Rh1DG026000

tetratricopeptide repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0023069
Physical Location & Seq
Forward (+)
4046435 .. 4046976
542 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG026000.1

Sequence Viewer

Length: 450 bp
ATGTCTGAACCGTCGCCGGACCTCGCTATCCTCCGCGGCTACGAGCTCCGTCTCCTCCGCTGCACCTTCCTCTCTCCGCCTCCGCCGTCCGATCCTGAACAACCGTCCGATCAAACCTCACCCACTCACCCCCTCTCCCCTCTAATCTCCGCCCTCCTCACTTCCATCGAGTCCGGCCGATACCTCGAAGCCCTCACCTCCGCCGACGCAAACCGGCTCGTCTTCAAGCTCACCGATTCCGACTCCCTAGGCGACCACGACGGCGACCGAGTCTACTCCGAGTTGCTCCGTCGCGTGAAGTCGTTCATATGGGAAGAAGCTGAGGATAATGGGAAGGACCAGGCCTATAGAGTCGTCGTCGTACTCTGCATTGCCGTAGCTGCCTTACTTGCTTTCACTCAGTCTAACCTAACCGGACCTTTGGATGGGGGCTGCCAAGGTGTCCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_2 TPR_8

Protein Analysis

149

Amino Acids

16.24

Weight (kDa)

4.64

Isoelectric Point (pI)

56.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023069)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001512.1_g000021 Rmu_sc0013496.1_g000001
rosa_samantha Rh1CG043100 Rh1DG026000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 273
AccII CGCG 2 cut(s) 36, 294
AciI CCGC 7 cut(s) 34, 36, 58, 77, 83, 150, 201
AclWI GGATC 1 cut(s) 86
AcoI YGGCCR 1 cut(s) 175
AfaI GTAC 1 cut(s) 363
AfiI CCNNNNNNNGG 1 cut(s) 425
AgsI TTSAA 1 cut(s) 226
AjnI CCWGG 1 cut(s) 339
AluBI AGCT 4 cut(s) 46, 229, 320, 380
AluI AGCT 4 cut(s) 46, 229, 320, 380
Alw21I GWGCWC 1 cut(s) 48
Alw26I GTCTC 1 cut(s) 56
AlwI GGATC 1 cut(s) 86
AoxI GGCC 2 cut(s) 175, 342
ApeKI GCWGC 3 cut(s) 60, 380, 432
Asp700I GAANNNNTTC 1 cut(s) 302
AspA2I CCTAGG 1 cut(s) 247
AspS9I GGNCC 3 cut(s) 19, 337, 416
AsuHPI GGTGA 4 cut(s) 111, 119, 187, 223
AvaII GGWCC 3 cut(s) 19, 337, 416
AvrII CCTAGG 1 cut(s) 247
BanII GRGCYC 1 cut(s) 48
BbsI GAAGAC 1 cut(s) 214
Bbv12I GWGCWC 1 cut(s) 48
BbvCI CCTCAGC 1 cut(s) 321
BbvI GCAGC 3 cut(s) 47, 367, 419
BccI CCATC 2 cut(s) 173, 419
BceAI ACGGC 3 cut(s) 70, 277, 359
BciT130I CCWGG 1 cut(s) 341
BcoDI GTCTC 1 cut(s) 56
BfaI CTAG 1 cut(s) 248
BfmI CTRYAG 1 cut(s) 346
BisI GCNGC 4 cut(s) 37, 61, 381, 433
BlnI CCTAGG 1 cut(s) 247
BlsI GCNGC 4 cut(s) 38, 62, 382, 434
Bme1390I CCNGG 1 cut(s) 341
Bme18I GGWCC 3 cut(s) 19, 337, 416
BmgT120I GGNCC 3 cut(s) 19, 337, 416
BmrFI CCNGG 1 cut(s) 341
BpiI GAAGAC 1 cut(s) 214
Bpu10I CCTNAGC 1 cut(s) 321
BsaJI CCNNGG 3 cut(s) 34, 247, 436
BsaWI WCCGGW 1 cut(s) 413
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bsc4I CCNNNNNNNGG 1 cut(s) 425
Bse118I RCCGGY 1 cut(s) 213
Bse3DI GCAATG 1 cut(s) 369
BseBI CCWGG 1 cut(s) 341
BseDI CCNNGG 3 cut(s) 34, 247, 436
BseGI GGATG 1 cut(s) 430
BseLI CCNNNNNNNGG 1 cut(s) 425
BseMI GCAATG 1 cut(s) 369
BseMII CTCAG 2 cut(s) 312, 413
BseRI GAGGAG 2 cut(s) 44, 146
BseX3I CGGCCG 1 cut(s) 175
BseXI GCAGC 3 cut(s) 47, 367, 419
BsgI GTGCAG 1 cut(s) 46
Bsh1236I CGCG 2 cut(s) 36, 294
Bsh1285I CGRYCG 2 cut(s) 178, 268
BshFI GGCC 2 cut(s) 177, 344
BsiEI CGRYCG 2 cut(s) 178, 268
BsiHKAI GWGCWC 1 cut(s) 48
BsiSI CCGG 4 cut(s) 17, 174, 214, 414
BslI CCNNNNNNNGG 1 cut(s) 425
BsmAI GTCTC 1 cut(s) 56
BsmBI CGTCTC 1 cut(s) 56
BsnI GGCC 2 cut(s) 177, 344
Bsp1286I GDGCHC 1 cut(s) 48
Bsp143I GATC 2 cut(s) 91, 109
BspACI CCGC 7 cut(s) 34, 36, 58, 77, 83, 150, 201
BspANI GGCC 2 cut(s) 177, 344
BspCNI CTCAG 2 cut(s) 313, 412
BspFNI CGCG 2 cut(s) 36, 294
BspPI GGATC 1 cut(s) 86
BsrDI GCAATG 1 cut(s) 369
BsrFI RCCGGY 1 cut(s) 213
BssAI RCCGGY 1 cut(s) 213
BssECI CCNNGG 3 cut(s) 34, 247, 436
BssMI GATC 2 cut(s) 91, 109
BssT1I CCWWGG 2 cut(s) 247, 436
Bst2UI CCWGG 1 cut(s) 341
Bst4CI ACNGT 2 cut(s) 12, 105
BstDEI CTNAG 2 cut(s) 321, 399
BstDSI CCRYGG 1 cut(s) 34
BstF5I GGATG 1 cut(s) 430
BstFNI CGCG 2 cut(s) 36, 294
BstKTI GATC 2 cut(s) 94, 112
BstMAI GTCTC 1 cut(s) 56
BstMBI GATC 2 cut(s) 91, 109
BstMCI CGRYCG 2 cut(s) 178, 268
BstMWI GCNNNNNNNGC 2 cut(s) 380, 389
BstNI CCWGG 1 cut(s) 341
BstSCI CCNGG 1 cut(s) 339
BstSFI CTRYAG 1 cut(s) 346
BstUI CGCG 2 cut(s) 36, 294
BstV1I GCAGC 3 cut(s) 47, 367, 419
BstV2I GAAGAC 1 cut(s) 214
BstZI CGGCCG 1 cut(s) 175
BsuRI GGCC 2 cut(s) 177, 344
BtgI CCRYGG 1 cut(s) 34
BtsCI GGATG 1 cut(s) 430
Cfr10I RCCGGY 1 cut(s) 213
Cfr13I GGNCC 3 cut(s) 19, 337, 416
Cfr42I CCGCGG 1 cut(s) 37
CseI GACGC 1 cut(s) 215
Csp6I GTAC 1 cut(s) 362
CviQI GTAC 1 cut(s) 362
DdeI CTNAG 2 cut(s) 321, 399
DpnI GATC 2 cut(s) 93, 111
DpnII GATC 2 cut(s) 91, 109
EaeI YGGCCR 1 cut(s) 175
EagI CGGCCG 1 cut(s) 175
EciI GGCGGA 4 cut(s) 66, 72, 139, 190
Ecl136II GAGCTC 1 cut(s) 46
EclXI CGGCCG 1 cut(s) 175
Eco130I CCWWGG 2 cut(s) 247, 436
Eco147I AGGCCT 1 cut(s) 344
Eco24I GRGCYC 1 cut(s) 48
Eco47I GGWCC 3 cut(s) 19, 337, 416
Eco52I CGGCCG 1 cut(s) 175
Eco53kI GAGCTC 1 cut(s) 46
EcoICRI GAGCTC 1 cut(s) 46
EcoRII CCWGG 1 cut(s) 339
EcoT14I CCWWGG 2 cut(s) 247, 436
EcoT38I GRGCYC 1 cut(s) 48
ErhI CCWWGG 2 cut(s) 247, 436
Esp3I CGTCTC 1 cut(s) 56
FaiI YATR 3 cut(s) 308, 310, 348
FauNDI CATATG 1 cut(s) 308
FblI GTMKAC 1 cut(s) 273
Fnu4HI GCNGC 4 cut(s) 37, 61, 381, 433
FokI GGATG 1 cut(s) 437
FriOI GRGCYC 1 cut(s) 48
Fsp4HI GCNGC 4 cut(s) 37, 61, 381, 433
FspBI CTAG 1 cut(s) 248
GluI GCNGC 4 cut(s) 37, 61, 381, 433
HaeIII GGCC 2 cut(s) 177, 344
HapII CCGG 4 cut(s) 17, 174, 214, 414
HgaI GACGC 1 cut(s) 215
HinfI GANTC 5 cut(s) 170, 236, 242, 270, 351
HpaII CCGG 4 cut(s) 17, 174, 214, 414
HphI GGTGA 4 cut(s) 111, 119, 187, 223
Hpy166II GTNNAC 1 cut(s) 274
Hpy188I TCNGA 5 cut(s) 7, 91, 109, 241, 280
Hpy188III TCNNGA 1 cut(s) 95
Hpy8I GTNNAC 1 cut(s) 274
Hpy99I CGWCG 6 cut(s) 16, 209, 263, 294, 359, 362
HpyAV CCTTC 2 cut(s) 76, 328
HpyCH4III ACNGT 2 cut(s) 12, 105
HpyCH4V TGCA 2 cut(s) 63, 369
HpyF10VI GCNNNNNNNGC 2 cut(s) 380, 389
HpyF3I CTNAG 2 cut(s) 321, 399
KspI CCGCGG 1 cut(s) 37
Kzo9I GATC 2 cut(s) 91, 109
LmnI GCTCC 2 cut(s) 51, 291
LpnPI CCDG 7 cut(s) 30, 108, 187, 227, 326, 353, 427
Lsp1109I GCAGC 3 cut(s) 47, 367, 419
MaeI CTAG 1 cut(s) 248
MalI GATC 2 cut(s) 93, 111
MboI GATC 2 cut(s) 91, 109
MboII GAAGA 2 cut(s) 214, 326
MhlI GDGCHC 1 cut(s) 48
MlyI GAGTC 4 cut(s) 179, 236, 279, 360
MmeI TCCRAC 1 cut(s) 264
MroXI GAANNNNTTC 1 cut(s) 302
MspA1I CMGCKG 2 cut(s) 36, 60
MspI CCGG 4 cut(s) 17, 174, 214, 414
MspR9I CCNGG 1 cut(s) 341
MvaI CCWGG 1 cut(s) 341
MvnI CGCG 2 cut(s) 36, 294
MwoI GCNNNNNNNGC 2 cut(s) 380, 389
NdeI CATATG 1 cut(s) 308
NdeII GATC 2 cut(s) 91, 109
PceI AGGCCT 1 cut(s) 344
PdmI GAANNNNTTC 1 cut(s) 302
PfeI GAWTC 1 cut(s) 236
PflFI GACNNNGTC 1 cut(s) 269
PkrI GCNGC 4 cut(s) 38, 62, 382, 434
PleI GAGTC 4 cut(s) 178, 236, 278, 359
PpsI GAGTC 4 cut(s) 178, 236, 278, 359
Psp124BI GAGCTC 1 cut(s) 48
Psp6I CCWGG 1 cut(s) 339
PspGI CCWGG 1 cut(s) 339
PspPI GGNCC 3 cut(s) 19, 337, 416
PsyI GACNNNGTC 1 cut(s) 269
RsaI GTAC 1 cut(s) 363
RsaNI GTAC 1 cut(s) 362
SacI GAGCTC 1 cut(s) 48
SacII CCGCGG 1 cut(s) 37
SatI GCNGC 4 cut(s) 37, 61, 381, 433
Sau3AI GATC 2 cut(s) 91, 109
Sau96I GGNCC 3 cut(s) 19, 337, 416
SchI GAGTC 4 cut(s) 179, 236, 279, 360
ScrFI CCNGG 1 cut(s) 341
SduI GDGCHC 1 cut(s) 48
SfcI CTRYAG 1 cut(s) 346
Sfr303I CCGCGG 1 cut(s) 37
SgrBI CCGCGG 1 cut(s) 37
SinI GGWCC 3 cut(s) 19, 337, 416
SseBI AGGCCT 1 cut(s) 344
SsiI CCGC 7 cut(s) 34, 36, 58, 77, 83, 150, 201
SspMI CTAG 1 cut(s) 248
SstI GAGCTC 1 cut(s) 48
StuI AGGCCT 1 cut(s) 344
StyD4I CCNGG 1 cut(s) 339
StyI CCWWGG 2 cut(s) 247, 436
TaaI ACNGT 2 cut(s) 12, 105
TaqI TCGA 2 cut(s) 168, 186
TaqII GACCGA 1 cut(s) 282
TauI GCSGC 1 cut(s) 39
TfiI GAWTC 1 cut(s) 236
TseI GCWGC 3 cut(s) 60, 380, 432
TspDTI ATGAA 1 cut(s) 295
TspGWI ACGGA 3 cut(s) 38, 278, 434
Tth111I GACNNNGTC 1 cut(s) 269
VpaK11BI GGWCC 3 cut(s) 19, 337, 416
XmaJI CCTAGG 1 cut(s) 247
XmiI GTMKAC 1 cut(s) 273
XmnI GAANNNNTTC 1 cut(s) 302
XspI CTAG 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.