Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001474.1

Orthogroup ID

OG0023068

Physical Location & Seq

Genomic Coordinates Reverse (-)

65384 .. 66257

Gene Structure 874 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001474.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

atgatgttgtccaagctttgctcgctaagcgattgggcaagaaacgcaatattgctgaaattagagcaggtcaacttggagtttcctctgcaactactcagtttgggttgtaatgcatcatttacatgggtgtccaagatatggaaaggcaagaccccaacattttcagaatgtgacttctttgcgctgaagttaaggctgttcattctggaaccacaacacattaaaggatgctacttcagaagctataagggactgggagtagaagatgcatggtttggattggataatggcaagcatgctgcaactttgacaaaaggtgatgttggggttctggacggatctatgagctatttgttacaggatgaagatggtcaaattattgagcctcgtacaggcttagattatcctggggttggaccggagcacagttttctgaaagacttggggcgtgctgagtactacagcgttactgatgatgaagcattggaagattttaaaaaattgtcacaacttgagggaataattccagctttggagacctctcatgcactagcctacttagaaaagttaatgctgttcattctggaaccgcaacacactaaaggatgctacttcataagctataagagactagatgactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004834 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009683 GO:0009684 GO:0009850 GO:0009851 GO:0009941 GO:0009987 GO:0010817 GO:0016020 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0019904 GO:0031967 GO:0031975 GO:0032787 GO:0034641 GO:0034754 GO:0042401 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00400 ko01100 ko01110 ko01130 ko01230 map00260 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

214

Amino Acids

24.22

Weight (kDa)

5.17

Isoelectric Point (pI)

30.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023068)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001474.1_g000015
rosa_rugosa	Rorug06G0113200
rosa_samantha	Rh6AG223300 Rh6BG227500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	58
AccB7I	CCANNNNNTGG	1 cut(s)	141
AciI	CCGC	1 cut(s)	593
AclWI	GGATC	1 cut(s)	349
AcuI	CTGAAG	2 cut(s)	209, 223
AfaI	GTAC	2 cut(s)	394, 461
AfiI	CCNNNNNNNGG	3 cut(s)	141, 395, 416
AjnI	CCWGG	1 cut(s)	409
AluBI	AGCT	5 cut(s)	16, 246, 351, 533, 624
AluI	AGCT	5 cut(s)	16, 246, 351, 533, 624
Alw21I	GWGCWC	1 cut(s)	429
Alw26I	GTCTC	2 cut(s)	533, 625
AlwI	GGATC	1 cut(s)	349
ApeKI	GCWGC	1 cut(s)	302
AspLEI	GCGC	1 cut(s)	187
AspS9I	GGNCC	1 cut(s)	419
AsuHPI	GGTGA	1 cut(s)	332
AvaII	GGWCC	1 cut(s)	419
Bbv12I	GWGCWC	1 cut(s)	429
BbvI	GCAGC	1 cut(s)	289
BccI	CCATC	1 cut(s)	365
BciT130I	CCWGG	1 cut(s)	411
BcoDI	GTCTC	2 cut(s)	533, 625
BfaI	CTAG	2 cut(s)	554, 635
BfmI	CTRYAG	1 cut(s)	463
BfuAI	ACCTGC	1 cut(s)	58
BisI	GCNGC	1 cut(s)	303
BlpI	GCTNAGC	1 cut(s)	26
BlsI	GCNGC	1 cut(s)	304
BmcAI	AGTACT	1 cut(s)	461
Bme1390I	CCNGG	1 cut(s)	411
Bme18I	GGWCC	1 cut(s)	419
BmgT120I	GGNCC	1 cut(s)	419
BmiI	GGNNCC	2 cut(s)	213, 591
BmrFI	CCNGG	1 cut(s)	411
BmrI	ACTGGG	1 cut(s)	266
BmsI	GCATC	4 cut(s)	125, 221, 259, 599
BmuI	ACTGGG	1 cut(s)	266
Bpu1102I	GCTNAGC	1 cut(s)	26
BpuEI	CTTGAG	1 cut(s)	536
BsaI	GGTCTC	1 cut(s)	533
BsaJI	CCNNGG	1 cut(s)	410
BsaWI	WCCGGW	1 cut(s)	421
Bsc4I	CCNNNNNNNGG	3 cut(s)	141, 395, 416
Bse1I	ACTGG	1 cut(s)	261
BseBI	CCWGG	1 cut(s)	411
BseDI	CCNNGG	1 cut(s)	410
BseGI	GGATG	3 cut(s)	236, 370, 614
BseLI	CCNNNNNNNGG	3 cut(s)	141, 395, 416
BseMII	CTCAG	2 cut(s)	112, 447
BseNI	ACTGG	1 cut(s)	261
BseXI	GCAGC	1 cut(s)	289
BsiHKAI	GWGCWC	1 cut(s)	429
BsiSI	CCGG	1 cut(s)	422
BslFI	GGGAC	1 cut(s)	267
BslI	CCNNNNNNNGG	3 cut(s)	141, 395, 416
BsmAI	GTCTC	2 cut(s)	533, 625
BsmFI	GGGAC	1 cut(s)	267
Bso31I	GGTCTC	1 cut(s)	533
Bsp1286I	GDGCHC	1 cut(s)	429
Bsp143I	GATC	1 cut(s)	341
Bsp1720I	GCTNAGC	1 cut(s)	26
BspACI	CCGC	1 cut(s)	593
BspCNI	CTCAG	2 cut(s)	111, 448
BspLI	GGNNCC	2 cut(s)	213, 591
BspMI	ACCTGC	1 cut(s)	58
BspPI	GGATC	1 cut(s)	349
BspTNI	GGTCTC	1 cut(s)	533
BsrI	ACTGG	1 cut(s)	261
BssECI	CCNNGG	1 cut(s)	410
BssMI	GATC	1 cut(s)	341
Bst2UI	CCWGG	1 cut(s)	411
Bst4CI	ACNGT	1 cut(s)	431
BstC8I	GCNNGC	4 cut(s)	23, 296, 300, 453
BstDEI	CTNAG	5 cut(s)	26, 98, 400, 456, 562
BstENI	CCTNNNNNAGG	1 cut(s)	393
BstF5I	GGATG	3 cut(s)	236, 370, 614
BstHHI	GCGC	1 cut(s)	187
BstKTI	GATC	1 cut(s)	344
BstMAI	GTCTC	2 cut(s)	533, 625
BstMBI	GATC	1 cut(s)	341
BstMWI	GCNNNNNNNGC	3 cut(s)	22, 27, 44
BstNI	CCWGG	1 cut(s)	411
BstNSI	RCATGY	1 cut(s)	302
BstSCI	CCNGG	1 cut(s)	409
BstSFI	CTRYAG	1 cut(s)	463
BstV1I	GCAGC	1 cut(s)	289
BstX2I	RGATCY	1 cut(s)	341
BstYI	RGATCY	1 cut(s)	341
BtsCI	GGATG	3 cut(s)	236, 370, 614
BveI	ACCTGC	1 cut(s)	58
Cac8I	GCNNGC	4 cut(s)	23, 296, 300, 453
CfoI	GCGC	1 cut(s)	187
Cfr13I	GGNCC	1 cut(s)	419
Csp6I	GTAC	2 cut(s)	393, 460
CviAII	CATG	4 cut(s)	126, 273, 299, 548
CviJI	RGCY	9 cut(s)	16, 199, 246, 351, 388, 399, 533, 557, 624
CviKI_1	RGCY	9 cut(s)	16, 199, 246, 351, 388, 399, 533, 557, 624
CviQI	GTAC	2 cut(s)	393, 460
DdeI	CTNAG	5 cut(s)	26, 98, 400, 456, 562
DpnI	GATC	1 cut(s)	343
DpnII	GATC	1 cut(s)	341
DraI	TTTAAA	1 cut(s)	499
Eco31I	GGTCTC	1 cut(s)	533
Eco47I	GGWCC	1 cut(s)	419
Eco57I	CTGAAG	2 cut(s)	209, 223
EcoNI	CCTNNNNNAGG	1 cut(s)	393
EcoRII	CCWGG	1 cut(s)	409
EcoT22I	ATGCAT	2 cut(s)	118, 274
FaeI	CATG	4 cut(s)	129, 276, 302, 551
FaiI	YATR	9 cut(s)	127, 142, 249, 274, 300, 347, 549, 620, 627
FaqI	GGGAC	1 cut(s)	267
FatI	CATG	4 cut(s)	125, 272, 298, 547
Fnu4HI	GCNGC	1 cut(s)	303
FokI	GGATG	3 cut(s)	243, 377, 621
Fsp4HI	GCNGC	1 cut(s)	303
FspBI	CTAG	2 cut(s)	554, 635
GlaI	GCGC	1 cut(s)	186
GluI	GCNGC	1 cut(s)	303
HapII	CCGG	1 cut(s)	422
HhaI	GCGC	1 cut(s)	187
Hin1II	CATG	4 cut(s)	129, 276, 302, 551
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HindIII	AAGCTT	1 cut(s)	14
HpaII	CCGG	1 cut(s)	422
HphI	GGTGA	1 cut(s)	332
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	3 cut(s)	169, 242, 438
Hpy188III	TCNNGA	3 cut(s)	209, 335, 587
Hpy8I	GTNNAC	1 cut(s)	73
HpyCH4III	ACNGT	1 cut(s)	431
HpyCH4V	TGCA	5 cut(s)	91, 116, 272, 305, 551
HpyF10VI	GCNNNNNNNGC	3 cut(s)	22, 27, 44
HpyF3I	CTNAG	5 cut(s)	26, 98, 400, 456, 562
Hsp92II	CATG	4 cut(s)	129, 276, 302, 551
HspAI	GCGC	1 cut(s)	185
Kzo9I	GATC	1 cut(s)	341
LmnI	GCTCC	1 cut(s)	424
Lsp1109I	GCAGC	1 cut(s)	289
LweI	GCATC	4 cut(s)	125, 221, 259, 599
MaeI	CTAG	2 cut(s)	554, 635
MaeIII	GTNAC	4 cut(s)	173, 357, 469, 507
MalI	GATC	1 cut(s)	343
MboI	GATC	1 cut(s)	341
MboII	GAAGA	3 cut(s)	278, 380, 503
MflI	RGATCY	1 cut(s)	341
MhlI	GDGCHC	1 cut(s)	429
MluCI	AATT	4 cut(s)	59, 378, 503, 525
MmeI	TCCRAC	1 cut(s)	397
MnlI	CCTC	4 cut(s)	96, 399, 511, 553
Mph1103I	ATGCAT	2 cut(s)	118, 274
MseI	TTAA	4 cut(s)	194, 225, 498, 572
MslI	CAYNNNNRTG	1 cut(s)	124
MspI	CCGG	1 cut(s)	422
MspR9I	CCNGG	1 cut(s)	411
MvaI	CCWGG	1 cut(s)	411
MwoI	GCNNNNNNNGC	3 cut(s)	22, 27, 44
NdeII	GATC	1 cut(s)	341
NlaIII	CATG	4 cut(s)	129, 276, 302, 551
NlaIV	GGNNCC	2 cut(s)	213, 591
NmuCI	GTSAC	2 cut(s)	173, 507
NsiI	ATGCAT	2 cut(s)	118, 274
NspI	RCATGY	1 cut(s)	302
PaeI	GCATGC	1 cut(s)	302
PflMI	CCANNNNNTGG	1 cut(s)	141
PkrI	GCNGC	1 cut(s)	304
Psp6I	CCWGG	1 cut(s)	409
PspGI	CCWGG	1 cut(s)	409
PspN4I	GGNNCC	2 cut(s)	213, 591
PspPI	GGNCC	1 cut(s)	419
PsuI	RGATCY	1 cut(s)	341
RsaI	GTAC	2 cut(s)	394, 461
RsaNI	GTAC	2 cut(s)	393, 460
RseI	CAYNNNNRTG	1 cut(s)	124
SaqAI	TTAA	4 cut(s)	194, 225, 498, 572
SatI	GCNGC	1 cut(s)	303
Sau3AI	GATC	1 cut(s)	341
Sau96I	GGNCC	1 cut(s)	419
ScaI	AGTACT	1 cut(s)	461
ScrFI	CCNGG	1 cut(s)	411
SduI	GDGCHC	1 cut(s)	429
SetI	ASST	8 cut(s)	18, 72, 248, 322, 353, 535, 545, 626
SfaNI	GCATC	4 cut(s)	125, 221, 259, 599
SfcI	CTRYAG	1 cut(s)	463
SinI	GGWCC	1 cut(s)	419
SmiMI	CAYNNNNRTG	1 cut(s)	124
SmlI	CTYRAG	1 cut(s)	515
SmoI	CTYRAG	1 cut(s)	515
SphI	GCATGC	1 cut(s)	302
Sse9I	AATT	4 cut(s)	59, 378, 503, 525
SsiI	CCGC	1 cut(s)	593
SspI	AATATT	1 cut(s)	51
SspMI	CTAG	2 cut(s)	554, 635
StyD4I	CCNGG	1 cut(s)	409
TaaI	ACNGT	1 cut(s)	431
TasI	AATT	4 cut(s)	59, 378, 503, 525
TatI	WGTACW	1 cut(s)	459
Tru1I	TTAA	4 cut(s)	194, 225, 498, 572
Tru9I	TTAA	4 cut(s)	194, 225, 498, 572
TseFI	GTSAC	2 cut(s)	173, 507
TseI	GCWGC	1 cut(s)	302
Tsp45I	GTSAC	2 cut(s)	173, 507
TspDTI	ATGAA	5 cut(s)	193, 381, 495, 571, 607
TspGWI	ACGGA	1 cut(s)	354
Van91I	CCANNNNNTGG	1 cut(s)	141
VpaK11BI	GGWCC	1 cut(s)	419
XagI	CCTNNNNNAGG	1 cut(s)	393
XceI	RCATGY	1 cut(s)	302
XspI	CTAG	2 cut(s)	554, 635
ZrmI	AGTACT	1 cut(s)	461
Zsp2I	ATGCAT	2 cut(s)	118, 274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.