Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001609.1

Orthogroup ID

OG0031143

Physical Location & Seq

Genomic Coordinates Forward (+)

113015 .. 115652

Gene Structure 2638 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ctgttcggctgcaccaatagcttgcctacgaggtcaagtgctagcactgacacgaagggccaccagacgagagaaatgacgtcaaaacgaactgaggaccaagctaggagcctcggcatccctatctcgatcctcgacgaccacccgaaaatcaatctagccatcgacaacgacaacgagttcaaccctaatctggatttggtcaagggtggcagctgcgcgttgttaaaggataagatggtggaggccgcgtcagagaaggaaggatgtagtggatatgcagaccaagtgattagctttttttgggattttggtggtggtggtgtggaggtgagtgttggaacctctaatttgtacttgttatatgttgtgcaaaatgtttattggtgtattgttagaatggtgaaatggataattgatagaggtttagaggtcggagagagtggaatcggagatgggaggtggggcaaaaccctaccagcccaaaatgtcaagtccaaggcagcacaagggagaggtccatacaaggttcagcaagcccagaatggcttgggcccagtttccatctgcctcccaccgtcgcacgacaactttgggctagcgccgcctcaacctgtgccgccacgcaccgcaccgaaccaccacgaaacctgcacaacatcgacccgtatccgtacgacctgtgccgccgttgcaacagaatcaagaaacccactatgccatgccaccggttcgggacgccatcaactatgcacagcacaacgaccgcgtttagagacttccacgagaactagacgccgaaaccaaacctgcaaaaaccttaattcgaacatccaaagagcttcctcgagcaatatcatcaatactcgtccggcagaaaaccacaacaactgtgaggccgcaggccagcccagacgccaagccgccaccaaacgagagagatctctcagttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0015977 GO:0015979 GO:0016020 GO:0016051 GO:0019253 GO:0019685 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0071704 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Rib_5-P_isom_A

Protein Analysis

317

Amino Acids

34.56

Weight (kDa)

9.26

Isoelectric Point (pI)

46.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rib_5-P_isom_A	PF06026	27 - 87	4.4e-13	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031143)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001609.1_g000025 Rmu_sc0017268.1_g000003

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	83
Acc36I	ACCTGC	2 cut(s)	659, 818
AccII	CGCG	3 cut(s)	221, 251, 769
AciI	CCGC	8 cut(s)	249, 605, 620, 630, 687, 767, 900, 924
AclWI	GGATC	1 cut(s)	124
AcyI	GRCGYC	4 cut(s)	80, 739, 796, 916
AfaI	GTAC	2 cut(s)	356, 676
AfiI	CCNNNNNNNGG	1 cut(s)	193
AgeI	ACCGGT	1 cut(s)	728
AgsI	TTSAA	1 cut(s)	184
AluBI	AGCT	5 cut(s)	21, 104, 216, 297, 842
AluI	AGCT	5 cut(s)	21, 104, 216, 297, 842
Alw26I	GTCTC	1 cut(s)	770
AlwI	GGATC	1 cut(s)	124
Ama87I	CYCGRG	1 cut(s)	847
AoxI	GGCC	5 cut(s)	58, 246, 553, 897, 904
ApaI	GGGCCC	1 cut(s)	557
ApeKI	GCWGC	4 cut(s)	9, 213, 216, 503
AsiGI	ACCGGT	1 cut(s)	728
AspLEI	GCGC	2 cut(s)	221, 604
AspS9I	GGNCC	5 cut(s)	58, 97, 518, 553, 554
AsuHPI	GGTGA	2 cut(s)	343, 415
AsuII	TTCGAA	1 cut(s)	827
AsuNHI	GCTAGC	2 cut(s)	41, 598
AvaI	CYCGRG	1 cut(s)	847
AvaII	GGWCC	2 cut(s)	97, 518
BaeGI	GKGCMC	1 cut(s)	557
BanII	GRGCYC	1 cut(s)	557
BauI	CACGAG	1 cut(s)	784
BbvI	GCAGC	3 cut(s)	203, 225, 515
BccI	CCATC	5 cut(s)	170, 232, 449, 572, 750
BceAI	ACGGC	1 cut(s)	674
BciVI	GTATCC	1 cut(s)	680
BcoDI	GTCTC	1 cut(s)	770
BfaI	CTAG	5 cut(s)	42, 105, 158, 599, 792
BfoI	RGCGCY	1 cut(s)	605
BfuAI	ACCTGC	2 cut(s)	659, 818
BfuI	GTATCC	1 cut(s)	680
BglII	AGATCT	1 cut(s)	941
Bme18I	GGWCC	2 cut(s)	97, 518
BmeT110I	CYCGRG	1 cut(s)	847
BmgT120I	GGNCC	5 cut(s)	58, 97, 518, 553, 554
BmiI	GGNNCC	3 cut(s)	110, 343, 555
BmrI	ACTGGG	1 cut(s)	551
BmsI	GCATC	1 cut(s)	126
BmtI	GCTAGC	2 cut(s)	45, 602
BmuI	ACTGGG	1 cut(s)	551
Bpu14I	TTCGAA	1 cut(s)	827
BsaHI	GRCGYC	4 cut(s)	80, 739, 796, 916
BsaJI	CCNNGG	2 cut(s)	112, 498
BsaWI	WCCGGW	1 cut(s)	728
BsaXI	ACNNNNNCTCC	2 cut(s)	236, 266
Bsc4I	CCNNNNNNNGG	1 cut(s)	193
Bse118I	RCCGGY	1 cut(s)	728
Bse1I	ACTGG	1 cut(s)	557
BseDI	CCNNGG	2 cut(s)	112, 498
BseGI	GGATG	3 cut(s)	117, 272, 831
BseLI	CCNNNNNNNGG	1 cut(s)	193
BseMII	CTCAG	1 cut(s)	84
BseNI	ACTGG	1 cut(s)	557
BseSI	GKGCMC	1 cut(s)	557
BseXI	GCAGC	3 cut(s)	203, 225, 515
BsgI	GTGCAG	1 cut(s)	637
Bsh1236I	CGCG	3 cut(s)	221, 251, 769
Bsh1285I	CGRYCG	1 cut(s)	767
BshFI	GGCC	5 cut(s)	60, 248, 555, 899, 906
BshTI	ACCGGT	1 cut(s)	728
BsiEI	CGRYCG	1 cut(s)	767
BsiHKCI	CYCGRG	1 cut(s)	847
BsiSI	CCGG	2 cut(s)	729, 872
BsiWI	CGTACG	1 cut(s)	674
BslFI	GGGAC	1 cut(s)	750
BslI	CCNNNNNNNGG	1 cut(s)	193
BsmAI	GTCTC	1 cut(s)	770
BsmFI	GGGAC	1 cut(s)	750
BsnI	GGCC	5 cut(s)	60, 248, 555, 899, 906
BsoBI	CYCGRG	1 cut(s)	847
Bsp119I	TTCGAA	1 cut(s)	827
Bsp120I	GGGCCC	1 cut(s)	553
Bsp1286I	GDGCHC	1 cut(s)	557
Bsp143I	GATC	2 cut(s)	129, 941
BspACI	CCGC	8 cut(s)	249, 605, 620, 630, 687, 767, 900, 924
BspANI	GGCC	5 cut(s)	60, 248, 555, 899, 906
BspCNI	CTCAG	1 cut(s)	85
BspFNI	CGCG	3 cut(s)	221, 251, 769
BspLI	GGNNCC	3 cut(s)	110, 343, 555
BspMI	ACCTGC	2 cut(s)	659, 818
BspOI	GCTAGC	2 cut(s)	45, 602
BspPI	GGATC	1 cut(s)	124
BspT104I	TTCGAA	1 cut(s)	827
BsrFI	RCCGGY	1 cut(s)	728
BsrI	ACTGG	1 cut(s)	557
BssAI	RCCGGY	1 cut(s)	728
BssECI	CCNNGG	2 cut(s)	112, 498
BssMI	GATC	2 cut(s)	129, 941
BssNI	GRCGYC	4 cut(s)	80, 739, 796, 916
BssSI	CACGAG	1 cut(s)	784
BssT1I	CCWWGG	1 cut(s)	498
Bst2BI	CACGAG	1 cut(s)	784
Bst4CI	ACNGT	2 cut(s)	579, 893
BstACI	GRCGYC	4 cut(s)	80, 739, 796, 916
BstBI	TTCGAA	1 cut(s)	827
BstC8I	GCNNGC	6 cut(s)	23, 43, 537, 600, 904, 908
BstDEI	CTNAG	2 cut(s)	93, 947
BstF5I	GGATG	3 cut(s)	117, 272, 831
BstFNI	CGCG	3 cut(s)	221, 251, 769
BstH2I	RGCGCY	1 cut(s)	605
BstHHI	GCGC	2 cut(s)	221, 604
BstKTI	GATC	2 cut(s)	132, 944
BstMAI	GTCTC	1 cut(s)	770
BstMBI	GATC	2 cut(s)	129, 941
BstMCI	CGRYCG	1 cut(s)	767
BstMWI	GCNNNNNNNGC	3 cut(s)	18, 604, 692
BstSLI	GKGCMC	1 cut(s)	557
BstUI	CGCG	3 cut(s)	221, 251, 769
BstV1I	GCAGC	3 cut(s)	203, 225, 515
BstX2I	RGATCY	1 cut(s)	941
BstYI	RGATCY	1 cut(s)	941
BsuI	GTATCC	1 cut(s)	680
BsuRI	GGCC	5 cut(s)	60, 248, 555, 899, 906
BtsCI	GGATG	3 cut(s)	117, 272, 831
BtsIMutI	CAGTG	1 cut(s)	45
BveI	ACCTGC	2 cut(s)	659, 818
Cac8I	GCNNGC	6 cut(s)	23, 43, 537, 600, 904, 908
CfoI	GCGC	2 cut(s)	221, 604
Cfr10I	RCCGGY	1 cut(s)	728
Cfr13I	GGNCC	5 cut(s)	58, 97, 518, 553, 554
CseI	GACGC	4 cut(s)	240, 747, 804, 924
Csp6I	GTAC	2 cut(s)	355, 675
CspAI	ACCGGT	1 cut(s)	728
CviAII	CATG	1 cut(s)	722
CviQI	GTAC	2 cut(s)	355, 675
DdeI	CTNAG	2 cut(s)	93, 947
DpnI	GATC	2 cut(s)	131, 943
DpnII	GATC	2 cut(s)	129, 941
Eco130I	CCWWGG	1 cut(s)	498
Eco24I	GRGCYC	1 cut(s)	557
Eco47I	GGWCC	2 cut(s)	97, 518
Eco88I	CYCGRG	1 cut(s)	847
EcoT14I	CCWWGG	1 cut(s)	498
EcoT38I	GRGCYC	1 cut(s)	557
ErhI	CCWWGG	1 cut(s)	498
FaeI	CATG	1 cut(s)	725
FaiI	YATR	7 cut(s)	279, 364, 366, 523, 718, 723, 751
FaqI	GGGAC	1 cut(s)	750
FatI	CATG	1 cut(s)	721
FokI	GGATG	3 cut(s)	104, 279, 818
FriOI	GRGCYC	1 cut(s)	557
FspBI	CTAG	5 cut(s)	42, 105, 158, 599, 792
GlaI	GCGC	2 cut(s)	220, 603
HaeII	RGCGCY	1 cut(s)	605
HaeIII	GGCC	5 cut(s)	60, 248, 555, 899, 906
HapII	CCGG	2 cut(s)	729, 872
HgaI	GACGC	4 cut(s)	240, 747, 804, 924
HhaI	GCGC	2 cut(s)	221, 604
Hin1I	GRCGYC	4 cut(s)	80, 739, 796, 916
Hin1II	CATG	1 cut(s)	725
Hin6I	GCGC	2 cut(s)	219, 602
HinP1I	GCGC	2 cut(s)	219, 602
HinfI	GANTC	2 cut(s)	447, 701
HpaII	CCGG	2 cut(s)	729, 872
HphI	GGTGA	2 cut(s)	343, 415
Hpy188I	TCNGA	3 cut(s)	256, 437, 452
Hpy188III	TCNNGA	4 cut(s)	127, 194, 705, 735
Hpy99I	CGWCG	2 cut(s)	140, 583
HpyAV	CCTTC	3 cut(s)	49, 253, 257
HpyCH4III	ACNGT	2 cut(s)	579, 893
HpyCH4IV	ACGT	1 cut(s)	80
HpyCH4V	TGCA	7 cut(s)	12, 281, 373, 654, 695, 753, 813
HpyF10VI	GCNNNNNNNGC	3 cut(s)	18, 604, 692
HpyF3I	CTNAG	2 cut(s)	93, 947
HpySE526I	ACGT	1 cut(s)	80
Hsp92I	GRCGYC	4 cut(s)	80, 739, 796, 916
Hsp92II	CATG	1 cut(s)	725
HspAI	GCGC	2 cut(s)	219, 602
Kzo9I	GATC	2 cut(s)	129, 941
LmnI	GCTCC	1 cut(s)	108
Lsp1109I	GCAGC	3 cut(s)	203, 225, 515
LweI	GCATC	1 cut(s)	126
MaeI	CTAG	5 cut(s)	42, 105, 158, 599, 792
MaeII	ACGT	1 cut(s)	80
MalI	GATC	2 cut(s)	131, 943
MboI	GATC	2 cut(s)	129, 941
MflI	RGATCY	1 cut(s)	941
MhlI	GDGCHC	1 cut(s)	557
MluCI	AATT	3 cut(s)	349, 414, 823
MmeI	TCCRAC	2 cut(s)	319, 415
MseI	TTAA	2 cut(s)	227, 822
MspA1I	CMGCKG	1 cut(s)	216
MspI	CCGG	2 cut(s)	729, 872
MvnI	CGCG	3 cut(s)	221, 251, 769
MwoI	GCNNNNNNNGC	3 cut(s)	18, 604, 692
NdeII	GATC	2 cut(s)	129, 941
NheI	GCTAGC	2 cut(s)	41, 598
NlaIII	CATG	1 cut(s)	725
NlaIV	GGNNCC	3 cut(s)	110, 343, 555
NmeAIII	GCCGAG	1 cut(s)	93
NspV	TTCGAA	1 cut(s)	827
PaeR7I	CTCGAG	1 cut(s)	847
PfeI	GAWTC	2 cut(s)	447, 701
Pfl23II	CGTACG	1 cut(s)	674
PinAI	ACCGGT	1 cut(s)	728
PspLI	CGTACG	1 cut(s)	674
PspN4I	GGNNCC	3 cut(s)	110, 343, 555
PspOMI	GGGCCC	1 cut(s)	553
PspPI	GGNCC	5 cut(s)	58, 97, 518, 553, 554
PspXI	VCTCGAGB	1 cut(s)	847
PsuI	RGATCY	1 cut(s)	941
PvuII	CAGCTG	1 cut(s)	216
RsaI	GTAC	2 cut(s)	356, 676
RsaNI	GTAC	2 cut(s)	355, 675
SaqAI	TTAA	2 cut(s)	227, 822
Sau3AI	GATC	2 cut(s)	129, 941
Sau96I	GGNCC	5 cut(s)	58, 97, 518, 553, 554
SduI	GDGCHC	1 cut(s)	557
SfaNI	GCATC	1 cut(s)	126
Sfr274I	CTCGAG	1 cut(s)	847
SfuI	TTCGAA	1 cut(s)	827
SinI	GGWCC	2 cut(s)	97, 518
SlaI	CTCGAG	1 cut(s)	847
SmlI	CTYRAG	1 cut(s)	847
SmoI	CTYRAG	1 cut(s)	847
Sse9I	AATT	3 cut(s)	349, 414, 823
SsiI	CCGC	8 cut(s)	249, 605, 620, 630, 687, 767, 900, 924
SspMI	CTAG	5 cut(s)	42, 105, 158, 599, 792
StyI	CCWWGG	1 cut(s)	498
TaaI	ACNGT	2 cut(s)	579, 893
TaiI	ACGT	1 cut(s)	83
TaqI	TCGA	6 cut(s)	128, 135, 165, 662, 827, 848
TasI	AATT	3 cut(s)	349, 414, 823
TatI	WGTACW	1 cut(s)	354
TauI	GCSGC	6 cut(s)	251, 607, 622, 689, 902, 926
TfiI	GAWTC	2 cut(s)	447, 701
Tru1I	TTAA	2 cut(s)	227, 822
Tru9I	TTAA	2 cut(s)	227, 822
TscAI	CASTG	1 cut(s)	52
TseI	GCWGC	4 cut(s)	9, 213, 216, 503
TspGWI	ACGGA	1 cut(s)	662
TspRI	CASTG	1 cut(s)	52
VpaK11BI	GGWCC	2 cut(s)	97, 518
XhoI	CTCGAG	1 cut(s)	847
XspI	CTAG	5 cut(s)	42, 105, 158, 599, 792
ZraI	GACGTC	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.