Rmu_sc0001482.1_g000007

Coronatine-insensitive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001482.1
OG0028850
Physical Location & Seq
Forward (+)
22946 .. 24349
1404 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1023 bp
atgaatactggaatgtccgatgtggtagccggctgcgtgatgccgtatatcaaagactcgaaggaccgggacgccgtgtcgttggtgtgccgacggtggtacgagctggacgcgctcacgcgcgagcacgtgaccatcgcgctctgctacacgacgactcccgagaggctcaggaggcggttccggcagctcaagtcgctgaagctcaagggaaagccgagggcggcgatgtttaatctgataccggaggattggggaggctatgtgacgccgtgggtggaggagattgccgagtcgtttaagagcttgaaggccttgcatttccggagaatgattgtgagtgattccgacctggagctattggcgcggtcacgcggccgtgagctccaatcgcttaagctcgacaagtgctccggcttttcgactgacggccttgtccacatcgcccgcttctgcaggtattccaagtctacaacttgctggaattttcgtttatgctttgttgaattgtggaaatgttgggctgcacctaattttgcagcagtgtggattattcctccctctccccactttatacatcactactataacaactcccaagacagcatcttctccagccacaccactgttaccctcactgacaccaccgccctctcacctcccgccacgcgtactccctccacttcagcacccctcggtgacgccctatattttattgtcgtttatctttatcttttccctctcttctccccaaactccccctcttctcttctctcttttctcttttctctctctctctctctcactctgatccaatccctgctccacaaaaaccgttccccaaccgtcgccgccgatttctctccggccatctcctcatcggatcctcctccattcaggccatgtcttctttcactccccgtcatcgatcggattggttcgtcctcgccgccagctccgagtagatcttgcgtcgccggagtttctctattcagtttcggtccggcggttcttccgagataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0002213 GO:0002376 GO:0003006 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009625 GO:0009628 GO:0009639 GO:0009641 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009791 GO:0009814 GO:0009861 GO:0009867 GO:0009900 GO:0009901 GO:0009908 GO:0009909 GO:0009966 GO:0009987 GO:0010033 GO:0010118 GO:0010218 GO:0010498 GO:0010646 GO:0019538 GO:0019941 GO:0022414 GO:0022622 GO:0023051 GO:0023052 GO:0030163 GO:0031146 GO:0031347 GO:0031348 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0042221 GO:0042742 GO:0043161 GO:0043170 GO:0043207 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0045087 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048580 GO:0048583 GO:0048585 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051239 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0080134 GO:0090567 GO:0098542 GO:0099402 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701 GO:2000022 GO:2000026 GO:2000241
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
F-box-like

Protein Analysis

340

Amino Acids

38.04

Weight (kDa)

9.26

Isoelectric Point (pI)

58.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box_5 PF18511 3 - 43 3.1e-22 F-box
Transp_inhibit PF18791 63 - 108 1.9e-23 Transport inhibitor response 1 protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028850)

Species Orthologous Gene IDs
malus_domestica MD07G1213800.v1.1
rosa_multiflora Rmu_sc0001482.1_g000007

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 434
Acc36I ACCTGC 1 cut(s) 447
AccI GTMKAC 1 cut(s) 470
AccII CGCG 7 cut(s) 113, 121, 123, 140, 367, 375, 670
AccIII TCCGGA 1 cut(s) 324
AclWI GGATC 3 cut(s) 805, 878, 891
AcoI YGGCCR 2 cut(s) 376, 867
AcsI RAATTY 1 cut(s) 484
AcuI CTGAAG 2 cut(s) 221, 669
AcvI CACGTG 1 cut(s) 130
AcyI GRCGYC 3 cut(s) 72, 269, 702
AfaI GTAC 2 cut(s) 101, 673
AflII CTTAAG 1 cut(s) 395
AflIII ACRYGT 1 cut(s) 668
AgsI TTSAA 2 cut(s) 310, 506
AhdI GACNNNNNGTC 1 cut(s) 76
AjnI CCWGG 1 cut(s) 351
AluBI AGCT 8 cut(s) 106, 190, 205, 306, 358, 385, 400, 956
AluI AGCT 8 cut(s) 106, 190, 205, 306, 358, 385, 400, 956
Alw21I GWGCWC 3 cut(s) 129, 387, 413
AlwI GGATC 3 cut(s) 805, 878, 891
Ama87I CYCGRG 1 cut(s) 161
Aor13HI TCCGGA 1 cut(s) 324
AoxI GGCC 5 cut(s) 312, 376, 430, 867, 899
ApeKI GCWGC 4 cut(s) 33, 187, 524, 539
ApoI RAATTY 1 cut(s) 484
AspLEI GCGC 4 cut(s) 115, 123, 142, 367
AspS9I GGNCC 2 cut(s) 64, 1001
AsuC2I CCSGG 1 cut(s) 68
AsuHPI GGTGA 2 cut(s) 648, 710
AvaI CYCGRG 1 cut(s) 161
AvaII GGWCC 2 cut(s) 64, 1001
BamHI GGATCC 1 cut(s) 883
BanII GRGCYC 1 cut(s) 387
BbrPI CACGTG 1 cut(s) 130
BbsI GAAGAC 1 cut(s) 899
Bbv12I GWGCWC 3 cut(s) 129, 387, 413
BbvI GCAGC 4 cut(s) 20, 199, 511, 551
BccI CCATC 2 cut(s) 143, 878
BceAI ACGGC 5 cut(s) 28, 59, 256, 363, 445
BciT130I CCWGG 1 cut(s) 353
BcnI CCSGG 1 cut(s) 68
BfmI CTRYAG 1 cut(s) 454
BfrI CTTAAG 1 cut(s) 395
BfuAI ACCTGC 1 cut(s) 447
BglII AGATCT 1 cut(s) 965
BisI GCNGC 8 cut(s) 34, 188, 225, 376, 525, 540, 852, 950
BlsI GCNGC 8 cut(s) 35, 189, 226, 377, 526, 541, 853, 951
Bme1390I CCNGG 2 cut(s) 68, 353
Bme18I GGWCC 2 cut(s) 64, 1001
BmeRI GACNNNNNGTC 1 cut(s) 76
BmeT110I CYCGRG 1 cut(s) 161
BmgT120I GGNCC 2 cut(s) 64, 1001
BmiI GGNNCC 2 cut(s) 182, 885
BmrFI CCNGG 2 cut(s) 68, 353
BmsI GCATC 2 cut(s) 30, 615
BpiI GAAGAC 1 cut(s) 899
BpmI CTGGAG 2 cut(s) 374, 598
Bpu10I CCTNAGC 1 cut(s) 170
BpuEI CTTGAG 2 cut(s) 176, 191
BpuMI CCSGG 1 cut(s) 68
Bsa29I ATCGAT 1 cut(s) 927
BsaAI YACGTR 1 cut(s) 130
BsaHI GRCGYC 3 cut(s) 72, 269, 702
BsaJI CCNNGG 3 cut(s) 218, 272, 694
BsaWI WCCGGW 2 cut(s) 244, 324
BsaXI ACNNNNNCTCC 8 cut(s) 142, 172, 249, 279, 395, 425, 658, 688
Bse118I RCCGGY 1 cut(s) 29
Bse1I ACTGG 1 cut(s) 13
BseAI TCCGGA 1 cut(s) 324
BseBI CCWGG 1 cut(s) 353
BseCI ATCGAT 1 cut(s) 927
BseDI CCNNGG 3 cut(s) 218, 272, 694
BseMII CTCAG 1 cut(s) 184
BseNI ACTGG 1 cut(s) 13
BseRI GAGGAG 3 cut(s) 296, 865, 879
BseX3I CGGCCG 1 cut(s) 376
BseXI GCAGC 4 cut(s) 20, 199, 511, 551
BsgI GTGCAG 1 cut(s) 510
Bsh1236I CGCG 7 cut(s) 113, 121, 123, 140, 367, 375, 670
Bsh1285I CGRYCG 2 cut(s) 379, 931
BshFI GGCC 5 cut(s) 314, 378, 432, 869, 901
BshVI ATCGAT 1 cut(s) 927
BsiEI CGRYCG 2 cut(s) 379, 931
BsiHKAI GWGCWC 3 cut(s) 129, 387, 413
BsiHKCI CYCGRG 1 cut(s) 161
BsiSI CCGG 9 cut(s) 30, 67, 184, 245, 325, 414, 866, 978, 1004
BslFI GGGAC 1 cut(s) 83
BsmFI GGGAC 1 cut(s) 83
BsnI GGCC 5 cut(s) 314, 378, 432, 869, 901
BsoBI CYCGRG 1 cut(s) 161
Bsp1286I GDGCHC 3 cut(s) 129, 387, 413
Bsp13I TCCGGA 1 cut(s) 324
Bsp143I GATC 4 cut(s) 810, 883, 928, 965
BspANI GGCC 5 cut(s) 314, 378, 432, 869, 901
BspCNI CTCAG 1 cut(s) 183
BspDI ATCGAT 1 cut(s) 927
BspEI TCCGGA 1 cut(s) 324
BspFNI CGCG 7 cut(s) 113, 121, 123, 140, 367, 375, 670
BspLI GGNNCC 2 cut(s) 182, 885
BspMAI CTGCAG 1 cut(s) 458
BspMI ACCTGC 1 cut(s) 447
BspPI GGATC 3 cut(s) 805, 878, 891
BspTI CTTAAG 1 cut(s) 395
BsrFI RCCGGY 1 cut(s) 29
BsrI ACTGG 1 cut(s) 13
BssAI RCCGGY 1 cut(s) 29
BssECI CCNNGG 3 cut(s) 218, 272, 694
BssMI GATC 4 cut(s) 810, 883, 928, 965
BssNI GRCGYC 3 cut(s) 72, 269, 702
Bst2UI CCWGG 1 cut(s) 353
Bst4CI ACNGT 4 cut(s) 96, 628, 836, 847
Bst6I CTCTTC 3 cut(s) 749, 769, 774
BstACI GRCGYC 3 cut(s) 72, 269, 702
BstAFI CTTAAG 1 cut(s) 395
BstBAI YACGTR 1 cut(s) 130
BstC8I GCNNGC 4 cut(s) 31, 125, 448, 954
BstDEI CTNAG 1 cut(s) 170
BstDSI CCRYGG 1 cut(s) 272
BstFNI CGCG 7 cut(s) 113, 121, 123, 140, 367, 375, 670
BstHHI GCGC 4 cut(s) 115, 123, 142, 367
BstKTI GATC 4 cut(s) 813, 886, 931, 968
BstMBI GATC 4 cut(s) 810, 883, 928, 965
BstMCI CGRYCG 2 cut(s) 379, 931
BstMWI GCNNNNNNNGC 6 cut(s) 112, 175, 184, 196, 364, 391
BstNI CCWGG 1 cut(s) 353
BstSCI CCNGG 2 cut(s) 66, 351
BstSFI CTRYAG 1 cut(s) 454
BstUI CGCG 7 cut(s) 113, 121, 123, 140, 367, 375, 670
BstV1I GCAGC 4 cut(s) 20, 199, 511, 551
BstV2I GAAGAC 1 cut(s) 899
BstX2I RGATCY 2 cut(s) 883, 965
BstYI RGATCY 2 cut(s) 883, 965
BstZI CGGCCG 1 cut(s) 376
Bsu15I ATCGAT 1 cut(s) 927
BsuRI GGCC 5 cut(s) 314, 378, 432, 869, 901
BsuTUI ATCGAT 1 cut(s) 927
BtgI CCRYGG 1 cut(s) 272
BtgZI GCGATG 3 cut(s) 121, 242, 427
BtsI GCAGTG 1 cut(s) 549
BtsIMutI CAGTG 3 cut(s) 549, 624, 636
BveI ACCTGC 1 cut(s) 447
Cac8I GCNNGC 4 cut(s) 31, 125, 448, 954
CfoI GCGC 4 cut(s) 115, 123, 142, 367
Cfr10I RCCGGY 1 cut(s) 29
Cfr13I GGNCC 2 cut(s) 64, 1001
ClaI ATCGAT 1 cut(s) 927
CpoI CGGWCCG 1 cut(s) 1001
CseI GACGC 5 cut(s) 80, 119, 277, 710, 961
Csp6I GTAC 2 cut(s) 100, 672
CspI CGGWCCG 1 cut(s) 1001
CviAII CATG 1 cut(s) 903
CviQI GTAC 2 cut(s) 100, 672
DdeI CTNAG 1 cut(s) 170
DpnI GATC 4 cut(s) 812, 885, 930, 967
DpnII GATC 4 cut(s) 810, 883, 928, 965
DrdI GACNNNNNNGTC 1 cut(s) 434
DriI GACNNNNNGTC 1 cut(s) 76
DseDI GACNNNNNNGTC 1 cut(s) 434
EaeI YGGCCR 2 cut(s) 376, 867
EagI CGGCCG 1 cut(s) 376
Eam1104I CTCTTC 3 cut(s) 749, 769, 774
Eam1105I GACNNNNNGTC 1 cut(s) 76
EarI CTCTTC 3 cut(s) 749, 769, 774
Ecl136II GAGCTC 1 cut(s) 385
EclXI CGGCCG 1 cut(s) 376
Eco147I AGGCCT 1 cut(s) 314
Eco24I GRGCYC 1 cut(s) 387
Eco47I GGWCC 2 cut(s) 64, 1001
Eco52I CGGCCG 1 cut(s) 376
Eco53kI GAGCTC 1 cut(s) 385
Eco57I CTGAAG 2 cut(s) 221, 669
Eco72I CACGTG 1 cut(s) 130
Eco88I CYCGRG 1 cut(s) 161
EcoICRI GAGCTC 1 cut(s) 385
EcoRII CCWGG 1 cut(s) 351
EcoT38I GRGCYC 1 cut(s) 387
FaeI CATG 1 cut(s) 906
FaiI YATR 7 cut(s) 48, 264, 496, 575, 588, 709, 904
FaqI GGGAC 1 cut(s) 83
FatI CATG 1 cut(s) 902
FauI CCCGC 2 cut(s) 455, 670
FblI GTMKAC 1 cut(s) 470
Fnu4HI GCNGC 8 cut(s) 34, 188, 225, 376, 525, 540, 852, 950
FriOI GRGCYC 1 cut(s) 387
Fsp4HI GCNGC 8 cut(s) 34, 188, 225, 376, 525, 540, 852, 950
GlaI GCGC 4 cut(s) 114, 122, 141, 366
GluI GCNGC 8 cut(s) 34, 188, 225, 376, 525, 540, 852, 950
GsuI CTGGAG 2 cut(s) 374, 598
HaeIII GGCC 5 cut(s) 314, 378, 432, 869, 901
HapII CCGG 9 cut(s) 30, 67, 184, 245, 325, 414, 866, 978, 1004
HgaI GACGC 5 cut(s) 80, 119, 277, 710, 961
HhaI GCGC 4 cut(s) 115, 123, 142, 367
Hin1I GRCGYC 3 cut(s) 72, 269, 702
Hin1II CATG 1 cut(s) 906
Hin6I GCGC 4 cut(s) 113, 121, 140, 365
HinP1I GCGC 4 cut(s) 113, 121, 140, 365
HinfI GANTC 4 cut(s) 56, 157, 293, 344
HpaII CCGG 9 cut(s) 30, 67, 184, 245, 325, 414, 866, 978, 1004
HphI GGTGA 2 cut(s) 648, 710
Hpy166II GTNNAC 2 cut(s) 439, 471
Hpy188I TCNGA 8 cut(s) 19, 240, 349, 810, 883, 933, 960, 1017
Hpy188III TCNNGA 3 cut(s) 161, 172, 325
Hpy8I GTNNAC 2 cut(s) 439, 471
Hpy99I CGWCG 4 cut(s) 96, 157, 851, 977
HpyAV CCTTC 2 cut(s) 55, 304
HpyCH4III ACNGT 4 cut(s) 96, 628, 836, 847
HpyCH4IV ACGT 1 cut(s) 129
HpyCH4V TGCA 4 cut(s) 319, 456, 527, 539
HpyF10VI GCNNNNNNNGC 6 cut(s) 112, 175, 184, 196, 364, 391
HpyF3I CTNAG 1 cut(s) 170
HpySE526I ACGT 1 cut(s) 129
Hsp92I GRCGYC 3 cut(s) 72, 269, 702
Hsp92II CATG 1 cut(s) 906
HspAI GCGC 4 cut(s) 113, 121, 140, 365
Kpn2I TCCGGA 1 cut(s) 324
KroI GCCGGC 1 cut(s) 29
KroNI GCCGGC 1 cut(s) 31
Kzo9I GATC 4 cut(s) 810, 883, 928, 965
LmnI GCTCC 5 cut(s) 355, 390, 416, 828, 961
Lsp1109I GCAGC 4 cut(s) 20, 199, 511, 551
LweI GCATC 2 cut(s) 30, 615
MaeII ACGT 1 cut(s) 129
MaeIII GTNAC 5 cut(s) 130, 265, 369, 628, 698
MalI GATC 4 cut(s) 812, 885, 930, 967
MboI GATC 4 cut(s) 810, 883, 928, 965
MboII GAAGA 6 cut(s) 601, 736, 756, 761, 899, 1004
MflI RGATCY 2 cut(s) 883, 965
MhlI GDGCHC 3 cut(s) 129, 387, 413
MluCI AATT 3 cut(s) 484, 506, 532
MluI ACGCGT 1 cut(s) 668
MlyI GAGTC 3 cut(s) 50, 151, 302
MmeI TCCRAC 1 cut(s) 372
MroI TCCGGA 1 cut(s) 324
MroNI GCCGGC 1 cut(s) 29
MseI TTAA 3 cut(s) 234, 300, 396
MspCI CTTAAG 1 cut(s) 395
MspI CCGG 9 cut(s) 30, 67, 184, 245, 325, 414, 866, 978, 1004
MspR9I CCNGG 2 cut(s) 68, 353
MvaI CCWGG 1 cut(s) 353
MvnI CGCG 7 cut(s) 113, 121, 123, 140, 367, 375, 670
MwoI GCNNNNNNNGC 6 cut(s) 112, 175, 184, 196, 364, 391
NaeI GCCGGC 1 cut(s) 31
NciI CCSGG 1 cut(s) 68
NdeII GATC 4 cut(s) 810, 883, 928, 965
NgoMIV GCCGGC 1 cut(s) 29
NlaIII CATG 1 cut(s) 906
NlaIV GGNNCC 2 cut(s) 182, 885
NmeAIII GCCGAG 2 cut(s) 243, 316
NmuCI GTSAC 4 cut(s) 130, 265, 369, 698
PceI AGGCCT 1 cut(s) 314
PdiI GCCGGC 1 cut(s) 31
PfeI GAWTC 1 cut(s) 344
PkrI GCNGC 8 cut(s) 35, 189, 226, 377, 526, 541, 853, 951
Ple19I CGATCG 1 cut(s) 931
PleI GAGTC 3 cut(s) 50, 151, 301
PmaCI CACGTG 1 cut(s) 130
PmlI CACGTG 1 cut(s) 130
PpsI GAGTC 3 cut(s) 50, 151, 301
Ppu21I YACGTR 1 cut(s) 130
Psp124BI GAGCTC 1 cut(s) 387
Psp6I CCWGG 1 cut(s) 351
PspCI CACGTG 1 cut(s) 130
PspGI CCWGG 1 cut(s) 351
PspN4I GGNNCC 2 cut(s) 182, 885
PspPI GGNCC 2 cut(s) 64, 1001
PstI CTGCAG 1 cut(s) 458
PsuI RGATCY 2 cut(s) 883, 965
PvuI CGATCG 1 cut(s) 931
RsaI GTAC 2 cut(s) 101, 673
RsaNI GTAC 2 cut(s) 100, 672
Rsr2I CGGWCCG 1 cut(s) 1001
RsrII CGGWCCG 1 cut(s) 1001
SacI GAGCTC 1 cut(s) 387
SaqAI TTAA 3 cut(s) 234, 300, 396
SatI GCNGC 8 cut(s) 34, 188, 225, 376, 525, 540, 852, 950
Sau3AI GATC 4 cut(s) 810, 883, 928, 965
Sau96I GGNCC 2 cut(s) 64, 1001
SchI GAGTC 3 cut(s) 50, 151, 302
ScrFI CCNGG 2 cut(s) 68, 353
SduI GDGCHC 3 cut(s) 129, 387, 413
SfaNI GCATC 2 cut(s) 30, 615
SfcI CTRYAG 1 cut(s) 454
SinI GGWCC 2 cut(s) 64, 1001
SmlI CTYRAG 3 cut(s) 191, 206, 395
SmoI CTYRAG 3 cut(s) 191, 206, 395
Sse9I AATT 3 cut(s) 484, 506, 532
SseBI AGGCCT 1 cut(s) 314
SstI GAGCTC 1 cut(s) 387
StuI AGGCCT 1 cut(s) 314
StyD4I CCNGG 2 cut(s) 66, 351
TaaI ACNGT 4 cut(s) 96, 628, 836, 847
TaiI ACGT 1 cut(s) 132
TaqI TCGA 4 cut(s) 59, 402, 422, 927
TaqII GACCGA 1 cut(s) 989
TasI AATT 3 cut(s) 484, 506, 532
TauI GCSGC 4 cut(s) 227, 378, 854, 952
TfiI GAWTC 1 cut(s) 344
Tru1I TTAA 3 cut(s) 234, 300, 396
Tru9I TTAA 3 cut(s) 234, 300, 396
TscAI CASTG 3 cut(s) 549, 631, 643
TseFI GTSAC 4 cut(s) 130, 265, 369, 698
TseI GCWGC 4 cut(s) 33, 187, 524, 539
Tsp45I GTSAC 4 cut(s) 130, 265, 369, 698
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 3 cut(s) 549, 631, 643
Vha464I CTTAAG 1 cut(s) 395
VpaK11BI GGWCC 2 cut(s) 64, 1001
XapI RAATTY 1 cut(s) 484
XmiI GTMKAC 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.