Rmu_sc0001380.1_g000001

Zeta toxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001380.1
OG0031127
Physical Location & Seq
Reverse (-)
2 .. 518
517 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 287 bp
atgcagcagcagcagcagcagcaccaccaccaccaccatgatggtgggcatgagacaatcaagtacatcaagcacctactggccgcctcgtttgttagtggtgcagcggcggtcaccgccccttatcaccagaaaaaggcctcggccttgacagctccacatgaaatctttccaagtctcaacaggacagactccggccgtgttggaaacatcgagagattctccgactatgttgctaggcagctaggattttcggacgcaaatgagtgccccaagatgtgcaagtt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Zeta_toxin

Protein Analysis

95

Amino Acids

10.62

Weight (kDa)

8.67

Isoelectric Point (pI)

50.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031127)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001380.1_g000001 Rmu_sc0038911.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 84, 107, 110, 117
AcoI YGGCCR 2 cut(s) 81, 196
AfaI GTAC 1 cut(s) 65
AfiI CCNNNNNNNGG 1 cut(s) 136
AluBI AGCT 2 cut(s) 155, 244
AluI AGCT 2 cut(s) 155, 244
Alw26I GTCTC 2 cut(s) 47, 182
AoxI GGCC 4 cut(s) 81, 138, 144, 196
ApeKI GCWGC 8 cut(s) 4, 7, 10, 13, 16, 19, 104, 241
Asp700I GAANNNNTTC 1 cut(s) 168
AsuHPI GGTGA 2 cut(s) 106, 119
BaeGI GKGCMC 1 cut(s) 272
BbvI GCAGC 8 cut(s) 16, 19, 22, 25, 28, 31, 116, 253
BccI CCATC 1 cut(s) 35
BceAI ACGGC 1 cut(s) 183
BcgI CGANNNNNNTGC 2 cut(s) 215, 249
BcoDI GTCTC 2 cut(s) 47, 182
BfaI CTAG 2 cut(s) 237, 245
BplI GAGNNNNNCTC 2 cut(s) 206, 238
BsaJI CCNNGG 1 cut(s) 141
Bsc4I CCNNNNNNNGG 1 cut(s) 136
Bse1I ACTGG 1 cut(s) 84
BseDI CCNNGG 1 cut(s) 141
BseLI CCNNNNNNNGG 1 cut(s) 136
BseNI ACTGG 1 cut(s) 84
BseSI GKGCMC 1 cut(s) 272
BseX3I CGGCCG 1 cut(s) 196
BseXI GCAGC 8 cut(s) 16, 19, 22, 25, 28, 31, 116, 253
BsgI GTGCAG 1 cut(s) 123
Bsh1285I CGRYCG 1 cut(s) 199
BshFI GGCC 4 cut(s) 83, 140, 146, 198
BsiEI CGRYCG 1 cut(s) 199
BsiSI CCGG 1 cut(s) 195
BslI CCNNNNNNNGG 1 cut(s) 136
BsmAI GTCTC 2 cut(s) 47, 182
BsnI GGCC 4 cut(s) 83, 140, 146, 198
Bsp1286I GDGCHC 1 cut(s) 272
BspACI CCGC 4 cut(s) 84, 107, 110, 117
BspANI GGCC 4 cut(s) 83, 140, 146, 198
BsrI ACTGG 1 cut(s) 84
BssECI CCNNGG 1 cut(s) 141
BstEII GGTNACC 1 cut(s) 112
BstMAI GTCTC 2 cut(s) 47, 182
BstMCI CGRYCG 1 cut(s) 199
BstMWI GCNNNNNNNGC 6 cut(s) 10, 13, 16, 19, 116, 152
BstPI GGTNACC 1 cut(s) 112
BstSLI GKGCMC 1 cut(s) 272
BstV1I GCAGC 8 cut(s) 16, 19, 22, 25, 28, 31, 116, 253
BstXI CCANNNNNNTGG 2 cut(s) 41, 44
BstZI CGGCCG 1 cut(s) 196
BsuRI GGCC 4 cut(s) 83, 140, 146, 198
CseI GACGC 1 cut(s) 266
Csp6I GTAC 1 cut(s) 64
CviAII CATG 3 cut(s) 38, 50, 161
CviJI RGCY 6 cut(s) 83, 140, 146, 155, 198, 244
CviKI_1 RGCY 6 cut(s) 83, 140, 146, 155, 198, 244
CviQI GTAC 1 cut(s) 64
EaeI YGGCCR 2 cut(s) 81, 196
EagI CGGCCG 1 cut(s) 196
EclXI CGGCCG 1 cut(s) 196
Eco147I AGGCCT 1 cut(s) 140
Eco52I CGGCCG 1 cut(s) 196
Eco91I GGTNACC 1 cut(s) 112
EcoO65I GGTNACC 1 cut(s) 112
FaeI CATG 3 cut(s) 41, 53, 164
FaiI YATR 4 cut(s) 39, 51, 162, 231
FatI CATG 3 cut(s) 37, 49, 160
FspBI CTAG 2 cut(s) 237, 245
HaeIII GGCC 4 cut(s) 83, 140, 146, 198
HapII CCGG 1 cut(s) 195
HgaI GACGC 1 cut(s) 266
Hin1II CATG 3 cut(s) 41, 53, 164
HinfI GANTC 2 cut(s) 191, 219
HpaII CCGG 1 cut(s) 195
HphI GGTGA 2 cut(s) 106, 119
Hpy188I TCNGA 2 cut(s) 226, 256
Hpy188III TCNNGA 1 cut(s) 214
HpyCH4V TGCA 3 cut(s) 4, 104, 282
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 13, 16, 19, 116, 152
Hsp92II CATG 3 cut(s) 41, 53, 164
LmnI GCTCC 1 cut(s) 160
LpnPI CCDG 4 cut(s) 65, 143, 169, 208
Lsp1109I GCAGC 8 cut(s) 16, 19, 22, 25, 28, 31, 116, 253
MaeI CTAG 2 cut(s) 237, 245
MaeIII GTNAC 1 cut(s) 112
MhlI GDGCHC 1 cut(s) 272
MlyI GAGTC 1 cut(s) 185
MmeI TCCRAC 2 cut(s) 184, 249
MnlI CCTC 2 cut(s) 97, 151
MroXI GAANNNNTTC 1 cut(s) 168
MslI CAYNNNNRTG 3 cut(s) 36, 39, 42
MspA1I CMGCKG 1 cut(s) 107
MspI CCGG 1 cut(s) 195
MwoI GCNNNNNNNGC 6 cut(s) 10, 13, 16, 19, 116, 152
NlaIII CATG 3 cut(s) 41, 53, 164
NmeAIII GCCGAG 1 cut(s) 122
NmuCI GTSAC 1 cut(s) 112
PceI AGGCCT 1 cut(s) 140
PdmI GAANNNNTTC 1 cut(s) 168
PfeI GAWTC 1 cut(s) 219
PleI GAGTC 1 cut(s) 185
PpsI GAGTC 1 cut(s) 185
PspEI GGTNACC 1 cut(s) 112
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
RseI CAYNNNNRTG 3 cut(s) 36, 39, 42
SchI GAGTC 1 cut(s) 185
SduI GDGCHC 1 cut(s) 272
SetI ASST 3 cut(s) 78, 157, 246
SmiMI CAYNNNNRTG 3 cut(s) 36, 39, 42
SseBI AGGCCT 1 cut(s) 140
SsiI CCGC 4 cut(s) 84, 107, 110, 117
SspMI CTAG 2 cut(s) 237, 245
StuI AGGCCT 1 cut(s) 140
TaqI TCGA 1 cut(s) 213
TatI WGTACW 1 cut(s) 63
TauI GCSGC 2 cut(s) 86, 110
TfiI GAWTC 1 cut(s) 219
TseFI GTSAC 1 cut(s) 112
TseI GCWGC 8 cut(s) 4, 7, 10, 13, 16, 19, 104, 241
Tsp45I GTSAC 1 cut(s) 112
TspDTI ATGAA 1 cut(s) 177
XcmI CCANNNNNNNNNTGG 2 cut(s) 38, 41
XmnI GAANNNNTTC 1 cut(s) 168
XspI CTAG 2 cut(s) 237, 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.