Rmu_sc0001512.1_g000021

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001512.1
OG0023069
Physical Location & Seq
Forward (+)
86100 .. 86495
396 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 396 bp
atgtctgaaccatcgccggacctcgctatcctccgcggctacgagctccgtctcctccgctgcaccttcctctctcctcctccgccgtccgatactgaacaaccgtccgatcaaacctcgcccactcaccccctctcccctctaatctccgccctcctcacttccatcgagtccggccgatacctcgaagccctcacctccgctgacgcaaaccggctcgtcttcaaactcaccgattccgactcgctcggcgacgagttgctccgccgcgtggagtcgttcatatgcgaagaagctgaggataatgggaaggaccaggcctatagagtcgtcgtcgtactctgcattgccgtagctgcctcacttgctttcactcagtctaacctaaccgggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

131

Amino Acids

14.23

Weight (kDa)

4.42

Isoelectric Point (pI)

63.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023069)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001512.1_g000021 Rmu_sc0013496.1_g000001
rosa_samantha Rh1CG043100 Rh1DG026000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 36, 270
AciI CCGC 8 cut(s) 34, 36, 58, 83, 150, 201, 265, 268
AcoI YGGCCR 1 cut(s) 175
AfaI GTAC 1 cut(s) 339
AfiI CCNNNNNNNGG 1 cut(s) 271
AgsI TTSAA 1 cut(s) 226
AjnI CCWGG 1 cut(s) 315
AluBI AGCT 3 cut(s) 46, 296, 356
AluI AGCT 3 cut(s) 46, 296, 356
Alw21I GWGCWC 1 cut(s) 48
Alw26I GTCTC 1 cut(s) 56
AoxI GGCC 2 cut(s) 175, 318
ApeKI GCWGC 2 cut(s) 60, 356
AspS9I GGNCC 2 cut(s) 19, 313
AsuC2I CCSGG 1 cut(s) 391
AsuHPI GGTGA 3 cut(s) 119, 187, 223
AvaII GGWCC 2 cut(s) 19, 313
BanII GRGCYC 1 cut(s) 48
BbsI GAAGAC 1 cut(s) 214
Bbv12I GWGCWC 1 cut(s) 48
BbvCI CCTCAGC 1 cut(s) 297
BbvI GCAGC 2 cut(s) 47, 343
BccI CCATC 2 cut(s) 19, 173
BceAI ACGGC 2 cut(s) 70, 335
BciT130I CCWGG 1 cut(s) 317
BcnI CCSGG 1 cut(s) 391
BcoDI GTCTC 1 cut(s) 56
BfmI CTRYAG 1 cut(s) 322
BisI GCNGC 4 cut(s) 37, 61, 268, 357
BlsI GCNGC 4 cut(s) 38, 62, 269, 358
Bme1390I CCNGG 2 cut(s) 317, 391
Bme18I GGWCC 2 cut(s) 19, 313
BmgT120I GGNCC 2 cut(s) 19, 313
BmrFI CCNGG 2 cut(s) 317, 391
BpiI GAAGAC 1 cut(s) 214
Bpu10I CCTNAGC 1 cut(s) 297
BpuMI CCSGG 1 cut(s) 391
BsaJI CCNNGG 1 cut(s) 34
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bsc4I CCNNNNNNNGG 1 cut(s) 271
Bse118I RCCGGY 1 cut(s) 213
Bse3DI GCAATG 1 cut(s) 345
BseBI CCWGG 1 cut(s) 317
BseDI CCNNGG 1 cut(s) 34
BseLI CCNNNNNNNGG 1 cut(s) 271
BseMI GCAATG 1 cut(s) 345
BseMII CTCAG 2 cut(s) 288, 389
BseRI GAGGAG 4 cut(s) 44, 66, 69, 146
BseX3I CGGCCG 1 cut(s) 175
BseXI GCAGC 2 cut(s) 47, 343
BsgI GTGCAG 1 cut(s) 46
Bsh1236I CGCG 2 cut(s) 36, 270
Bsh1285I CGRYCG 1 cut(s) 178
BshFI GGCC 2 cut(s) 177, 320
BsiEI CGRYCG 1 cut(s) 178
BsiHKAI GWGCWC 1 cut(s) 48
BsiSI CCGG 4 cut(s) 17, 174, 214, 390
BslI CCNNNNNNNGG 1 cut(s) 271
BsmAI GTCTC 1 cut(s) 56
BsmBI CGTCTC 1 cut(s) 56
BsnI GGCC 2 cut(s) 177, 320
Bsp1286I GDGCHC 1 cut(s) 48
Bsp143I GATC 1 cut(s) 109
BspACI CCGC 8 cut(s) 34, 36, 58, 83, 150, 201, 265, 268
BspANI GGCC 2 cut(s) 177, 320
BspCNI CTCAG 2 cut(s) 289, 388
BspFNI CGCG 2 cut(s) 36, 270
BsrDI GCAATG 1 cut(s) 345
BsrFI RCCGGY 1 cut(s) 213
BssAI RCCGGY 1 cut(s) 213
BssECI CCNNGG 1 cut(s) 34
BssMI GATC 1 cut(s) 109
Bst2UI CCWGG 1 cut(s) 317
Bst4CI ACNGT 1 cut(s) 105
BstDEI CTNAG 2 cut(s) 297, 375
BstDSI CCRYGG 1 cut(s) 34
BstFNI CGCG 2 cut(s) 36, 270
BstKTI GATC 1 cut(s) 112
BstMAI GTCTC 1 cut(s) 56
BstMBI GATC 1 cut(s) 109
BstMCI CGRYCG 1 cut(s) 178
BstMWI GCNNNNNNNGC 2 cut(s) 356, 365
BstNI CCWGG 1 cut(s) 317
BstSCI CCNGG 2 cut(s) 315, 389
BstSFI CTRYAG 1 cut(s) 322
BstUI CGCG 2 cut(s) 36, 270
BstV1I GCAGC 2 cut(s) 47, 343
BstV2I GAAGAC 1 cut(s) 214
BstZI CGGCCG 1 cut(s) 175
BsuRI GGCC 2 cut(s) 177, 320
BtgI CCRYGG 1 cut(s) 34
Cfr10I RCCGGY 1 cut(s) 213
Cfr13I GGNCC 2 cut(s) 19, 313
Cfr42I CCGCGG 1 cut(s) 37
CseI GACGC 1 cut(s) 215
Csp6I GTAC 1 cut(s) 338
CviJI RGCY 8 cut(s) 39, 46, 177, 191, 217, 296, 320, 356
CviKI_1 RGCY 8 cut(s) 39, 46, 177, 191, 217, 296, 320, 356
CviQI GTAC 1 cut(s) 338
DdeI CTNAG 2 cut(s) 297, 375
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
EaeI YGGCCR 1 cut(s) 175
EagI CGGCCG 1 cut(s) 175
EciI GGCGGA 3 cut(s) 72, 139, 254
Ecl136II GAGCTC 1 cut(s) 46
EclXI CGGCCG 1 cut(s) 175
Eco147I AGGCCT 1 cut(s) 320
Eco24I GRGCYC 1 cut(s) 48
Eco47I GGWCC 2 cut(s) 19, 313
Eco52I CGGCCG 1 cut(s) 175
Eco53kI GAGCTC 1 cut(s) 46
EcoICRI GAGCTC 1 cut(s) 46
EcoRII CCWGG 1 cut(s) 315
EcoT38I GRGCYC 1 cut(s) 48
Esp3I CGTCTC 1 cut(s) 56
FaiI YATR 3 cut(s) 284, 286, 324
FauNDI CATATG 1 cut(s) 284
Fnu4HI GCNGC 4 cut(s) 37, 61, 268, 357
FriOI GRGCYC 1 cut(s) 48
Fsp4HI GCNGC 4 cut(s) 37, 61, 268, 357
GluI GCNGC 4 cut(s) 37, 61, 268, 357
HaeIII GGCC 2 cut(s) 177, 320
HapII CCGG 4 cut(s) 17, 174, 214, 390
HgaI GACGC 1 cut(s) 215
HinfI GANTC 5 cut(s) 170, 236, 242, 275, 327
HpaII CCGG 4 cut(s) 17, 174, 214, 390
HphI GGTGA 3 cut(s) 119, 187, 223
Hpy188I TCNGA 4 cut(s) 7, 91, 109, 241
Hpy99I CGWCG 3 cut(s) 257, 335, 338
HpyAV CCTTC 2 cut(s) 76, 304
HpyCH4III ACNGT 1 cut(s) 105
HpyCH4V TGCA 2 cut(s) 63, 345
HpyF10VI GCNNNNNNNGC 2 cut(s) 356, 365
HpyF3I CTNAG 2 cut(s) 297, 375
KspI CCGCGG 1 cut(s) 37
Kzo9I GATC 1 cut(s) 109
LmnI GCTCC 2 cut(s) 51, 267
LpnPI CCDG 5 cut(s) 30, 187, 227, 302, 329
Lsp1109I GCAGC 2 cut(s) 47, 343
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MboII GAAGA 2 cut(s) 214, 302
MhlI GDGCHC 1 cut(s) 48
MlyI GAGTC 4 cut(s) 179, 236, 284, 336
MmeI TCCRAC 1 cut(s) 264
MspA1I CMGCKG 3 cut(s) 36, 60, 203
MspI CCGG 4 cut(s) 17, 174, 214, 390
MspR9I CCNGG 2 cut(s) 317, 391
MvaI CCWGG 1 cut(s) 317
MvnI CGCG 2 cut(s) 36, 270
MwoI GCNNNNNNNGC 2 cut(s) 356, 365
NciI CCSGG 1 cut(s) 391
NdeI CATATG 1 cut(s) 284
NdeII GATC 1 cut(s) 109
NmeAIII GCCGAG 1 cut(s) 228
PceI AGGCCT 1 cut(s) 320
PfeI GAWTC 1 cut(s) 236
PkrI GCNGC 4 cut(s) 38, 62, 269, 358
PleI GAGTC 4 cut(s) 178, 236, 283, 335
PpsI GAGTC 4 cut(s) 178, 236, 283, 335
Psp124BI GAGCTC 1 cut(s) 48
Psp6I CCWGG 1 cut(s) 315
PspGI CCWGG 1 cut(s) 315
PspPI GGNCC 2 cut(s) 19, 313
RsaI GTAC 1 cut(s) 339
RsaNI GTAC 1 cut(s) 338
SacI GAGCTC 1 cut(s) 48
SacII CCGCGG 1 cut(s) 37
SatI GCNGC 4 cut(s) 37, 61, 268, 357
Sau3AI GATC 1 cut(s) 109
Sau96I GGNCC 2 cut(s) 19, 313
SchI GAGTC 4 cut(s) 179, 236, 284, 336
ScrFI CCNGG 2 cut(s) 317, 391
SduI GDGCHC 1 cut(s) 48
SetI ASST 9 cut(s) 24, 48, 68, 119, 186, 200, 298, 358, 387
SfcI CTRYAG 1 cut(s) 322
Sfr303I CCGCGG 1 cut(s) 37
SgrBI CCGCGG 1 cut(s) 37
SinI GGWCC 2 cut(s) 19, 313
SseBI AGGCCT 1 cut(s) 320
SsiI CCGC 8 cut(s) 34, 36, 58, 83, 150, 201, 265, 268
SstI GAGCTC 1 cut(s) 48
StuI AGGCCT 1 cut(s) 320
StyD4I CCNGG 2 cut(s) 315, 389
TaaI ACNGT 1 cut(s) 105
TaqI TCGA 2 cut(s) 168, 186
TauI GCSGC 2 cut(s) 39, 270
TfiI GAWTC 1 cut(s) 236
TseI GCWGC 2 cut(s) 60, 356
TspDTI ATGAA 1 cut(s) 271
TspGWI ACGGA 1 cut(s) 38
VpaK11BI GGWCC 2 cut(s) 19, 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.