Rmu_sc0001557.1_g000002

General transcription factor IIE subunit

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001557.1
Physical Location & Seq
Reverse (-)
6509 .. 7350
842 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001557.1_g000002.1.cds

Sequence Viewer

Length: 273 bp
atgagtatcgagcctttcaataggttggtgaagctcgcggcgagggcgttctacgatgacataaccacgaaaggggataaccagcccaagactggccggagcgacaatcggggaattgccgtggttgtgctcgacgcgctctcaaggcgacaatgggtgagagaagaggatttggcaaaggacttgaaactgcactcgaagcaacttcgtcgtactttgcgattttttgaggaggagaaactggtcactcgagaccataggaaggagtgttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

90

Amino Acids

10.63

Weight (kDa)

9.72

Isoelectric Point (pI)

68.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0023073)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001557.1_g000001 Rmu_sc0001557.1_g000002
rosa_samantha Rh7CG068700 Rh7DG068100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 38, 137
AciI CCGC 1 cut(s) 38
AcoI YGGCCR 1 cut(s) 94
AfaI GTAC 1 cut(s) 214
AfiI CCNNNNNNNGG 3 cut(s) 72, 92, 262
AgsI TTSAA 2 cut(s) 19, 187
AluBI AGCT 1 cut(s) 34
AluI AGCT 1 cut(s) 34
Alw21I GWGCWC 1 cut(s) 132
Alw26I GTCTC 1 cut(s) 246
Ama87I CYCGRG 1 cut(s) 249
AoxI GGCC 1 cut(s) 94
AspLEI GCGC 1 cut(s) 139
AsuHPI GGTGA 2 cut(s) 40, 169
AvaI CYCGRG 1 cut(s) 249
Bbv12I GWGCWC 1 cut(s) 132
BceAI ACGGC 1 cut(s) 104
BcgI CGANNNNNNTGC 2 cut(s) 191, 225
BcoDI GTCTC 1 cut(s) 246
BisI GCNGC 1 cut(s) 39
BlsI GCNGC 1 cut(s) 40
BmeT110I CYCGRG 1 cut(s) 249
BpuEI CTTGAG 1 cut(s) 127
BsaI GGTCTC 1 cut(s) 246
BsaJI CCNNGG 1 cut(s) 120
Bsc4I CCNNNNNNNGG 3 cut(s) 72, 92, 262
Bse1I ACTGG 2 cut(s) 97, 246
BseDI CCNNGG 1 cut(s) 120
BseLI CCNNNNNNNGG 3 cut(s) 72, 92, 262
BseNI ACTGG 2 cut(s) 97, 246
BseRI GAGGAG 2 cut(s) 245, 248
BsgI GTGCAG 1 cut(s) 176
Bsh1236I CGCG 2 cut(s) 38, 137
BshFI GGCC 1 cut(s) 96
BsiHKAI GWGCWC 1 cut(s) 132
BsiHKCI CYCGRG 1 cut(s) 249
BsiSI CCGG 1 cut(s) 97
BslI CCNNNNNNNGG 3 cut(s) 72, 92, 262
BsmAI GTCTC 1 cut(s) 246
BsnI GGCC 1 cut(s) 96
Bso31I GGTCTC 1 cut(s) 246
BsoBI CYCGRG 1 cut(s) 249
Bsp1286I GDGCHC 1 cut(s) 132
BspACI CCGC 1 cut(s) 38
BspANI GGCC 1 cut(s) 96
BspFNI CGCG 2 cut(s) 38, 137
BspTNI GGTCTC 1 cut(s) 246
BsrI ACTGG 2 cut(s) 97, 246
BssECI CCNNGG 1 cut(s) 120
Bst6I CTCTTC 1 cut(s) 159
BstC8I GCNNGC 1 cut(s) 36
BstDSI CCRYGG 1 cut(s) 120
BstFNI CGCG 2 cut(s) 38, 137
BstHHI GCGC 1 cut(s) 139
BstMAI GTCTC 1 cut(s) 246
BstMWI GCNNNNNNNGC 4 cut(s) 44, 136, 145, 199
BstUI CGCG 2 cut(s) 38, 137
BsuRI GGCC 1 cut(s) 96
BtgI CCRYGG 1 cut(s) 120
Cac8I GCNNGC 1 cut(s) 36
CfoI GCGC 1 cut(s) 139
CseI GACGC 1 cut(s) 143
Csp6I GTAC 1 cut(s) 213
CviJI RGCY 4 cut(s) 13, 34, 85, 96
CviKI_1 RGCY 4 cut(s) 13, 34, 85, 96
CviQI GTAC 1 cut(s) 213
EaeI YGGCCR 1 cut(s) 94
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco31I GGTCTC 1 cut(s) 246
Eco88I CYCGRG 1 cut(s) 249
FaiI YATR 2 cut(s) 62, 258
Fnu4HI GCNGC 1 cut(s) 39
Fsp4HI GCNGC 1 cut(s) 39
GlaI GCGC 1 cut(s) 138
GluI GCNGC 1 cut(s) 39
HaeIII GGCC 1 cut(s) 96
HapII CCGG 1 cut(s) 97
HgaI GACGC 1 cut(s) 143
HhaI GCGC 1 cut(s) 139
Hin6I GCGC 1 cut(s) 137
HinP1I GCGC 1 cut(s) 137
HpaII CCGG 1 cut(s) 97
HphI GGTGA 2 cut(s) 40, 169
Hpy188III TCNNGA 1 cut(s) 251
Hpy99I CGWCG 2 cut(s) 137, 213
HpyAV CCTTC 1 cut(s) 256
HpyCH4V TGCA 1 cut(s) 193
HpyF10VI GCNNNNNNNGC 4 cut(s) 44, 136, 145, 199
HspAI GCGC 1 cut(s) 137
LmnI GCTCC 1 cut(s) 99
LpnPI CCDG 4 cut(s) 78, 95, 110, 227
MaeIII GTNAC 1 cut(s) 244
MboII GAAGA 1 cut(s) 176
MhlI GDGCHC 1 cut(s) 132
MluCI AATT 1 cut(s) 114
MnlI CCTC 4 cut(s) 36, 160, 223, 226
MseI TTAA 1 cut(s) 271
MspI CCGG 1 cut(s) 97
MvnI CGCG 2 cut(s) 38, 137
MwoI GCNNNNNNNGC 4 cut(s) 44, 136, 145, 199
NmuCI GTSAC 1 cut(s) 244
PaeR7I CTCGAG 1 cut(s) 249
PcsI WCGNNNNNNNCGW 1 cut(s) 217
PkrI GCNGC 1 cut(s) 40
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
SaqAI TTAA 1 cut(s) 271
SatI GCNGC 1 cut(s) 39
SduI GDGCHC 1 cut(s) 132
SetI ASST 2 cut(s) 26, 36
Sfr274I CTCGAG 1 cut(s) 249
SlaI CTCGAG 1 cut(s) 249
SmlI CTYRAG 2 cut(s) 142, 249
SmoI CTYRAG 2 cut(s) 142, 249
Sse9I AATT 1 cut(s) 114
SsiI CCGC 1 cut(s) 38
TaqI TCGA 4 cut(s) 9, 132, 197, 250
TasI AATT 1 cut(s) 114
TauI GCSGC 1 cut(s) 41
Tru1I TTAA 1 cut(s) 271
Tru9I TTAA 1 cut(s) 271
TseFI GTSAC 1 cut(s) 244
Tsp45I GTSAC 1 cut(s) 244
XcmI CCANNNNNNNNNTGG 1 cut(s) 89
XhoI CTCGAG 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.