAGNNNCTG	2 cut(s)	268, 316
Ama87I	CYCGRG	1 cut(s)	104
ApeKI	GCWGC	1 cut(s)	316
AsuII	TTCGAA	1 cut(s)	91
AvaI	CYCGRG	1 cut(s)	104
BbvI	GCAGC	1 cut(s)	303
BceAI	ACGGC	1 cut(s)	237
BclI	TGATCA	1 cut(s)	186
BcoDI	GTCTC	1 cut(s)	77
BcuI	ACTAGT	1 cut(s)	231
BfaI	CTAG	1 cut(s)	232
BfmI	CTRYAG	1 cut(s)	308
BisI	GCNGC	1 cut(s)	317
BlsI	GCNGC	1 cut(s)	318
BmeT110I	CYCGRG	1 cut(s)	104
BmsI	GCATC	1 cut(s)	186
Bpu14I	TTCGAA	1 cut(s)	91
BsaJI	CCNNGG	1 cut(s)	133
BseDI	CCNNGG	1 cut(s)	133
BseGI	GGATG	1 cut(s)	18
BseMII	CTCAG	1 cut(s)	40
BseXI	GCAGC	1 cut(s)	303
Bsh1236I	CGCG	1 cut(s)	157
BsiHKCI	CYCGRG	1 cut(s)	104
BsmAI	GTCTC	1 cut(s)	77
BsoBI	CYCGRG	1 cut(s)	104
Bsp119I	TTCGAA	1 cut(s)	91
Bsp1407I	TGTACA	1 cut(s)	256
Bsp143I	GATC	1 cut(s)	186
BspCNI	CTCAG	1 cut(s)	41
BspFNI	CGCG	1 cut(s)	157
BspMAI	CTGCAG	1 cut(s)	312
BspT104I	TTCGAA	1 cut(s)	91
BsrGI	TGTACA	1 cut(s)	256
BssECI	CCNNGG	1 cut(s)	133
BssMI	GATC	1 cut(s)	186
BssNAI	GTATAC	1 cut(s)	229
BssT1I	CCWWGG	1 cut(s)	133
Bst1107I	GTATAC	1 cut(s)	229
BstAPI	GCANNNNNTGC	1 cut(s)	316
BstAUI	TGTACA	1 cut(s)	256
BstBI	TTCGAA	1 cut(s)	91
BstDEI	CTNAG	3 cut(s)	49, 110, 280
BstF5I	GGATG	1 cut(s)	18
BstFNI	CGCG	1 cut(s)	157
BstKTI	GATC	1 cut(s)	189
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	1 cut(s)	186
BstMWI	GCNNNNNNNGC	2 cut(s)	316, 322
BstSFI	CTRYAG	1 cut(s)	308
BstUI	CGCG	1 cut(s)	157
BstV1I	GCAGC	1 cut(s)	303
BstXI	CCANNNNNNTGG	1 cut(s)	207
BstZ17I	GTATAC	1 cut(s)	229
BtsCI	GGATG	1 cut(s)	18
BtsI	GCAGTG	1 cut(s)	317
BtsIMutI	CAGTG	1 cut(s)	317
CaiI	CAGNNNCTG	2 cut(s)	268, 316
Csp6I	GTAC	1 cut(s)	257
CviAII	CATG	1 cut(s)	201
CviJI	RGCY	3 cut(s)	109, 268, 316
CviKI_1	RGCY	3 cut(s)	109, 268, 316
CviQI	GTAC	1 cut(s)	257
DdeI	CTNAG	3 cut(s)	49, 110, 280
DpnI	GATC	1 cut(s)	188
DpnII	GATC	1 cut(s)	186
Eco130I	CCWWGG	1 cut(s)	133
Eco88I	CYCGRG	1 cut(s)	104
EcoT14I	CCWWGG	1 cut(s)	133
ErhI	CCWWGG	1 cut(s)	133
FaeI	CATG	1 cut(s)	204
FaiI	YATR	6 cut(s)	32, 99, 101, 202, 229, 250
FatI	CATG	1 cut(s)	200
FauNDI	CATATG	1 cut(s)	99
FbaI	TGATCA	1 cut(s)	186
FblI	GTMKAC	1 cut(s)	228
Fnu4HI	GCNGC	1 cut(s)	317
FokI	GGATG	1 cut(s)	25
Fsp4HI	GCNGC	1 cut(s)	317
FspBI	CTAG	1 cut(s)	232
GluI	GCNGC	1 cut(s)	317
Hin1II	CATG	1 cut(s)	204
HinfI	GANTC	1 cut(s)	204
Hpy166II	GTNNAC	3 cut(s)	229, 257, 259
Hpy188I	TCNGA	2 cut(s)	50, 195
Hpy8I	GTNNAC	3 cut(s)	229, 257, 259
HpyAV	CCTTC	2 cut(s)	13, 232
HpyCH4V	TGCA	1 cut(s)	310
HpyF10VI	GCNNNNNNNGC	2 cut(s)	316, 322
HpyF3I	CTNAG	3 cut(s)	49, 110, 280
Hsp92II	CATG	1 cut(s)	204
Ksp22I	TGATCA	1 cut(s)	186
Kzo9I	GATC	1 cut(s)	186
LmnI	GCTCC	1 cut(s)	309
LpnPI	CCDG	7 cut(s)	187, 193, 203, 275, 305, 311, 320
Lsp1109I	GCAGC	1 cut(s)	303
LweI	GCATC	1 cut(s)	186
MaeI	CTAG	1 cut(s)	232
MalI	GATC	1 cut(s)	188
MboI	GATC	1 cut(s)	186
MboII	GAAGA	1 cut(s)	28
MluCI	AATT	3 cut(s)	182, 213, 299
MnlI	CCTC	1 cut(s)	258
MvnI	CGCG	1 cut(s)	157
MwoI	GCNNNNNNNGC	2 cut(s)	316, 322
NdeI	CATATG	1 cut(s)	99
NdeII	GATC	1 cut(s)	186
NlaIII	CATG	1 cut(s)	204
NspV	TTCGAA	1 cut(s)	91
PaeR7I	CTCGAG	1 cut(s)	104
PfeI	GAWTC	1 cut(s)	204
PkrI	GCNGC	1 cut(s)	318
PspXI	VCTCGAGB	1 cut(s)	104
PstI	CTGCAG	1 cut(s)	312
PstNI	CAGNNNCTG	2 cut(s)	268, 316
RsaI	GTAC	1 cut(s)	258
RsaNI	GTAC	1 cut(s)	257
SatI	GCNGC	1 cut(s)	317
Sau3AI	GATC	1 cut(s)	186
SetI	ASST	5 cut(s)	111, 135, 148, 222, 243
SfaNI	GCATC	1 cut(s)	186
SfcI	CTRYAG	1 cut(s)	308
Sfr274I	CTCGAG	1 cut(s)	104
SfuI	TTCGAA	1 cut(s)	91
SlaI	CTCGAG	1 cut(s)	104
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
SpeI	ACTAGT	1 cut(s)	231
Sse9I	AATT	3 cut(s)	182, 213, 299
SspMI	CTAG	1 cut(s)	232
StyI	CCWWGG	1 cut(s)	133
TaqI	TCGA	2 cut(s)	91, 105
TasI	AATT	3 cut(s)	182, 213, 299
TatI	WGTACW	1 cut(s)	256
TfiI	GAWTC	1 cut(s)	204
TscAI	CASTG	1 cut(s)	317
TseI	GCWGC	1 cut(s)	316
TspDTI	ATGAA	5 cut(s)	29, 137, 155, 194, 217
TspRI	CASTG	1 cut(s)	317
XhoI	CTCGAG	1 cut(s)	104
XmiI	GTMKAC	1 cut(s)	228
XspI	CTAG	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.