Rmu_sc0001616.1_g000051

Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001616.1
OG0031144
Physical Location & Seq
Forward (+)
254331 .. 256094
1764 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 717 bp
atggatcccaaaattaatctcggggagagagaagacgacgttgacgtatccaaggttaaaattgggaatggagcagaagcaaacctggagaacggtgacgacgacgtcttttttactccaatggctccgccagaagaggatcctccaacctcatgcaaagctcccgaggcaccgcctgaccttcatgaccctcctcctccttcccccaactacaacgtttcggacaacaaccagaaattcggcgtggacatgccggcgatagggaagctcatccggaagagaagcaatgatctctcctcggcgttcctgaagaagctatcgtcgctcaaggacaacaatttcgccgacgagtttctgaagtcgaatgtaaccgagttccatctctccggcctcaaagtgagggtgaagcacaagagcgagacggagcagcaaatgcagactttcaaaggtcggatcatcttcttctccaggtccaatttccgggactgcacggcggtcccgactggagcttcaggcgtgatgccggagttcgacgccgcatcggggggagagagagagaattgtgtcggggacgagcgcgtctttgggaaatcatcgtcggatgagcaactaagttctgtgactccaattgtaagggtcagtggtgtagtcgaggccagaaacgtagttaaactcaatttcagagaaggcacgccaaacacaactgtgcctgtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DEP DUF547 Glutaredoxin

Protein Analysis

238

Amino Acids

26.01

Weight (kDa)

5.05

Isoelectric Point (pI)

36.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031144)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001616.1_g000051 Rmu_sc0001851.1_g000017

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 104, 578
AatII GACGTC 1 cut(s) 108
AccB1I GGYRCC 1 cut(s) 169
AccII CGCG 1 cut(s) 579
AccIII TCCGGA 1 cut(s) 273
AciI CCGC 4 cut(s) 128, 173, 494, 537
AclI AACGTT 1 cut(s) 216
AclWI GGATC 4 cut(s) 12, 134, 147, 461
AcsI RAATTY 1 cut(s) 236
AcuI CTGAAG 3 cut(s) 329, 377, 495
AcyI GRCGYC 2 cut(s) 105, 534
AfiI CCNNNNNNNGG 3 cut(s) 260, 480, 543
AgsI TTSAA 1 cut(s) 445
AjnI CCWGG 2 cut(s) 84, 467
AleI CACNNNNGTG 1 cut(s) 704
AluBI AGCT 4 cut(s) 161, 268, 316, 509
AluI AGCT 4 cut(s) 161, 268, 316, 509
Alw26I GTCTC 1 cut(s) 413
AlwI GGATC 4 cut(s) 12, 134, 147, 461
Ama87I CYCGRG 2 cut(s) 20, 164
Aor13HI TCCGGA 1 cut(s) 273
AoxI GGCC 2 cut(s) 388, 654
ApeKI GCWGC 1 cut(s) 427
ApoI RAATTY 1 cut(s) 236
ArsI GACNNNNNNTTYG 2 cut(s) 323, 355
AseI ATTAAT 1 cut(s) 15
AspLEI GCGC 1 cut(s) 579
AspS9I GGNCC 2 cut(s) 471, 496
AsuC2I CCSGG 1 cut(s) 482
AsuHPI GGTGA 2 cut(s) 107, 415
AvaI CYCGRG 2 cut(s) 20, 164
AvaII GGWCC 2 cut(s) 471, 496
BamHI GGATCC 2 cut(s) 4, 139
BanI GGYRCC 1 cut(s) 169
BbsI GAAGAC 1 cut(s) 39
BbvI GCAGC 1 cut(s) 439
BccI CCATC 1 cut(s) 387
BceAI ACGGC 1 cut(s) 507
BciT130I CCWGG 2 cut(s) 86, 469
BciVI GTATCC 1 cut(s) 58
BcnI CCSGG 1 cut(s) 482
BcoDI GTCTC 1 cut(s) 413
BfuI GTATCC 1 cut(s) 58
BisI GCNGC 2 cut(s) 428, 537
BlsI GCNGC 2 cut(s) 429, 538
Bme1390I CCNGG 3 cut(s) 86, 469, 482
Bme18I GGWCC 2 cut(s) 471, 496
BmeT110I CYCGRG 2 cut(s) 20, 164
BmgT120I GGNCC 2 cut(s) 471, 496
BmiI GGNNCC 5 cut(s) 6, 126, 141, 171, 498
BmrFI CCNGG 3 cut(s) 86, 469, 482
BmsI GCATC 2 cut(s) 510, 548
BpiI GAAGAC 1 cut(s) 39
BpmI CTGGAG 3 cut(s) 107, 451, 525
BpuEI CTTGAG 1 cut(s) 311
BpuMI CCSGG 1 cut(s) 482
BsaHI GRCGYC 2 cut(s) 105, 534
BsaJI CCNNGG 3 cut(s) 51, 165, 297
BsaWI WCCGGW 1 cut(s) 273
Bsc4I CCNNNNNNNGG 3 cut(s) 260, 480, 543
Bse118I RCCGGY 1 cut(s) 253
Bse1I ACTGG 1 cut(s) 508
Bse3DI GCAATG 1 cut(s) 292
BseAI TCCGGA 1 cut(s) 273
BseBI CCWGG 2 cut(s) 86, 469
BseDI CCNNGG 3 cut(s) 51, 165, 297
BseGI GGATG 2 cut(s) 270, 607
BseLI CCNNNNNNNGG 3 cut(s) 260, 480, 543
BseMI GCAATG 1 cut(s) 292
BseNI ACTGG 1 cut(s) 508
BseRI GAGGAG 3 cut(s) 183, 186, 286
BseXI GCAGC 1 cut(s) 439
BsgI GTGCAG 1 cut(s) 472
Bsh1236I CGCG 1 cut(s) 579
BshFI GGCC 2 cut(s) 390, 656
BshNI GGYRCC 1 cut(s) 169
BsiHKCI CYCGRG 2 cut(s) 20, 164
BsiSI CCGG 5 cut(s) 254, 274, 387, 481, 524
BslFI GGGAC 3 cut(s) 482, 497, 584
BslI CCNNNNNNNGG 3 cut(s) 260, 480, 543
BsmAI GTCTC 1 cut(s) 413
BsmBI CGTCTC 1 cut(s) 413
BsmFI GGGAC 3 cut(s) 482, 497, 584
BsnI GGCC 2 cut(s) 390, 656
BsoBI CYCGRG 2 cut(s) 20, 164
Bsp13I TCCGGA 1 cut(s) 273
Bsp143I GATC 4 cut(s) 4, 139, 289, 453
BspACI CCGC 4 cut(s) 128, 173, 494, 537
BspANI GGCC 2 cut(s) 390, 656
BspEI TCCGGA 1 cut(s) 273
BspFNI CGCG 1 cut(s) 579
BspHI TCATGA 1 cut(s) 184
BspLI GGNNCC 5 cut(s) 6, 126, 141, 171, 498
BspPI GGATC 4 cut(s) 12, 134, 147, 461
BspT107I GGYRCC 1 cut(s) 169
BsrDI GCAATG 1 cut(s) 292
BsrFI RCCGGY 1 cut(s) 253
BsrI ACTGG 1 cut(s) 508
BssAI RCCGGY 1 cut(s) 253
BssECI CCNNGG 3 cut(s) 51, 165, 297
BssMI GATC 4 cut(s) 4, 139, 289, 453
BssNI GRCGYC 2 cut(s) 105, 534
BssT1I CCWWGG 1 cut(s) 51
Bst2UI CCWGG 2 cut(s) 86, 469
Bst4CI ACNGT 2 cut(s) 95, 706
Bst6I CTCTTC 2 cut(s) 129, 272
BstACI GRCGYC 2 cut(s) 105, 534
BstAPI GCANNNNNTGC 1 cut(s) 433
BstC8I GCNNGC 2 cut(s) 255, 692
BstDEI CTNAG 1 cut(s) 611
BstF5I GGATG 2 cut(s) 270, 607
BstFNI CGCG 1 cut(s) 579
BstHHI GCGC 1 cut(s) 579
BstKTI GATC 4 cut(s) 7, 142, 292, 456
BstMAI GTCTC 1 cut(s) 413
BstMBI GATC 4 cut(s) 4, 139, 289, 453
BstMWI GCNNNNNNNGC 3 cut(s) 167, 322, 433
BstNI CCWGG 2 cut(s) 86, 469
BstNSI RCATGY 1 cut(s) 253
BstSCI CCNGG 3 cut(s) 84, 467, 480
BstUI CGCG 1 cut(s) 579
BstV1I GCAGC 1 cut(s) 439
BstV2I GAAGAC 1 cut(s) 39
BstX2I RGATCY 2 cut(s) 4, 139
BstYI RGATCY 2 cut(s) 4, 139
BsuI GTATCC 1 cut(s) 58
BsuRI GGCC 2 cut(s) 390, 656
BtsCI GGATG 2 cut(s) 270, 607
BtsIMutI CAGTG 1 cut(s) 646
Cac8I GCNNGC 2 cut(s) 255, 692
CciI TCATGA 1 cut(s) 184
CfoI GCGC 1 cut(s) 579
Cfr10I RCCGGY 1 cut(s) 253
Cfr13I GGNCC 2 cut(s) 471, 496
CseI GACGC 2 cut(s) 542, 568
CviAII CATG 3 cut(s) 153, 185, 250
CviJI RGCY 7 cut(s) 125, 161, 268, 316, 390, 509, 656
CviKI_1 RGCY 7 cut(s) 125, 161, 268, 316, 390, 509, 656
DdeI CTNAG 1 cut(s) 611
DpnI GATC 4 cut(s) 6, 141, 291, 455
DpnII GATC 4 cut(s) 4, 139, 289, 453
DrdI GACNNNNNNGTC 2 cut(s) 104, 578
DseDI GACNNNNNNGTC 2 cut(s) 104, 578
Eam1104I CTCTTC 2 cut(s) 129, 272
EarI CTCTTC 2 cut(s) 129, 272
EciI GGCGGA 1 cut(s) 117
Eco130I CCWWGG 1 cut(s) 51
Eco47I GGWCC 2 cut(s) 471, 496
Eco57I CTGAAG 3 cut(s) 329, 377, 495
Eco88I CYCGRG 2 cut(s) 20, 164
EcoRII CCWGG 2 cut(s) 84, 467
EcoT14I CCWWGG 1 cut(s) 51
ErhI CCWWGG 1 cut(s) 51
Esp3I CGTCTC 1 cut(s) 413
FaeI CATG 3 cut(s) 156, 188, 253
FaiI YATR 3 cut(s) 154, 186, 251
FaqI GGGAC 3 cut(s) 482, 497, 584
FatI CATG 3 cut(s) 152, 184, 249
Fnu4HI GCNGC 2 cut(s) 428, 537
FokI GGATG 2 cut(s) 257, 614
Fsp4HI GCNGC 2 cut(s) 428, 537
GlaI GCGC 1 cut(s) 578
GluI GCNGC 2 cut(s) 428, 537
GsuI CTGGAG 3 cut(s) 107, 451, 525
HaeIII GGCC 2 cut(s) 390, 656
HapII CCGG 5 cut(s) 254, 274, 387, 481, 524
HgaI GACGC 2 cut(s) 542, 568
HhaI GCGC 1 cut(s) 579
Hin1I GRCGYC 2 cut(s) 105, 534
Hin1II CATG 3 cut(s) 156, 188, 253
Hin6I GCGC 1 cut(s) 577
HinP1I GCGC 1 cut(s) 577
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HinfI GANTC 1 cut(s) 622
HpaII CCGG 5 cut(s) 254, 274, 387, 481, 524
HphI GGTGA 2 cut(s) 107, 415
Hpy166II GTNNAC 2 cut(s) 43, 247
Hpy188I TCNGA 5 cut(s) 223, 357, 453, 601, 683
Hpy188III TCNNGA 5 cut(s) 164, 185, 274, 307, 499
Hpy8I GTNNAC 2 cut(s) 43, 247
Hpy99I CGWCG 7 cut(s) 41, 104, 107, 325, 350, 536, 601
HpyAV CCTTC 3 cut(s) 191, 210, 680
HpyCH4III ACNGT 2 cut(s) 95, 706
HpyCH4IV ACGT 5 cut(s) 39, 45, 105, 216, 663
HpyCH4V TGCA 3 cut(s) 156, 436, 489
HpyF10VI GCNNNNNNNGC 3 cut(s) 167, 322, 433
HpyF3I CTNAG 1 cut(s) 611
HpySE526I ACGT 5 cut(s) 39, 45, 105, 216, 663
Hsp92I GRCGYC 2 cut(s) 105, 534
Hsp92II CATG 3 cut(s) 156, 188, 253
HspAI GCGC 1 cut(s) 577
Kpn2I TCCGGA 1 cut(s) 273
KroI GCCGGC 1 cut(s) 253
KroNI GCCGGC 1 cut(s) 255
Kzo9I GATC 4 cut(s) 4, 139, 289, 453
LmnI GCTCC 5 cut(s) 71, 130, 166, 424, 506
Lsp1109I GCAGC 1 cut(s) 439
LweI GCATC 2 cut(s) 510, 548
MaeII ACGT 5 cut(s) 39, 45, 105, 216, 663
MaeIII GTNAC 3 cut(s) 95, 367, 619
MalI GATC 4 cut(s) 6, 141, 291, 455
MboI GATC 4 cut(s) 4, 139, 289, 453
MboII GAAGA 6 cut(s) 44, 146, 289, 322, 451, 454
MfeI CAATTG 1 cut(s) 627
MflI RGATCY 2 cut(s) 4, 139
MluCI AATT 8 cut(s) 12, 60, 236, 337, 475, 559, 627, 676
MlyI GAGTC 1 cut(s) 616
MmeI TCCRAC 3 cut(s) 170, 431, 579
MroI TCCGGA 1 cut(s) 273
MroNI GCCGGC 1 cut(s) 253
MseI TTAA 3 cut(s) 15, 57, 669
MslI CAYNNNNRTG 1 cut(s) 704
MspI CCGG 5 cut(s) 254, 274, 387, 481, 524
MspR9I CCNGG 3 cut(s) 86, 469, 482
MunI CAATTG 1 cut(s) 627
MvaI CCWGG 2 cut(s) 86, 469
MvnI CGCG 1 cut(s) 579
MwoI GCNNNNNNNGC 3 cut(s) 167, 322, 433
NaeI GCCGGC 1 cut(s) 255
NciI CCSGG 1 cut(s) 482
NdeII GATC 4 cut(s) 4, 139, 289, 453
NgoMIV GCCGGC 1 cut(s) 253
NlaIII CATG 3 cut(s) 156, 188, 253
NlaIV GGNNCC 5 cut(s) 6, 126, 141, 171, 498
NmeAIII GCCGAG 1 cut(s) 278
NmuCI GTSAC 2 cut(s) 95, 619
NspI RCATGY 1 cut(s) 253
OliI CACNNNNGTG 1 cut(s) 704
PagI TCATGA 1 cut(s) 184
PcsI WCGNNNNNNNCGW 3 cut(s) 42, 99, 497
PdiI GCCGGC 1 cut(s) 255
PflFI GACNNNGTC 1 cut(s) 104
PfoI TCCNGGA 1 cut(s) 480
PkrI GCNGC 2 cut(s) 429, 538
PleI GAGTC 1 cut(s) 616
PpsI GAGTC 1 cut(s) 616
PshBI ATTAAT 1 cut(s) 15
Psp1406I AACGTT 1 cut(s) 216
Psp6I CCWGG 2 cut(s) 84, 467
PspGI CCWGG 2 cut(s) 84, 467
PspN4I GGNNCC 5 cut(s) 6, 126, 141, 171, 498
PspPI GGNCC 2 cut(s) 471, 496
PsuI RGATCY 2 cut(s) 4, 139
PsyI GACNNNGTC 1 cut(s) 104
RseI CAYNNNNRTG 1 cut(s) 704
SaqAI TTAA 3 cut(s) 15, 57, 669
SatI GCNGC 2 cut(s) 428, 537
Sau3AI GATC 4 cut(s) 4, 139, 289, 453
Sau96I GGNCC 2 cut(s) 471, 496
SchI GAGTC 1 cut(s) 616
ScrFI CCNGG 3 cut(s) 86, 469, 482
SfaNI GCATC 2 cut(s) 510, 548
SinI GGWCC 2 cut(s) 471, 496
SmiMI CAYNNNNRTG 1 cut(s) 704
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
Sse9I AATT 8 cut(s) 12, 60, 236, 337, 475, 559, 627, 676
SsiI CCGC 4 cut(s) 128, 173, 494, 537
StyD4I CCNGG 3 cut(s) 84, 467, 480
StyI CCWWGG 1 cut(s) 51
TaaI ACNGT 2 cut(s) 95, 706
TaiI ACGT 5 cut(s) 42, 48, 108, 219, 666
TaqI TCGA 3 cut(s) 362, 531, 651
TasI AATT 8 cut(s) 12, 60, 236, 337, 475, 559, 627, 676
TauI GCSGC 1 cut(s) 539
Tru1I TTAA 3 cut(s) 15, 57, 669
Tru9I TTAA 3 cut(s) 15, 57, 669
TscAI CASTG 1 cut(s) 646
TseFI GTSAC 2 cut(s) 95, 619
TseI GCWGC 1 cut(s) 427
Tsp45I GTSAC 2 cut(s) 95, 619
TspDTI ATGAA 1 cut(s) 173
TspGWI ACGGA 1 cut(s) 437
TspRI CASTG 1 cut(s) 646
Tth111I GACNNNGTC 1 cut(s) 104
VpaK11BI GGWCC 2 cut(s) 471, 496
VspI ATTAAT 1 cut(s) 15
XapI RAATTY 1 cut(s) 236
XceI RCATGY 1 cut(s) 253
ZraI GACGTC 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.