Rmu_sc0038911.1_g000001

Zeta toxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0038911.1
OG0031127
Physical Location & Seq
Reverse (-)
2 .. 509
508 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0038911.1_g000001.1.cds

Sequence Viewer

Length: 278 bp
atgcagcagcagcagcaccaccaccaccaccatgatggtgggcatgagacaatcaagtacatcaagcacctactggccgcctcgtttgttagtggtgcagcggcggtcaccgccccttatcaccagaaaaaggccgccttgacagctccacatgaaatctttccaagtctcaacaggacagactccggccgtgttggaaacatcgagagattctccgactatgttgctaggcagctaggattttcggacgcaaatgagtgccccaagatgtgcaagtt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Zeta_toxin

Protein Analysis

92

Amino Acids

10.27

Weight (kDa)

8.67

Isoelectric Point (pI)

47.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031127)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001380.1_g000001 Rmu_sc0038911.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 78, 101, 104, 111, 135
AcoI YGGCCR 2 cut(s) 75, 187
AfaI GTAC 1 cut(s) 59
AfiI CCNNNNNNNGG 1 cut(s) 130
AluBI AGCT 2 cut(s) 146, 235
AluI AGCT 2 cut(s) 146, 235
Alw26I GTCTC 2 cut(s) 41, 173
AoxI GGCC 3 cut(s) 75, 132, 187
ApeKI GCWGC 6 cut(s) 4, 7, 10, 13, 98, 232
Asp700I GAANNNNTTC 1 cut(s) 159
AsuHPI GGTGA 2 cut(s) 100, 113
BaeGI GKGCMC 1 cut(s) 263
BbvI GCAGC 6 cut(s) 16, 19, 22, 25, 110, 244
BccI CCATC 1 cut(s) 29
BceAI ACGGC 1 cut(s) 174
BcgI CGANNNNNNTGC 2 cut(s) 206, 240
BcoDI GTCTC 2 cut(s) 41, 173
BfaI CTAG 2 cut(s) 228, 236
BisI GCNGC 9 cut(s) 5, 8, 11, 14, 78, 99, 102, 135, 233
BlsI GCNGC 9 cut(s) 6, 9, 12, 15, 79, 100, 103, 136, 234
BplI GAGNNNNNCTC 2 cut(s) 197, 229
Bsc4I CCNNNNNNNGG 1 cut(s) 130
Bse1I ACTGG 1 cut(s) 78
BseLI CCNNNNNNNGG 1 cut(s) 130
BseNI ACTGG 1 cut(s) 78
BseSI GKGCMC 1 cut(s) 263
BseX3I CGGCCG 1 cut(s) 187
BseXI GCAGC 6 cut(s) 16, 19, 22, 25, 110, 244
BsgI GTGCAG 1 cut(s) 117
Bsh1285I CGRYCG 1 cut(s) 190
BshFI GGCC 3 cut(s) 77, 134, 189
BsiEI CGRYCG 1 cut(s) 190
BsiSI CCGG 1 cut(s) 186
BslI CCNNNNNNNGG 1 cut(s) 130
BsmAI GTCTC 2 cut(s) 41, 173
BsnI GGCC 3 cut(s) 77, 134, 189
Bsp1286I GDGCHC 1 cut(s) 263
BspACI CCGC 5 cut(s) 78, 101, 104, 111, 135
BspANI GGCC 3 cut(s) 77, 134, 189
BsrI ACTGG 1 cut(s) 78
BstEII GGTNACC 1 cut(s) 106
BstMAI GTCTC 2 cut(s) 41, 173
BstMCI CGRYCG 1 cut(s) 190
BstMWI GCNNNNNNNGC 4 cut(s) 10, 13, 110, 143
BstPI GGTNACC 1 cut(s) 106
BstSLI GKGCMC 1 cut(s) 263
BstV1I GCAGC 6 cut(s) 16, 19, 22, 25, 110, 244
BstXI CCANNNNNNTGG 2 cut(s) 35, 38
BstZI CGGCCG 1 cut(s) 187
BsuRI GGCC 3 cut(s) 77, 134, 189
CseI GACGC 1 cut(s) 257
Csp6I GTAC 1 cut(s) 58
CviAII CATG 3 cut(s) 32, 44, 152
CviJI RGCY 5 cut(s) 77, 134, 146, 189, 235
CviKI_1 RGCY 5 cut(s) 77, 134, 146, 189, 235
CviQI GTAC 1 cut(s) 58
EaeI YGGCCR 2 cut(s) 75, 187
EagI CGGCCG 1 cut(s) 187
EclXI CGGCCG 1 cut(s) 187
Eco52I CGGCCG 1 cut(s) 187
Eco91I GGTNACC 1 cut(s) 106
EcoO65I GGTNACC 1 cut(s) 106
FaeI CATG 3 cut(s) 35, 47, 155
FaiI YATR 4 cut(s) 33, 45, 153, 222
FalI AAGNNNNNCTT 2 cut(s) 122, 154
FatI CATG 3 cut(s) 31, 43, 151
Fnu4HI GCNGC 9 cut(s) 5, 8, 11, 14, 78, 99, 102, 135, 233
Fsp4HI GCNGC 9 cut(s) 5, 8, 11, 14, 78, 99, 102, 135, 233
FspBI CTAG 2 cut(s) 228, 236
GluI GCNGC 9 cut(s) 5, 8, 11, 14, 78, 99, 102, 135, 233
HaeIII GGCC 3 cut(s) 77, 134, 189
HapII CCGG 1 cut(s) 186
HgaI GACGC 1 cut(s) 257
Hin1II CATG 3 cut(s) 35, 47, 155
HinfI GANTC 2 cut(s) 182, 210
HpaII CCGG 1 cut(s) 186
HphI GGTGA 2 cut(s) 100, 113
Hpy188I TCNGA 2 cut(s) 217, 247
Hpy188III TCNNGA 1 cut(s) 205
HpyCH4V TGCA 3 cut(s) 4, 98, 273
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 13, 110, 143
Hsp92II CATG 3 cut(s) 35, 47, 155
LmnI GCTCC 1 cut(s) 151
LpnPI CCDG 4 cut(s) 59, 137, 160, 199
Lsp1109I GCAGC 6 cut(s) 16, 19, 22, 25, 110, 244
MaeI CTAG 2 cut(s) 228, 236
MaeIII GTNAC 1 cut(s) 106
MhlI GDGCHC 1 cut(s) 263
MlyI GAGTC 1 cut(s) 176
MmeI TCCRAC 2 cut(s) 175, 240
MnlI CCTC 1 cut(s) 91
MroXI GAANNNNTTC 1 cut(s) 159
MslI CAYNNNNRTG 3 cut(s) 30, 33, 36
MspA1I CMGCKG 1 cut(s) 101
MspI CCGG 1 cut(s) 186
MwoI GCNNNNNNNGC 4 cut(s) 10, 13, 110, 143
NlaIII CATG 3 cut(s) 35, 47, 155
NmuCI GTSAC 1 cut(s) 106
PdmI GAANNNNTTC 1 cut(s) 159
PfeI GAWTC 1 cut(s) 210
PkrI GCNGC 9 cut(s) 6, 9, 12, 15, 79, 100, 103, 136, 234
PleI GAGTC 1 cut(s) 176
PpsI GAGTC 1 cut(s) 176
PspEI GGTNACC 1 cut(s) 106
RsaI GTAC 1 cut(s) 59
RsaNI GTAC 1 cut(s) 58
RseI CAYNNNNRTG 3 cut(s) 30, 33, 36
SatI GCNGC 9 cut(s) 5, 8, 11, 14, 78, 99, 102, 135, 233
SchI GAGTC 1 cut(s) 176
SduI GDGCHC 1 cut(s) 263
SetI ASST 3 cut(s) 72, 148, 237
SmiMI CAYNNNNRTG 3 cut(s) 30, 33, 36
SsiI CCGC 5 cut(s) 78, 101, 104, 111, 135
SspMI CTAG 2 cut(s) 228, 236
TaqI TCGA 1 cut(s) 204
TatI WGTACW 1 cut(s) 57
TauI GCSGC 3 cut(s) 80, 104, 137
TfiI GAWTC 1 cut(s) 210
TseFI GTSAC 1 cut(s) 106
TseI GCWGC 6 cut(s) 4, 7, 10, 13, 98, 232
Tsp45I GTSAC 1 cut(s) 106
TspDTI ATGAA 1 cut(s) 168
XcmI CCANNNNNNNNNTGG 2 cut(s) 32, 35
XmnI GAANNNNTTC 1 cut(s) 159
XspI CTAG 2 cut(s) 228, 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.