Rmu_sc0001432.1_g000008

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001432.1
OG0030728
Physical Location & Seq
Forward (+)
26474 .. 27952
1479 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 747 bp
atgtggatcccaacaatccagctatggactcttgcggcggccctcgcaagccggactatcattgaagttcttagaagggtacctcgccgtcaccatcccaacctcaaacaccaaattcttcccgctggacctgattccggtgatcgaccacgacaggcagaaggcctagacgttaatgccgatgatttcagcgatccggcctcggttgattttactggtgactttcttggaatacgtggccaagtagttgtccggcgggagcgtgatcttgcacgtgtcgccaaggtcgatgacgaagtcggcgataagggggttgacggtgtagtttttgaccggagaaggaaggagcccgattgggaagctgtagcgggtcagctcggtgtgggccggcgatggggttcggaaaccggcctggcaggattgggcggaatttttcgggatcatgaaggtttggcgcttactcctttggtggtagagactgactgcatggatttggtgcaagctgtggctgggtcttctctggatcactcggacctgggatttttgttaagggacttgacagtgttactgcaagctgcgttaggtgcaagagtgaattatagtaatcgtaatgcaaatctggtggcgcatactctagcacaagaggccaaggttggtcagttttgggtgaatttttttaccaatattcctccaagtgtggaggctattgtaacctcttattgtaatgattccccatcaatgaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

248

Amino Acids

27.1

Weight (kDa)

5.37

Isoelectric Point (pI)

37.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 153 - 216 3.7e-07 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030728)

Species Orthologous Gene IDs
rosa_laevigata RLG00000013050
rosa_multiflora Rmu_sc0001432.1_g000008

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 79
AccB1I GGYRCC 1 cut(s) 79
AciI CCGC 6 cut(s) 35, 38, 123, 256, 368, 426
AclWI GGATC 4 cut(s) 14, 188, 447, 531
AcoI YGGCCR 1 cut(s) 238
AcsI RAATTY 3 cut(s) 114, 429, 670
AcvI CACGTG 1 cut(s) 275
AfaI GTAC 1 cut(s) 81
AfiI CCNNNNNNNGG 2 cut(s) 137, 394
AflIII ACRYGT 1 cut(s) 274
AgsI TTSAA 1 cut(s) 65
AjnI CCWGG 2 cut(s) 411, 534
AluBI AGCT 5 cut(s) 22, 362, 376, 503, 575
AluI AGCT 5 cut(s) 22, 362, 376, 503, 575
Alw26I GTCTC 1 cut(s) 470
AlwI GGATC 4 cut(s) 14, 188, 447, 531
AoxI GGCC 7 cut(s) 39, 163, 198, 238, 385, 409, 645
ApeKI GCWGC 1 cut(s) 575
ApoI RAATTY 3 cut(s) 114, 429, 670
Asp718I GGTACC 1 cut(s) 79
AspLEI GCGC 2 cut(s) 457, 628
AspS9I GGNCC 4 cut(s) 40, 128, 385, 532
AsuHPI GGTGA 4 cut(s) 83, 152, 230, 679
AvaII GGWCC 2 cut(s) 128, 532
BalI TGGCCA 1 cut(s) 240
BamHI GGATCC 1 cut(s) 6
BanI GGYRCC 1 cut(s) 79
BanII GRGCYC 1 cut(s) 351
BbrPI CACGTG 1 cut(s) 275
BbsI GAAGAC 1 cut(s) 507
BbvI GCAGC 1 cut(s) 562
BccI CCATC 3 cut(s) 102, 387, 742
BceAI ACGGC 1 cut(s) 72
BciT130I CCWGG 2 cut(s) 413, 536
BcoDI GTCTC 1 cut(s) 470
BfaI CTAG 2 cut(s) 167, 635
BfmI CTRYAG 1 cut(s) 363
BfoI RGCGCY 1 cut(s) 458
BisI GCNGC 3 cut(s) 36, 39, 576
BlsI GCNGC 3 cut(s) 37, 40, 577
Bme1390I CCNGG 2 cut(s) 413, 536
Bme18I GGWCC 2 cut(s) 128, 532
BmgT120I GGNCC 4 cut(s) 40, 128, 385, 532
BmiI GGNNCC 3 cut(s) 8, 81, 348
BmrFI CCNGG 2 cut(s) 413, 536
BpiI GAAGAC 1 cut(s) 507
BsaAI YACGTR 2 cut(s) 236, 275
BsaJI CCNNGG 4 cut(s) 201, 282, 535, 648
BsaWI WCCGGW 2 cut(s) 137, 333
Bsc4I CCNNNNNNNGG 2 cut(s) 137, 394
Bse118I RCCGGY 2 cut(s) 387, 407
Bse1I ACTGG 1 cut(s) 220
BseBI CCWGG 2 cut(s) 413, 536
BseDI CCNNGG 4 cut(s) 201, 282, 535, 648
BseGI GGATG 1 cut(s) 94
BseLI CCNNNNNNNGG 2 cut(s) 137, 394
BseNI ACTGG 1 cut(s) 220
BseXI GCAGC 1 cut(s) 562
BseYI CCCAGC 1 cut(s) 509
BshFI GGCC 7 cut(s) 41, 165, 200, 240, 387, 411, 647
BshNI GGYRCC 1 cut(s) 79
BsiSI CCGG 7 cut(s) 52, 138, 197, 253, 334, 388, 408
BslFI GGGAC 1 cut(s) 566
BslI CCNNNNNNNGG 2 cut(s) 137, 394
BsmAI GTCTC 1 cut(s) 470
BsmFI GGGAC 1 cut(s) 566
BsnI GGCC 7 cut(s) 41, 165, 200, 240, 387, 411, 647
Bsp1286I GDGCHC 1 cut(s) 351
Bsp143I GATC 6 cut(s) 6, 142, 193, 265, 439, 523
BspACI CCGC 6 cut(s) 35, 38, 123, 256, 368, 426
BspANI GGCC 7 cut(s) 41, 165, 200, 240, 387, 411, 647
BspHI TCATGA 1 cut(s) 442
BspLI GGNNCC 3 cut(s) 8, 81, 348
BspPI GGATC 4 cut(s) 14, 188, 447, 531
BspT107I GGYRCC 1 cut(s) 79
BsrFI RCCGGY 2 cut(s) 387, 407
BsrI ACTGG 1 cut(s) 220
BssAI RCCGGY 2 cut(s) 387, 407
BssECI CCNNGG 4 cut(s) 201, 282, 535, 648
BssMI GATC 6 cut(s) 6, 142, 193, 265, 439, 523
BssT1I CCWWGG 2 cut(s) 282, 648
Bst2UI CCWGG 2 cut(s) 413, 536
Bst4CI ACNGT 2 cut(s) 320, 562
BstBAI YACGTR 2 cut(s) 236, 275
BstC8I GCNNGC 4 cut(s) 49, 389, 501, 573
BstDEI CTNAG 1 cut(s) 71
BstF5I GGATG 1 cut(s) 94
BstH2I RGCGCY 1 cut(s) 458
BstHHI GCGC 2 cut(s) 457, 628
BstKTI GATC 6 cut(s) 9, 145, 196, 268, 442, 526
BstMAI GTCTC 1 cut(s) 470
BstMBI GATC 6 cut(s) 6, 142, 193, 265, 439, 523
BstMWI GCNNNNNNNGC 4 cut(s) 44, 278, 584, 644
BstNI CCWGG 2 cut(s) 413, 536
BstSCI CCNGG 2 cut(s) 411, 534
BstSFI CTRYAG 1 cut(s) 363
BstV1I GCAGC 1 cut(s) 562
BstV2I GAAGAC 1 cut(s) 507
BstX2I RGATCY 1 cut(s) 6
BstYI RGATCY 1 cut(s) 6
BsuRI GGCC 7 cut(s) 41, 165, 200, 240, 387, 411, 647
BtgZI GCGATG 1 cut(s) 406
BtsCI GGATG 1 cut(s) 94
BtsIMutI CAGTG 1 cut(s) 567
Cac8I GCNNGC 4 cut(s) 49, 389, 501, 573
CciI TCATGA 1 cut(s) 442
CfoI GCGC 2 cut(s) 457, 628
Cfr10I RCCGGY 2 cut(s) 387, 407
Cfr13I GGNCC 4 cut(s) 40, 128, 385, 532
Csp6I GTAC 1 cut(s) 80
CspCI CAANNNNNGTGG 2 cut(s) 603, 638
CviAII CATG 2 cut(s) 443, 487
CviQI GTAC 1 cut(s) 80
DdeI CTNAG 1 cut(s) 71
DpnI GATC 6 cut(s) 8, 144, 195, 267, 441, 525
DpnII GATC 6 cut(s) 6, 142, 193, 265, 439, 523
EaeI YGGCCR 1 cut(s) 238
EciI GGCGGA 1 cut(s) 441
Eco130I CCWWGG 2 cut(s) 282, 648
Eco147I AGGCCT 1 cut(s) 165
Eco24I GRGCYC 1 cut(s) 351
Eco47I GGWCC 2 cut(s) 128, 532
Eco72I CACGTG 1 cut(s) 275
EcoRII CCWGG 2 cut(s) 411, 534
EcoT14I CCWWGG 2 cut(s) 282, 648
EcoT38I GRGCYC 1 cut(s) 351
ErhI CCWWGG 2 cut(s) 282, 648
FaeI CATG 2 cut(s) 446, 490
FaiI YATR 5 cut(s) 25, 444, 488, 600, 630
FaqI GGGAC 1 cut(s) 566
FatI CATG 2 cut(s) 442, 486
FauI CCCGC 3 cut(s) 130, 249, 361
Fnu4HI GCNGC 3 cut(s) 36, 39, 576
FokI GGATG 1 cut(s) 81
FriOI GRGCYC 1 cut(s) 351
Fsp4HI GCNGC 3 cut(s) 36, 39, 576
FspBI CTAG 2 cut(s) 167, 635
GlaI GCGC 2 cut(s) 456, 627
GluI GCNGC 3 cut(s) 36, 39, 576
GsaI CCCAGC 1 cut(s) 513
HaeII RGCGCY 1 cut(s) 458
HaeIII GGCC 7 cut(s) 41, 165, 200, 240, 387, 411, 647
HapII CCGG 7 cut(s) 52, 138, 197, 253, 334, 388, 408
HhaI GCGC 2 cut(s) 457, 628
Hin1II CATG 2 cut(s) 446, 490
Hin6I GCGC 2 cut(s) 455, 626
HinP1I GCGC 2 cut(s) 455, 626
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HinfI GANTC 3 cut(s) 28, 134, 728
HpaII CCGG 7 cut(s) 52, 138, 197, 253, 334, 388, 408
HphI GGTGA 4 cut(s) 83, 152, 230, 679
Hpy166II GTNNAC 1 cut(s) 316
Hpy188I TCNGA 2 cut(s) 403, 532
Hpy188III TCNNGA 3 cut(s) 437, 443, 521
Hpy8I GTNNAC 1 cut(s) 316
HpyAV CCTTC 5 cut(s) 69, 155, 333, 337, 440
HpyCH4III ACNGT 2 cut(s) 320, 562
HpyCH4IV ACGT 3 cut(s) 171, 235, 274
HpyCH4V TGCA 6 cut(s) 272, 486, 499, 571, 587, 614
HpyF10VI GCNNNNNNNGC 4 cut(s) 44, 278, 584, 644
HpyF3I CTNAG 1 cut(s) 71
HpySE526I ACGT 3 cut(s) 171, 235, 274
Hsp92II CATG 2 cut(s) 446, 490
HspAI GCGC 2 cut(s) 455, 626
KpnI GGTACC 1 cut(s) 83
KroI GCCGGC 1 cut(s) 387
KroNI GCCGGC 1 cut(s) 389
Kzo9I GATC 6 cut(s) 6, 142, 193, 265, 439, 523
LmnI GCTCC 2 cut(s) 259, 346
Lsp1109I GCAGC 1 cut(s) 562
MaeI CTAG 2 cut(s) 167, 635
MaeII ACGT 3 cut(s) 171, 235, 274
MaeIII GTNAC 4 cut(s) 89, 218, 564, 709
MalI GATC 6 cut(s) 8, 144, 195, 267, 441, 525
MboI GATC 6 cut(s) 6, 142, 193, 265, 439, 523
MboII GAAGA 2 cut(s) 110, 507
MflI RGATCY 1 cut(s) 6
MhlI GDGCHC 1 cut(s) 351
MlsI TGGCCA 1 cut(s) 240
MluCI AATT 5 cut(s) 114, 429, 595, 670, 742
MluNI TGGCCA 1 cut(s) 240
MlyI GAGTC 1 cut(s) 22
MnlI CCTC 8 cut(s) 53, 93, 113, 211, 637, 694, 699, 724
Mox20I TGGCCA 1 cut(s) 240
MroNI GCCGGC 1 cut(s) 387
MscI TGGCCA 1 cut(s) 240
MseI TTAA 2 cut(s) 174, 548
Msp20I TGGCCA 1 cut(s) 240
MspA1I CMGCKG 1 cut(s) 125
MspI CCGG 7 cut(s) 52, 138, 197, 253, 334, 388, 408
MspR9I CCNGG 2 cut(s) 413, 536
MvaI CCWGG 2 cut(s) 413, 536
MwoI GCNNNNNNNGC 4 cut(s) 44, 278, 584, 644
NaeI GCCGGC 1 cut(s) 389
NdeII GATC 6 cut(s) 6, 142, 193, 265, 439, 523
NgoMIV GCCGGC 1 cut(s) 387
NlaIII CATG 2 cut(s) 446, 490
NlaIV GGNNCC 3 cut(s) 8, 81, 348
NmuCI GTSAC 2 cut(s) 89, 218
PagI TCATGA 1 cut(s) 442
PceI AGGCCT 1 cut(s) 165
PcsI WCGNNNNNNNCGW 3 cut(s) 177, 285, 300
PdiI GCCGGC 1 cut(s) 389
PfeI GAWTC 2 cut(s) 134, 728
PflFI GACNNNGTC 1 cut(s) 296
PkrI GCNGC 3 cut(s) 37, 40, 577
PleI GAGTC 1 cut(s) 22
PmaCI CACGTG 1 cut(s) 275
PmlI CACGTG 1 cut(s) 275
PpsI GAGTC 1 cut(s) 22
Ppu21I YACGTR 2 cut(s) 236, 275
Psp6I CCWGG 2 cut(s) 411, 534
PspCI CACGTG 1 cut(s) 275
PspFI CCCAGC 1 cut(s) 509
PspGI CCWGG 2 cut(s) 411, 534
PspN4I GGNNCC 3 cut(s) 8, 81, 348
PspPI GGNCC 4 cut(s) 40, 128, 385, 532
PsuI RGATCY 1 cut(s) 6
PsyI GACNNNGTC 1 cut(s) 296
RsaI GTAC 1 cut(s) 81
RsaNI GTAC 1 cut(s) 80
SaqAI TTAA 2 cut(s) 174, 548
SatI GCNGC 3 cut(s) 36, 39, 576
Sau3AI GATC 6 cut(s) 6, 142, 193, 265, 439, 523
Sau96I GGNCC 4 cut(s) 40, 128, 385, 532
SchI GAGTC 1 cut(s) 22
ScrFI CCNGG 2 cut(s) 413, 536
SduI GDGCHC 1 cut(s) 351
SfcI CTRYAG 1 cut(s) 363
SinI GGWCC 2 cut(s) 128, 532
Sse9I AATT 5 cut(s) 114, 429, 595, 670, 742
SseBI AGGCCT 1 cut(s) 165
SsiI CCGC 6 cut(s) 35, 38, 123, 256, 368, 426
SspI AATATT 1 cut(s) 685
SspMI CTAG 2 cut(s) 167, 635
StuI AGGCCT 1 cut(s) 165
StyD4I CCNGG 2 cut(s) 411, 534
StyI CCWWGG 2 cut(s) 282, 648
TaaI ACNGT 2 cut(s) 320, 562
TaiI ACGT 3 cut(s) 174, 238, 277
TaqI TCGA 2 cut(s) 145, 288
TasI AATT 5 cut(s) 114, 429, 595, 670, 742
TauI GCSGC 2 cut(s) 38, 41
TfiI GAWTC 2 cut(s) 134, 728
Tru1I TTAA 2 cut(s) 174, 548
Tru9I TTAA 2 cut(s) 174, 548
TscAI CASTG 1 cut(s) 567
TseFI GTSAC 2 cut(s) 89, 218
TseI GCWGC 1 cut(s) 575
Tsp45I GTSAC 2 cut(s) 89, 218
TspDTI ATGAA 1 cut(s) 459
TspRI CASTG 1 cut(s) 567
Tth111I GACNNNGTC 1 cut(s) 296
VpaK11BI GGWCC 2 cut(s) 128, 532
XapI RAATTY 3 cut(s) 114, 429, 670
XspI CTAG 2 cut(s) 167, 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.