Rmu_sc0001393.1_g000048

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001393.1
OG0031129
Physical Location & Seq
Forward (+)
205001 .. 206512
1512 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001393.1_g000048.1.cds

Sequence Viewer

Length: 798 bp
atgcgactgaaaagtgacccaaaacttgaacttcacacgttaatttcaaagcggagctccgctctggataggatctctcgactcgaggcgcgacggagcggcgggggttgccggaaggactccaggggtcgggcggagcagtctgcagtcggtggagtcgccggcgacgtcattgcagagctgcccagaaaacctgcagttgcaggtcgggttgctgcccagaacctgcaaccccgacctcctctgacctcgaacactgcccagaacagtccgagatgcctccggcctccctcttgcaagccgcgcgtcgccgtcgccgcttggaatgcctccgctgcgtcgccgtccgcagatgtccgctttggaacgggcctctttgctcaggttccaaggcttaaaactctggaagatgaagctttgacgttgatctgcgcgtttttgaaaccagtggtctatcaggataatagctttgtttttcaagcaggagaaccacttgatcgcattctcttcgttacagaaggcttaatatggacccaccaggtggcgggcactactgatagcagtagcagtagtcaaaatggaaaaggaaaaaccggtttcagttttcttgagaaaggtggtttttacggagacggtcaacttctgagttgggctatagcatcacacaagaatgatctttcctttagcaaccttccgatctcgaaagtgaatgtgaaatgccatgcaaaggtagaaggttttgttcttatggcgaaggacttgaaaactgtagtctcccgctacaaagtgtatccatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

265

Amino Acids

28.59

Weight (kDa)

9.88

Isoelectric Point (pI)

39.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031129)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001393.1_g000048
rosa_rugosa Rorug02G0166200.1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 171
Acc36I ACCTGC 3 cut(s) 194, 202, 234
AccB7I CCANNNNNTGG 1 cut(s) 541
AccBSI CCGCTC 2 cut(s) 62, 99
AccII CGCG 4 cut(s) 91, 304, 306, 434
AclWI GGATC 1 cut(s) 80
AcyI GRCGYC 1 cut(s) 168
AdeI CACNNNGTG 1 cut(s) 541
AfiI CCNNNNNNNGG 4 cut(s) 129, 541, 544, 727
AflIII ACRYGT 1 cut(s) 36
AgeI ACCGGT 1 cut(s) 593
AgsI TTSAA 5 cut(s) 29, 48, 442, 479, 763
AjnI CCWGG 2 cut(s) 122, 537
AluBI AGCT 4 cut(s) 57, 181, 416, 468
AluI AGCT 4 cut(s) 57, 181, 416, 468
Alw21I GWGCWC 1 cut(s) 59
Alw26I GTCTC 2 cut(s) 624, 778
AlwI GGATC 1 cut(s) 80
AlwNI CAGNNNCTG 1 cut(s) 226
Ama87I CYCGRG 1 cut(s) 83
AoxI GGCC 2 cut(s) 284, 370
ApeKI GCWGC 3 cut(s) 181, 215, 335
AsiGI ACCGGT 1 cut(s) 593
AspLEI GCGC 3 cut(s) 91, 306, 434
AspS9I GGNCC 2 cut(s) 370, 531
AvaI CYCGRG 1 cut(s) 83
AvaII GGWCC 1 cut(s) 531
BaeGI GKGCMC 1 cut(s) 551
BanII GRGCYC 1 cut(s) 59
Bbv12I GWGCWC 1 cut(s) 59
BbvI GCAGC 3 cut(s) 168, 202, 322
BceAI ACGGC 2 cut(s) 296, 328
BcgI CGANNNNNNTGC 4 cut(s) 155, 189, 490, 524
BciT130I CCWGG 2 cut(s) 124, 539
BcoDI GTCTC 2 cut(s) 624, 778
BfmI CTRYAG 4 cut(s) 144, 195, 654, 768
BfuAI ACCTGC 3 cut(s) 194, 202, 234
BisI GCNGC 6 cut(s) 100, 182, 216, 302, 318, 336
BlsI GCNGC 6 cut(s) 101, 183, 217, 303, 319, 337
Bme1390I CCNGG 2 cut(s) 124, 539
Bme18I GGWCC 1 cut(s) 531
BmeT110I CYCGRG 1 cut(s) 83
BmgT120I GGNCC 2 cut(s) 370, 531
BmiI GGNNCC 2 cut(s) 387, 533
BmrFI CCNGG 2 cut(s) 124, 539
BmsI GCATC 2 cut(s) 266, 668
BplI GAGNNNNNCTC 2 cut(s) 46, 78
BpmI CTGGAG 1 cut(s) 106
Bpu10I CCTNAGC 1 cut(s) 381
BpuEI CTTGAG 1 cut(s) 629
BsaHI GRCGYC 1 cut(s) 168
BsaJI CCNNGG 2 cut(s) 123, 389
BsaWI WCCGGW 1 cut(s) 593
Bsc4I CCNNNNNNNGG 4 cut(s) 129, 541, 544, 727
Bse118I RCCGGY 2 cut(s) 161, 593
Bse1I ACTGG 1 cut(s) 446
Bse3DI GCAATG 1 cut(s) 171
BseBI CCWGG 2 cut(s) 124, 539
BseDI CCNNGG 2 cut(s) 123, 389
BseLI CCNNNNNNNGG 4 cut(s) 129, 541, 544, 727
BseMI GCAATG 1 cut(s) 171
BseMII CTCAG 2 cut(s) 395, 635
BseNI ACTGG 1 cut(s) 446
BseRI GAGGAG 1 cut(s) 231
BseSI GKGCMC 1 cut(s) 551
BseXI GCAGC 3 cut(s) 168, 202, 322
Bsh1236I CGCG 4 cut(s) 91, 304, 306, 434
BshFI GGCC 2 cut(s) 286, 372
BshTI ACCGGT 1 cut(s) 593
BsiHKAI GWGCWC 1 cut(s) 59
BsiHKCI CYCGRG 1 cut(s) 83
BsiSI CCGG 4 cut(s) 112, 162, 283, 594
BslI CCNNNNNNNGG 4 cut(s) 129, 541, 544, 727
BsmAI GTCTC 2 cut(s) 624, 778
BsmBI CGTCTC 1 cut(s) 624
BsmI GAATGC 2 cut(s) 331, 501
BsnI GGCC 2 cut(s) 286, 372
BsoBI CYCGRG 1 cut(s) 83
Bsp1286I GDGCHC 2 cut(s) 59, 551
Bsp143I GATC 5 cut(s) 72, 426, 496, 673, 696
BspANI GGCC 2 cut(s) 286, 372
BspCNI CTCAG 2 cut(s) 394, 636
BspFNI CGCG 4 cut(s) 91, 304, 306, 434
BspLI GGNNCC 2 cut(s) 387, 533
BspMAI CTGCAG 2 cut(s) 148, 199
BspMI ACCTGC 3 cut(s) 194, 202, 234
BspPI GGATC 1 cut(s) 80
BsrBI CCGCTC 2 cut(s) 62, 99
BsrDI GCAATG 1 cut(s) 171
BsrFI RCCGGY 2 cut(s) 161, 593
BsrI ACTGG 1 cut(s) 446
BssAI RCCGGY 2 cut(s) 161, 593
BssECI CCNNGG 2 cut(s) 123, 389
BssMI GATC 5 cut(s) 72, 426, 496, 673, 696
BssNI GRCGYC 1 cut(s) 168
BssT1I CCWWGG 1 cut(s) 389
Bst2UI CCWGG 2 cut(s) 124, 539
Bst4CI ACNGT 3 cut(s) 269, 635, 769
Bst6I CTCTTC 1 cut(s) 512
BstACI GRCGYC 1 cut(s) 168
BstC8I GCNNGC 3 cut(s) 163, 299, 547
BstDEI CTNAG 2 cut(s) 381, 644
BstFNI CGCG 4 cut(s) 91, 304, 306, 434
BstHHI GCGC 3 cut(s) 91, 306, 434
BstKTI GATC 5 cut(s) 75, 429, 499, 676, 699
BstMAI GTCTC 2 cut(s) 624, 778
BstMBI GATC 5 cut(s) 72, 426, 496, 673, 696
BstMWI GCNNNNNNNGC 5 cut(s) 108, 303, 317, 326, 335
BstNI CCWGG 2 cut(s) 124, 539
BstSCI CCNGG 2 cut(s) 122, 537
BstSFI CTRYAG 4 cut(s) 144, 195, 654, 768
BstSLI GKGCMC 1 cut(s) 551
BstUI CGCG 4 cut(s) 91, 304, 306, 434
BstV1I GCAGC 3 cut(s) 168, 202, 322
BstX2I RGATCY 1 cut(s) 72
BstYI RGATCY 1 cut(s) 72
BsuRI GGCC 2 cut(s) 286, 372
BtsI GCAGTG 1 cut(s) 255
BtsIMutI CAGTG 2 cut(s) 255, 453
BveI ACCTGC 3 cut(s) 194, 202, 234
Cac8I GCNNGC 3 cut(s) 163, 299, 547
CaiI CAGNNNCTG 1 cut(s) 226
CfoI GCGC 3 cut(s) 91, 306, 434
Cfr10I RCCGGY 2 cut(s) 161, 593
Cfr13I GGNCC 2 cut(s) 370, 531
CseI GACGC 2 cut(s) 295, 327
CsiI ACCWGGT 1 cut(s) 537
CspAI ACCGGT 1 cut(s) 593
CviAII CATG 2 cut(s) 722, 795
DdeI CTNAG 2 cut(s) 381, 644
DpnI GATC 5 cut(s) 74, 428, 498, 675, 698
DpnII GATC 5 cut(s) 72, 426, 496, 673, 696
DraIII CACNNNGTG 1 cut(s) 541
Eam1104I CTCTTC 1 cut(s) 512
EarI CTCTTC 1 cut(s) 512
EciI GGCGGA 1 cut(s) 149
Ecl136II GAGCTC 1 cut(s) 57
Eco130I CCWWGG 1 cut(s) 389
Eco24I GRGCYC 1 cut(s) 59
Eco47I GGWCC 1 cut(s) 531
Eco53kI GAGCTC 1 cut(s) 57
Eco88I CYCGRG 1 cut(s) 83
EcoICRI GAGCTC 1 cut(s) 57
EcoRII CCWGG 2 cut(s) 122, 537
EcoT14I CCWWGG 1 cut(s) 389
EcoT38I GRGCYC 1 cut(s) 59
ErhI CCWWGG 1 cut(s) 389
Esp3I CGTCTC 1 cut(s) 624
FaeI CATG 2 cut(s) 725, 798
FaiI YATR 5 cut(s) 529, 656, 723, 749, 796
FatI CATG 2 cut(s) 721, 794
FauI CCCGC 3 cut(s) 95, 538, 785
Fnu4HI GCNGC 6 cut(s) 100, 182, 216, 302, 318, 336
FriOI GRGCYC 1 cut(s) 59
Fsp4HI GCNGC 6 cut(s) 100, 182, 216, 302, 318, 336
GlaI GCGC 3 cut(s) 90, 305, 433
GluI GCNGC 6 cut(s) 100, 182, 216, 302, 318, 336
GsuI CTGGAG 1 cut(s) 106
HaeIII GGCC 2 cut(s) 286, 372
HapII CCGG 4 cut(s) 112, 162, 283, 594
HgaI GACGC 2 cut(s) 295, 327
HhaI GCGC 3 cut(s) 91, 306, 434
Hin1I GRCGYC 1 cut(s) 168
Hin1II CATG 2 cut(s) 725, 798
Hin6I GCGC 3 cut(s) 89, 304, 432
HinP1I GCGC 3 cut(s) 89, 304, 432
HincII GTYRAC 1 cut(s) 638
HindII GTYRAC 1 cut(s) 638
HindIII AAGCTT 1 cut(s) 414
HinfI GANTC 3 cut(s) 81, 119, 156
HpaII CCGG 4 cut(s) 112, 162, 283, 594
Hpy166II GTNNAC 1 cut(s) 638
Hpy188I TCNGA 4 cut(s) 246, 273, 645, 696
Hpy188III TCNNGA 6 cut(s) 65, 78, 404, 458, 608, 700
Hpy8I GTNNAC 1 cut(s) 638
Hpy99I CGWCG 5 cut(s) 96, 170, 311, 317, 343
HpyAV CCTTC 5 cut(s) 109, 512, 701, 728, 748
HpyCH4III ACNGT 3 cut(s) 269, 635, 769
HpyCH4IV ACGT 3 cut(s) 38, 168, 422
HpyCH4V TGCA 7 cut(s) 146, 176, 197, 203, 229, 297, 725
HpyF10VI GCNNNNNNNGC 5 cut(s) 108, 303, 317, 326, 335
HpyF3I CTNAG 2 cut(s) 381, 644
HpySE526I ACGT 3 cut(s) 38, 168, 422
Hsp92I GRCGYC 1 cut(s) 168
Hsp92II CATG 2 cut(s) 725, 798
HspAI GCGC 3 cut(s) 89, 304, 432
KroI GCCGGC 1 cut(s) 161
KroNI GCCGGC 1 cut(s) 163
Kzo9I GATC 5 cut(s) 72, 426, 496, 673, 696
LmnI GCTCC 4 cut(s) 54, 62, 96, 136
Lsp1109I GCAGC 3 cut(s) 168, 202, 322
LweI GCATC 2 cut(s) 266, 668
MabI ACCWGGT 1 cut(s) 537
MaeII ACGT 3 cut(s) 38, 168, 422
MaeIII GTNAC 2 cut(s) 14, 511
MalI GATC 5 cut(s) 74, 428, 498, 675, 698
MbiI CCGCTC 2 cut(s) 62, 99
MboI GATC 5 cut(s) 72, 426, 496, 673, 696
MboII GAAGA 2 cut(s) 419, 499
MflI RGATCY 1 cut(s) 72
MhlI GDGCHC 2 cut(s) 59, 551
MluCI AATT 1 cut(s) 42
MlyI GAGTC 3 cut(s) 75, 113, 165
MnlI CCTC 9 cut(s) 79, 249, 252, 259, 290, 297, 301, 340, 383
MreI CGCCGGCG 1 cut(s) 161
MroNI GCCGGC 1 cut(s) 161
MseI TTAA 3 cut(s) 41, 396, 524
MslI CAYNNNNRTG 1 cut(s) 669
MspA1I CMGCKG 1 cut(s) 335
MspI CCGG 4 cut(s) 112, 162, 283, 594
MspR9I CCNGG 2 cut(s) 124, 539
Mva1269I GAATGC 2 cut(s) 331, 501
MvaI CCWGG 2 cut(s) 124, 539
MvnI CGCG 4 cut(s) 91, 304, 306, 434
MwoI GCNNNNNNNGC 5 cut(s) 108, 303, 317, 326, 335
NaeI GCCGGC 1 cut(s) 163
NdeII GATC 5 cut(s) 72, 426, 496, 673, 696
NgoMIV GCCGGC 1 cut(s) 161
NlaIII CATG 2 cut(s) 725, 798
NlaIV GGNNCC 2 cut(s) 387, 533
NmuCI GTSAC 1 cut(s) 14
PaeR7I CTCGAG 1 cut(s) 83
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PctI GAATGC 2 cut(s) 331, 501
PdiI GCCGGC 1 cut(s) 163
PflMI CCANNNNNTGG 1 cut(s) 541
PinAI ACCGGT 1 cut(s) 593
PkrI GCNGC 6 cut(s) 101, 183, 217, 303, 319, 337
PleI GAGTC 3 cut(s) 75, 113, 164
PpsI GAGTC 3 cut(s) 75, 113, 164
Psp124BI GAGCTC 1 cut(s) 59
Psp6I CCWGG 2 cut(s) 122, 537
PspGI CCWGG 2 cut(s) 122, 537
PspN4I GGNNCC 2 cut(s) 387, 533
PspPI GGNCC 2 cut(s) 370, 531
PspXI VCTCGAGB 1 cut(s) 83
PstI CTGCAG 2 cut(s) 148, 199
PstNI CAGNNNCTG 1 cut(s) 226
PsuI RGATCY 1 cut(s) 72
RseI CAYNNNNRTG 1 cut(s) 669
SacI GAGCTC 1 cut(s) 59
SaqAI TTAA 3 cut(s) 41, 396, 524
SatI GCNGC 6 cut(s) 100, 182, 216, 302, 318, 336
Sau3AI GATC 5 cut(s) 72, 426, 496, 673, 696
Sau96I GGNCC 2 cut(s) 370, 531
SchI GAGTC 3 cut(s) 75, 113, 165
ScrFI CCNGG 2 cut(s) 124, 539
SduI GDGCHC 2 cut(s) 59, 551
SexAI ACCWGGT 1 cut(s) 537
SfaNI GCATC 2 cut(s) 266, 668
SfcI CTRYAG 4 cut(s) 144, 195, 654, 768
Sfr274I CTCGAG 1 cut(s) 83
SgrAI CRCCGGYG 1 cut(s) 161
SinI GGWCC 1 cut(s) 531
SlaI CTCGAG 1 cut(s) 83
SmiMI CAYNNNNRTG 1 cut(s) 669
SmlI CTYRAG 2 cut(s) 83, 608
SmoI CTYRAG 2 cut(s) 83, 608
Sse9I AATT 1 cut(s) 42
SstI GAGCTC 1 cut(s) 59
StyD4I CCNGG 2 cut(s) 122, 537
StyI CCWWGG 1 cut(s) 389
TaaI ACNGT 3 cut(s) 269, 635, 769
TaiI ACGT 3 cut(s) 41, 171, 425
TaqI TCGA 4 cut(s) 79, 84, 251, 701
TasI AATT 1 cut(s) 42
TauI GCSGC 3 cut(s) 102, 304, 320
Tru1I TTAA 3 cut(s) 41, 396, 524
Tru9I TTAA 3 cut(s) 41, 396, 524
TscAI CASTG 2 cut(s) 262, 453
TseFI GTSAC 1 cut(s) 14
TseI GCWGC 3 cut(s) 181, 215, 335
Tsp45I GTSAC 1 cut(s) 14
TspDTI ATGAA 1 cut(s) 426
TspGWI ACGGA 2 cut(s) 109, 642
TspRI CASTG 2 cut(s) 262, 453
Van91I CCANNNNNTGG 1 cut(s) 541
VpaK11BI GGWCC 1 cut(s) 531
XhoI CTCGAG 1 cut(s) 83
ZraI GACGTC 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.