Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017268.1

Orthogroup ID

OG0031143

Physical Location & Seq

Genomic Coordinates Reverse (-)

9789 .. 12389

Gene Structure 2601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017268.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

atgacctgttcggctgcaccaatagcgtgcttacgaggtcaagtgccagcactgacacgaagggccaccagacgagagaaatggagcctcagcatccctatctcgatcctcgacgaccacccgaaaatcgatctagccatcgacaacgatgacgagttcaaccccaatctggattcggtcaagggtggcagctgcgcgttgttaaaggataagatggtggaggccgcgtcagagaaggaaggatggagtggatatgcagaccaagtgattggctttttttgggattttggtggtggtggtgtggaggtgagtgctggaacctctaatttgtacttgttatgtgttgtgcaaaatgtttattggtgtatttttagaatggtgaaatggataattgatagaggtttggaggtcggagagagtggaattggagatgggaggggtgttgttgatcaaattgtaacagcaggaactgacatgatgttaccccaaacctcaggtatgtaccactgtgggtactaccaccctttcttgatatgtctagttaaaggcaatataaggggcaaaaccctaccagcccaaaatgtcaagtccaaggcaacacaagggagaggtccatacaaggttcagcaagcccagaatggcttgggcccagtttccatctgcctcccaccgtcgcacgagaactttgggctagcgccgcctcaacctgggccaccacgcaccgcaccgaaccaccacgaaacctgcacagcatcgacccgcatccgtatgacctgtgccgccgttgcaacagaatcaagaaacccactatgccatgccaccggttcgggacgccatcaactatgcacagcacaacgaccgcgttcagagacttccaatgggactagacaccgaaaccaaacctgcaaaaaccttaattcgaacatccaaagagcttcctcgagcaataacatcaatactcgtccagcagaaaaccacaacaactgtgaggccgcaggccagcccaaacgccaagccgccaccgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0015977 GO:0015979 GO:0016020 GO:0016051 GO:0019253 GO:0019685 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0071704 GO:0098542 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Rib_5-P_isom_A

Protein Analysis

342

Amino Acids

37.07

Weight (kDa)

8.74

Isoelectric Point (pI)

42.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031143)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001609.1_g000025 Rmu_sc0017268.1_g000003

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	752, 911
AccII	CGCG	3 cut(s)	197, 227, 862
AciI	CCGC	8 cut(s)	225, 698, 723, 760, 780, 860, 993, 1017
AclWI	GGATC	1 cut(s)	100
AcyI	GRCGYC	1 cut(s)	832
AfaI	GTAC	3 cut(s)	332, 503, 515
AfiI	CCNNNNNNNGG	2 cut(s)	169, 707
AgeI	ACCGGT	1 cut(s)	821
AgsI	TTSAA	1 cut(s)	160
AjnI	CCWGG	1 cut(s)	706
AluBI	AGCT	2 cut(s)	192, 935
AluI	AGCT	2 cut(s)	192, 935
Alw26I	GTCTC	1 cut(s)	863
AlwI	GGATC	1 cut(s)	100
AlwNI	CAGNNNCTG	1 cut(s)	470
Ama87I	CYCGRG	1 cut(s)	940
AoxI	GGCC	6 cut(s)	63, 222, 646, 710, 990, 997
ApaI	GGGCCC	1 cut(s)	650
ApeKI	GCWGC	3 cut(s)	14, 189, 192
AsiGI	ACCGGT	1 cut(s)	821
AspLEI	GCGC	2 cut(s)	197, 697
AspS9I	GGNCC	5 cut(s)	63, 611, 646, 647, 710
AsuHPI	GGTGA	2 cut(s)	319, 391
AsuII	TTCGAA	1 cut(s)	920
AsuNHI	GCTAGC	1 cut(s)	691
AvaI	CYCGRG	1 cut(s)	940
AvaII	GGWCC	1 cut(s)	611
AxyI	CCTNAGG	1 cut(s)	493
BaeGI	GKGCMC	1 cut(s)	650
BanII	GRGCYC	1 cut(s)	650
BauI	CACGAG	1 cut(s)	677
BbvCI	CCTCAGC	1 cut(s)	89
BbvI	GCAGC	2 cut(s)	179, 201
BccI	CCATC	6 cut(s)	146, 208, 237, 425, 665, 843
BceAI	ACGGC	1 cut(s)	767
BciT130I	CCWGG	1 cut(s)	708
BclI	TGATCA	1 cut(s)	448
BcoDI	GTCTC	1 cut(s)	863
BfaI	CTAG	4 cut(s)	134, 539, 692, 885
BfoI	RGCGCY	1 cut(s)	698
BfuAI	ACCTGC	2 cut(s)	752, 911
BisI	GCNGC	8 cut(s)	15, 190, 193, 225, 698, 780, 993, 1017
BlsI	GCNGC	8 cut(s)	16, 191, 194, 226, 699, 781, 994, 1018
Bme1390I	CCNGG	1 cut(s)	708
Bme18I	GGWCC	1 cut(s)	611
BmeT110I	CYCGRG	1 cut(s)	940
BmgT120I	GGNCC	5 cut(s)	63, 611, 646, 647, 710
BmiI	GGNNCC	3 cut(s)	86, 319, 648
BmrFI	CCNGG	1 cut(s)	708
BmrI	ACTGGG	1 cut(s)	644
BmsI	GCATC	3 cut(s)	102, 761, 771
BmtI	GCTAGC	1 cut(s)	695
BmuI	ACTGGG	1 cut(s)	644
Bpu10I	CCTNAGC	1 cut(s)	89
Bpu14I	TTCGAA	1 cut(s)	920
Bsa29I	ATCGAT	1 cut(s)	129
BsaHI	GRCGYC	1 cut(s)	832
BsaJI	CCNNGG	2 cut(s)	591, 707
BsaWI	WCCGGW	1 cut(s)	821
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bsc4I	CCNNNNNNNGG	2 cut(s)	169, 707
Bse118I	RCCGGY	1 cut(s)	821
Bse1I	ACTGG	1 cut(s)	650
Bse21I	CCTNAGG	1 cut(s)	493
BseBI	CCWGG	1 cut(s)	708
BseCI	ATCGAT	1 cut(s)	129
BseDI	CCNNGG	2 cut(s)	591, 707
BseGI	GGATG	4 cut(s)	93, 248, 762, 924
BseLI	CCNNNNNNNGG	2 cut(s)	169, 707
BseMII	CTCAG	2 cut(s)	103, 507
BseNI	ACTGG	1 cut(s)	650
BseSI	GKGCMC	1 cut(s)	650
BseXI	GCAGC	2 cut(s)	179, 201
BsgI	GTGCAG	1 cut(s)	730
Bsh1236I	CGCG	3 cut(s)	197, 227, 862
Bsh1285I	CGRYCG	1 cut(s)	860
BshFI	GGCC	6 cut(s)	65, 224, 648, 712, 992, 999
BshTI	ACCGGT	1 cut(s)	821
BshVI	ATCGAT	1 cut(s)	129
BsiEI	CGRYCG	1 cut(s)	860
BsiHKCI	CYCGRG	1 cut(s)	940
BsiSI	CCGG	1 cut(s)	822
BslFI	GGGAC	2 cut(s)	843, 895
BslI	CCNNNNNNNGG	2 cut(s)	169, 707
BsmAI	GTCTC	1 cut(s)	863
BsmFI	GGGAC	2 cut(s)	843, 895
BsnI	GGCC	6 cut(s)	65, 224, 648, 712, 992, 999
BsoBI	CYCGRG	1 cut(s)	940
Bsp119I	TTCGAA	1 cut(s)	920
Bsp120I	GGGCCC	1 cut(s)	646
Bsp1286I	GDGCHC	1 cut(s)	650
Bsp143I	GATC	3 cut(s)	105, 130, 448
BspACI	CCGC	8 cut(s)	225, 698, 723, 760, 780, 860, 993, 1017
BspANI	GGCC	6 cut(s)	65, 224, 648, 712, 992, 999
BspCNI	CTCAG	2 cut(s)	102, 506
BspDI	ATCGAT	1 cut(s)	129
BspFNI	CGCG	3 cut(s)	197, 227, 862
BspLI	GGNNCC	3 cut(s)	86, 319, 648
BspMI	ACCTGC	2 cut(s)	752, 911
BspOI	GCTAGC	1 cut(s)	695
BspPI	GGATC	1 cut(s)	100
BspT104I	TTCGAA	1 cut(s)	920
BsrFI	RCCGGY	1 cut(s)	821
BsrI	ACTGG	1 cut(s)	650
BssAI	RCCGGY	1 cut(s)	821
BssECI	CCNNGG	2 cut(s)	591, 707
BssMI	GATC	3 cut(s)	105, 130, 448
BssNI	GRCGYC	1 cut(s)	832
BssSI	CACGAG	1 cut(s)	677
BssT1I	CCWWGG	1 cut(s)	591
Bst2BI	CACGAG	1 cut(s)	677
Bst2UI	CCWGG	1 cut(s)	708
Bst4CI	ACNGT	3 cut(s)	509, 672, 986
BstACI	GRCGYC	1 cut(s)	832
BstBI	TTCGAA	1 cut(s)	920
BstC8I	GCNNGC	6 cut(s)	28, 48, 630, 693, 997, 1001
BstDEI	CTNAG	2 cut(s)	89, 493
BstF5I	GGATG	4 cut(s)	93, 248, 762, 924
BstFNI	CGCG	3 cut(s)	197, 227, 862
BstH2I	RGCGCY	1 cut(s)	698
BstHHI	GCGC	2 cut(s)	197, 697
BstKTI	GATC	3 cut(s)	108, 133, 451
BstMAI	GTCTC	1 cut(s)	863
BstMBI	GATC	3 cut(s)	105, 130, 448
BstMCI	CGRYCG	1 cut(s)	860
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 697, 785
BstNI	CCWGG	1 cut(s)	708
BstSCI	CCNGG	1 cut(s)	706
BstSLI	GKGCMC	1 cut(s)	650
BstUI	CGCG	3 cut(s)	197, 227, 862
BstV1I	GCAGC	2 cut(s)	179, 201
BstXI	CCANNNNNNTGG	1 cut(s)	269
Bsu15I	ATCGAT	1 cut(s)	129
Bsu36I	CCTNAGG	1 cut(s)	493
BsuRI	GGCC	6 cut(s)	65, 224, 648, 712, 992, 999
BsuTUI	ATCGAT	1 cut(s)	129
BtsCI	GGATG	4 cut(s)	93, 248, 762, 924
BtsIMutI	CAGTG	2 cut(s)	50, 505
BveI	ACCTGC	2 cut(s)	752, 911
Cac8I	GCNNGC	6 cut(s)	28, 48, 630, 693, 997, 1001
CaiI	CAGNNNCTG	1 cut(s)	470
CfoI	GCGC	2 cut(s)	197, 697
Cfr10I	RCCGGY	1 cut(s)	821
Cfr13I	GGNCC	5 cut(s)	63, 611, 646, 647, 710
ClaI	ATCGAT	1 cut(s)	129
CseI	GACGC	2 cut(s)	216, 840
Csp6I	GTAC	3 cut(s)	331, 502, 514
CspAI	ACCGGT	1 cut(s)	821
CviAII	CATG	2 cut(s)	475, 815
CviQI	GTAC	3 cut(s)	331, 502, 514
DdeI	CTNAG	2 cut(s)	89, 493
DpnI	GATC	3 cut(s)	107, 132, 450
DpnII	GATC	3 cut(s)	105, 130, 448
Eco130I	CCWWGG	1 cut(s)	591
Eco24I	GRGCYC	1 cut(s)	650
Eco47I	GGWCC	1 cut(s)	611
Eco81I	CCTNAGG	1 cut(s)	493
Eco88I	CYCGRG	1 cut(s)	940
EcoRII	CCWGG	1 cut(s)	706
EcoT14I	CCWWGG	1 cut(s)	591
EcoT38I	GRGCYC	1 cut(s)	650
ErhI	CCWWGG	1 cut(s)	591
FaeI	CATG	2 cut(s)	478, 818
FaqI	GGGAC	2 cut(s)	843, 895
FatI	CATG	2 cut(s)	474, 814
FauI	CCCGC	1 cut(s)	767
FbaI	TGATCA	1 cut(s)	448
Fnu4HI	GCNGC	8 cut(s)	15, 190, 193, 225, 698, 780, 993, 1017
FokI	GGATG	4 cut(s)	80, 255, 749, 911
FriOI	GRGCYC	1 cut(s)	650
Fsp4HI	GCNGC	8 cut(s)	15, 190, 193, 225, 698, 780, 993, 1017
FspBI	CTAG	4 cut(s)	134, 539, 692, 885
GlaI	GCGC	2 cut(s)	196, 696
GluI	GCNGC	8 cut(s)	15, 190, 193, 225, 698, 780, 993, 1017
HaeII	RGCGCY	1 cut(s)	698
HaeIII	GGCC	6 cut(s)	65, 224, 648, 712, 992, 999
HapII	CCGG	1 cut(s)	822
HgaI	GACGC	2 cut(s)	216, 840
HhaI	GCGC	2 cut(s)	197, 697
Hin1I	GRCGYC	1 cut(s)	832
Hin1II	CATG	2 cut(s)	478, 818
Hin6I	GCGC	2 cut(s)	195, 695
HinP1I	GCGC	2 cut(s)	195, 695
HinfI	GANTC	2 cut(s)	173, 794
HpaII	CCGG	1 cut(s)	822
HphI	GGTGA	2 cut(s)	319, 391
Hpy188I	TCNGA	3 cut(s)	232, 413, 868
Hpy188III	TCNNGA	5 cut(s)	103, 170, 529, 798, 828
Hpy99I	CGWCG	2 cut(s)	116, 676
HpyAV	CCTTC	3 cut(s)	54, 229, 233
HpyCH4III	ACNGT	3 cut(s)	509, 672, 986
HpyCH4V	TGCA	7 cut(s)	17, 257, 349, 747, 788, 846, 906
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 697, 785
HpyF3I	CTNAG	2 cut(s)	89, 493
Hsp92I	GRCGYC	1 cut(s)	832
Hsp92II	CATG	2 cut(s)	478, 818
HspAI	GCGC	2 cut(s)	195, 695
Ksp22I	TGATCA	1 cut(s)	448
Kzo9I	GATC	3 cut(s)	105, 130, 448
LmnI	GCTCC	1 cut(s)	84
Lsp1109I	GCAGC	2 cut(s)	179, 201
LweI	GCATC	3 cut(s)	102, 761, 771
MaeI	CTAG	4 cut(s)	134, 539, 692, 885
MaeIII	GTNAC	2 cut(s)	457, 480
MalI	GATC	3 cut(s)	107, 132, 450
MboI	GATC	3 cut(s)	105, 130, 448
MhlI	GDGCHC	1 cut(s)	650
MluCI	AATT	5 cut(s)	325, 390, 423, 453, 916
MmeI	TCCRAC	1 cut(s)	391
MseI	TTAA	3 cut(s)	203, 543, 915
MslI	CAYNNNNRTG	1 cut(s)	767
MspA1I	CMGCKG	1 cut(s)	192
MspI	CCGG	1 cut(s)	822
MspR9I	CCNGG	1 cut(s)	708
MvaI	CCWGG	1 cut(s)	708
MvnI	CGCG	3 cut(s)	197, 227, 862
MwoI	GCNNNNNNNGC	3 cut(s)	23, 697, 785
NdeII	GATC	3 cut(s)	105, 130, 448
NheI	GCTAGC	1 cut(s)	691
NlaIII	CATG	2 cut(s)	478, 818
NlaIV	GGNNCC	3 cut(s)	86, 319, 648
NspV	TTCGAA	1 cut(s)	920
PaeR7I	CTCGAG	1 cut(s)	940
PfeI	GAWTC	2 cut(s)	173, 794
PinAI	ACCGGT	1 cut(s)	821
PkrI	GCNGC	8 cut(s)	16, 191, 194, 226, 699, 781, 994, 1018
Psp6I	CCWGG	1 cut(s)	706
PspGI	CCWGG	1 cut(s)	706
PspN4I	GGNNCC	3 cut(s)	86, 319, 648
PspOMI	GGGCCC	1 cut(s)	646
PspPI	GGNCC	5 cut(s)	63, 611, 646, 647, 710
PspXI	VCTCGAGB	1 cut(s)	940
PstNI	CAGNNNCTG	1 cut(s)	470
PvuII	CAGCTG	1 cut(s)	192
RsaI	GTAC	3 cut(s)	332, 503, 515
RsaNI	GTAC	3 cut(s)	331, 502, 514
RseI	CAYNNNNRTG	1 cut(s)	767
SaqAI	TTAA	3 cut(s)	203, 543, 915
SatI	GCNGC	8 cut(s)	15, 190, 193, 225, 698, 780, 993, 1017
Sau3AI	GATC	3 cut(s)	105, 130, 448
Sau96I	GGNCC	5 cut(s)	63, 611, 646, 647, 710
ScrFI	CCNGG	1 cut(s)	708
SduI	GDGCHC	1 cut(s)	650
SfaNI	GCATC	3 cut(s)	102, 761, 771
Sfr274I	CTCGAG	1 cut(s)	940
SfuI	TTCGAA	1 cut(s)	920
SinI	GGWCC	1 cut(s)	611
SlaI	CTCGAG	1 cut(s)	940
SmiMI	CAYNNNNRTG	1 cut(s)	767
SmlI	CTYRAG	1 cut(s)	940
SmoI	CTYRAG	1 cut(s)	940
Sse9I	AATT	5 cut(s)	325, 390, 423, 453, 916
SsiI	CCGC	8 cut(s)	225, 698, 723, 760, 780, 860, 993, 1017
SspMI	CTAG	4 cut(s)	134, 539, 692, 885
StyD4I	CCNGG	1 cut(s)	706
StyI	CCWWGG	1 cut(s)	591
TaaI	ACNGT	3 cut(s)	509, 672, 986
TaqI	TCGA	7 cut(s)	104, 111, 129, 141, 755, 920, 941
TaqII	GACCGA	1 cut(s)	166
TasI	AATT	5 cut(s)	325, 390, 423, 453, 916
TatI	WGTACW	1 cut(s)	330
TauI	GCSGC	5 cut(s)	227, 700, 782, 995, 1019
TfiI	GAWTC	2 cut(s)	173, 794
Tru1I	TTAA	3 cut(s)	203, 543, 915
Tru9I	TTAA	3 cut(s)	203, 543, 915
TscAI	CASTG	2 cut(s)	57, 512
TseI	GCWGC	3 cut(s)	14, 189, 192
TspGWI	ACGGA	1 cut(s)	755
TspRI	CASTG	2 cut(s)	57, 512
VpaK11BI	GGWCC	1 cut(s)	611
XhoI	CTCGAG	1 cut(s)	940
XspI	CTAG	4 cut(s)	134, 539, 692, 885

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.