Rmu_sc0001851.1_g000017

Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001851.1
OG0031144
Physical Location & Seq
Reverse (-)
82463 .. 84196
1734 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001851.1_g000017.1.cds

Sequence Viewer

Length: 804 bp
atgccggcgataggtaagctcatccggaagagaagcaacgatctctcctcggcgttcctgaagaagctatcgtcgctcaaggacaacaatttcgccgacgagtttctgaagccgaatgtaaccgagttccatctctccggcctcaaagtgacggtgaagcacaagagcgagacggagcagcaaacgcagactctcaaaggtcggatcatcttcttctccaggtccaattgccgggactgcacggcggtcccgaccggagcttcaggcgtgatgctggagttcgacgcctcatcggggggagagagagagagagagagaattgtgccggggacgagagcgatatcgaaacagtttgcttggaattttacatttcacaaccccattcggcagcacgtctttgggacatcatcgtcggatgagcaactaagttctgtgactccaattgtaaggagcagaggcagtgaaagtgcgcaacagtggagcagcggaggtggacaggtaattggcgaagacgatcttggtcgccaaactatgttgattttttttagttatgggttatggctaatgaaggaaaatgcttcgaaggtacgtaaggatttacgctttcctttagacttatttgttcacaacaagtgtgcaaaggggtttgatcatataagccggtatgatacaatgaagcctagcaatcctgctattgttgatcggcgttttgcacttacgaagatcaacccaacactcaatcaaaggttttcaagaggcttaaggttgctagagacactatatctgcaattttatggtttctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DEP DUF547 Glutaredoxin

Protein Analysis

267

Amino Acids

30.25

Weight (kDa)

9.86

Isoelectric Point (pI)

42.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031144)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001616.1_g000051 Rmu_sc0001851.1_g000017

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 409
Acc16I TGCGCA 1 cut(s) 471
AccIII TCCGGA 1 cut(s) 24
AciI CCGC 2 cut(s) 245, 486
AclWI GGATC 1 cut(s) 212
AcsI RAATTY 1 cut(s) 361
AcuI CTGAAG 3 cut(s) 80, 128, 246
AcyI GRCGYC 1 cut(s) 285
AfaI GTAC 1 cut(s) 588
AfiI CCNNNNNNNGG 3 cut(s) 11, 231, 294
AflII CTTAAG 1 cut(s) 760
AgsI TTSAA 1 cut(s) 753
AjiI CACGTC 1 cut(s) 394
AjnI CCWGG 1 cut(s) 218
AjuI GAANNNNNNNTTGG 2 cut(s) 501, 533
AluBI AGCT 3 cut(s) 19, 67, 260
AluI AGCT 3 cut(s) 19, 67, 260
Alw26I GTCTC 2 cut(s) 164, 767
AlwI GGATC 1 cut(s) 212
Aor13HI TCCGGA 1 cut(s) 24
AoxI GGCC 1 cut(s) 139
ApeKI GCWGC 3 cut(s) 178, 388, 483
ApoI RAATTY 1 cut(s) 361
ArsI GACNNNNNNTTYG 2 cut(s) 74, 106
AspLEI GCGC 1 cut(s) 472
AspS9I GGNCC 2 cut(s) 222, 247
AsuC2I CCSGG 2 cut(s) 233, 327
AsuHPI GGTGA 1 cut(s) 166
AsuII TTCGAA 1 cut(s) 581
AvaII GGWCC 2 cut(s) 222, 247
BbsI GAAGAC 1 cut(s) 516
BbvI GCAGC 3 cut(s) 190, 400, 495
BccI CCATC 1 cut(s) 138
BceAI ACGGC 1 cut(s) 258
BciT130I CCWGG 1 cut(s) 220
BclI TGATCA 1 cut(s) 649
BcnI CCSGG 2 cut(s) 233, 327
BcoDI GTCTC 2 cut(s) 164, 767
BfaI CTAG 3 cut(s) 681, 770, 802
BfrI CTTAAG 1 cut(s) 760
BisI GCNGC 3 cut(s) 179, 389, 484
BlsI GCNGC 3 cut(s) 180, 390, 485
Bme1390I CCNGG 3 cut(s) 220, 233, 327
Bme18I GGWCC 2 cut(s) 222, 247
BmgBI CACGTC 1 cut(s) 394
BmgT120I GGNCC 2 cut(s) 222, 247
BmiI GGNNCC 1 cut(s) 249
BmrFI CCNGG 3 cut(s) 220, 233, 327
BmsI GCATC 1 cut(s) 261
BpiI GAAGAC 1 cut(s) 516
BpmI CTGGAG 2 cut(s) 202, 296
Bpu14I TTCGAA 1 cut(s) 581
BpuEI CTTGAG 1 cut(s) 62
BpuMI CCSGG 2 cut(s) 233, 327
BsaAI YACGTR 1 cut(s) 590
BsaHI GRCGYC 1 cut(s) 285
BsaJI CCNNGG 2 cut(s) 48, 326
BsaWI WCCGGW 2 cut(s) 24, 254
BsaXI ACNNNNNCTCC 2 cut(s) 29, 59
Bsc4I CCNNNNNNNGG 3 cut(s) 11, 231, 294
Bse118I RCCGGY 2 cut(s) 4, 660
BseAI TCCGGA 1 cut(s) 24
BseBI CCWGG 1 cut(s) 220
BseDI CCNNGG 2 cut(s) 48, 326
BseGI GGATG 2 cut(s) 21, 421
BseLI CCNNNNNNNGG 3 cut(s) 11, 231, 294
BseRI GAGGAG 1 cut(s) 37
BseXI GCAGC 3 cut(s) 190, 400, 495
BsgI GTGCAG 1 cut(s) 223
Bsh1285I CGRYCG 1 cut(s) 255
BshFI GGCC 1 cut(s) 141
BsiEI CGRYCG 1 cut(s) 255
BsiSI CCGG 7 cut(s) 5, 25, 138, 232, 255, 326, 661
BslFI GGGAC 4 cut(s) 233, 248, 343, 415
BslI CCNNNNNNNGG 3 cut(s) 11, 231, 294
BsmAI GTCTC 2 cut(s) 164, 767
BsmBI CGTCTC 1 cut(s) 164
BsmFI GGGAC 4 cut(s) 233, 248, 343, 415
BsnI GGCC 1 cut(s) 141
Bsp119I TTCGAA 1 cut(s) 581
Bsp13I TCCGGA 1 cut(s) 24
Bsp143I GATC 6 cut(s) 40, 204, 514, 649, 700, 723
BspACI CCGC 2 cut(s) 245, 486
BspANI GGCC 1 cut(s) 141
BspEI TCCGGA 1 cut(s) 24
BspLI GGNNCC 1 cut(s) 249
BspPI GGATC 1 cut(s) 212
BspT104I TTCGAA 1 cut(s) 581
BspTI CTTAAG 1 cut(s) 760
BsrFI RCCGGY 2 cut(s) 4, 660
BssAI RCCGGY 2 cut(s) 4, 660
BssECI CCNNGG 2 cut(s) 48, 326
BssMI GATC 6 cut(s) 40, 204, 514, 649, 700, 723
BssNI GRCGYC 1 cut(s) 285
Bst2UI CCWGG 1 cut(s) 220
Bst4CI ACNGT 3 cut(s) 154, 351, 477
Bst6I CTCTTC 1 cut(s) 23
BstACI GRCGYC 1 cut(s) 285
BstAFI CTTAAG 1 cut(s) 760
BstBAI YACGTR 1 cut(s) 590
BstBI TTCGAA 1 cut(s) 581
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 425
BstF5I GGATG 2 cut(s) 21, 421
BstHHI GCGC 1 cut(s) 472
BstKTI GATC 6 cut(s) 43, 207, 517, 652, 703, 726
BstMAI GTCTC 2 cut(s) 164, 767
BstMBI GATC 6 cut(s) 40, 204, 514, 649, 700, 723
BstMCI CGRYCG 1 cut(s) 255
BstMWI GCNNNNNNNGC 3 cut(s) 73, 184, 237
BstNI CCWGG 1 cut(s) 220
BstSCI CCNGG 3 cut(s) 218, 231, 325
BstSNI TACGTA 1 cut(s) 590
BstV1I GCAGC 3 cut(s) 190, 400, 495
BstV2I GAAGAC 1 cut(s) 516
BsuRI GGCC 1 cut(s) 141
BtrI CACGTC 1 cut(s) 394
BtsCI GGATG 2 cut(s) 21, 421
BtsI GCAGTG 1 cut(s) 466
BtsIMutI CAGTG 2 cut(s) 466, 482
Cac8I GCNNGC 1 cut(s) 6
CfoI GCGC 1 cut(s) 472
Cfr10I RCCGGY 2 cut(s) 4, 660
Cfr13I GGNCC 2 cut(s) 222, 247
CseI GACGC 1 cut(s) 293
Csp6I GTAC 1 cut(s) 587
CviJI RGCY 9 cut(s) 19, 67, 112, 141, 260, 562, 660, 679, 759
CviKI_1 RGCY 9 cut(s) 19, 67, 112, 141, 260, 562, 660, 679, 759
CviQI GTAC 1 cut(s) 587
DdeI CTNAG 1 cut(s) 425
DpnI GATC 6 cut(s) 42, 206, 516, 651, 702, 725
DpnII GATC 6 cut(s) 40, 204, 514, 649, 700, 723
DrdI GACNNNNNNGTC 1 cut(s) 409
DseDI GACNNNNNNGTC 1 cut(s) 409
Eam1104I CTCTTC 1 cut(s) 23
EarI CTCTTC 1 cut(s) 23
Eco105I TACGTA 1 cut(s) 590
Eco32I GATATC 1 cut(s) 342
Eco47I GGWCC 2 cut(s) 222, 247
Eco57I CTGAAG 3 cut(s) 80, 128, 246
EcoRII CCWGG 1 cut(s) 218
EcoRV GATATC 1 cut(s) 342
Esp3I CGTCTC 1 cut(s) 164
FaiI YATR 8 cut(s) 533, 552, 559, 654, 656, 666, 781, 795
FalI AAGNNNNNCTT 2 cut(s) 501, 533
FaqI GGGAC 4 cut(s) 233, 248, 343, 415
FbaI TGATCA 1 cut(s) 649
Fnu4HI GCNGC 3 cut(s) 179, 389, 484
FokI GGATG 2 cut(s) 8, 428
Fsp4HI GCNGC 3 cut(s) 179, 389, 484
FspBI CTAG 3 cut(s) 681, 770, 802
FspI TGCGCA 1 cut(s) 471
GlaI GCGC 1 cut(s) 471
GluI GCNGC 3 cut(s) 179, 389, 484
GsuI CTGGAG 2 cut(s) 202, 296
HaeIII GGCC 1 cut(s) 141
HapII CCGG 7 cut(s) 5, 25, 138, 232, 255, 326, 661
HgaI GACGC 1 cut(s) 293
HhaI GCGC 1 cut(s) 472
Hin1I GRCGYC 1 cut(s) 285
Hin6I GCGC 1 cut(s) 470
HinP1I GCGC 1 cut(s) 470
HinfI GANTC 2 cut(s) 190, 436
HpaII CCGG 7 cut(s) 5, 25, 138, 232, 255, 326, 661
HphI GGTGA 1 cut(s) 166
Hpy166II GTNNAC 2 cut(s) 494, 625
Hpy188I TCNGA 3 cut(s) 108, 204, 415
Hpy188III TCNNGA 4 cut(s) 25, 58, 250, 753
Hpy8I GTNNAC 2 cut(s) 494, 625
Hpy99I CGWCG 4 cut(s) 76, 101, 287, 415
HpyAV CCTTC 2 cut(s) 562, 577
HpyCH4III ACNGT 3 cut(s) 154, 351, 477
HpyCH4IV ACGT 2 cut(s) 393, 589
HpyCH4V TGCA 4 cut(s) 240, 638, 713, 787
HpyF10VI GCNNNNNNNGC 3 cut(s) 73, 184, 237
HpyF3I CTNAG 1 cut(s) 425
HpySE526I ACGT 2 cut(s) 393, 589
Hsp92I GRCGYC 1 cut(s) 285
HspAI GCGC 1 cut(s) 470
Kpn2I TCCGGA 1 cut(s) 24
KroI GCCGGC 1 cut(s) 4
KroNI GCCGGC 1 cut(s) 6
Ksp22I TGATCA 1 cut(s) 649
Kzo9I GATC 6 cut(s) 40, 204, 514, 649, 700, 723
LmnI GCTCC 4 cut(s) 175, 257, 450, 480
Lsp1109I GCAGC 3 cut(s) 190, 400, 495
LweI GCATC 1 cut(s) 261
MaeI CTAG 3 cut(s) 681, 770, 802
MaeII ACGT 2 cut(s) 393, 589
MaeIII GTNAC 3 cut(s) 118, 148, 433
MalI GATC 6 cut(s) 42, 206, 516, 651, 702, 725
MboI GATC 6 cut(s) 40, 204, 514, 649, 700, 723
MboII GAAGA 6 cut(s) 40, 73, 202, 205, 521, 733
MfeI CAATTG 2 cut(s) 226, 441
MluCI AATT 7 cut(s) 88, 226, 318, 361, 441, 501, 788
MlyI GAGTC 2 cut(s) 184, 430
MmeI TCCRAC 2 cut(s) 182, 393
MnlI CCTC 6 cut(s) 58, 152, 298, 449, 482, 749
MroI TCCGGA 1 cut(s) 24
MroNI GCCGGC 1 cut(s) 4
MseI TTAA 1 cut(s) 761
MspA1I CMGCKG 1 cut(s) 486
MspCI CTTAAG 1 cut(s) 760
MspI CCGG 7 cut(s) 5, 25, 138, 232, 255, 326, 661
MspR9I CCNGG 3 cut(s) 220, 233, 327
MunI CAATTG 2 cut(s) 226, 441
MvaI CCWGG 1 cut(s) 220
MwoI GCNNNNNNNGC 3 cut(s) 73, 184, 237
NaeI GCCGGC 1 cut(s) 6
NciI CCSGG 2 cut(s) 233, 327
NdeII GATC 6 cut(s) 40, 204, 514, 649, 700, 723
NgoMIV GCCGGC 1 cut(s) 4
NlaIV GGNNCC 1 cut(s) 249
NmeAIII GCCGAG 1 cut(s) 29
NmuCI GTSAC 2 cut(s) 148, 433
NsbI TGCGCA 1 cut(s) 471
NspV TTCGAA 1 cut(s) 581
PcsI WCGNNNNNNNCGW 1 cut(s) 248
PdiI GCCGGC 1 cut(s) 6
PkrI GCNGC 3 cut(s) 180, 390, 485
PleI GAGTC 2 cut(s) 184, 430
PpsI GAGTC 2 cut(s) 184, 430
Ppu21I YACGTR 1 cut(s) 590
Psp6I CCWGG 1 cut(s) 218
PspGI CCWGG 1 cut(s) 218
PspN4I GGNNCC 1 cut(s) 249
PspPI GGNCC 2 cut(s) 222, 247
RsaI GTAC 1 cut(s) 588
RsaNI GTAC 1 cut(s) 587
SaqAI TTAA 1 cut(s) 761
SatI GCNGC 3 cut(s) 179, 389, 484
Sau3AI GATC 6 cut(s) 40, 204, 514, 649, 700, 723
Sau96I GGNCC 2 cut(s) 222, 247
SchI GAGTC 2 cut(s) 184, 430
ScrFI CCNGG 3 cut(s) 220, 233, 327
SfaNI GCATC 1 cut(s) 261
SfuI TTCGAA 1 cut(s) 581
SinI GGWCC 2 cut(s) 222, 247
SmlI CTYRAG 2 cut(s) 77, 760
SmoI CTYRAG 2 cut(s) 77, 760
SnaBI TACGTA 1 cut(s) 590
Sse9I AATT 7 cut(s) 88, 226, 318, 361, 441, 501, 788
SsiI CCGC 2 cut(s) 245, 486
SspMI CTAG 3 cut(s) 681, 770, 802
StyD4I CCNGG 3 cut(s) 218, 231, 325
TaaI ACNGT 3 cut(s) 154, 351, 477
TaiI ACGT 2 cut(s) 396, 592
TaqI TCGA 3 cut(s) 282, 344, 581
TasI AATT 7 cut(s) 88, 226, 318, 361, 441, 501, 788
Tru1I TTAA 1 cut(s) 761
Tru9I TTAA 1 cut(s) 761
TscAI CASTG 2 cut(s) 466, 482
TseFI GTSAC 2 cut(s) 148, 433
TseI GCWGC 3 cut(s) 178, 388, 483
Tsp45I GTSAC 2 cut(s) 148, 433
TspDTI ATGAA 2 cut(s) 581, 689
TspGWI ACGGA 1 cut(s) 188
TspRI CASTG 2 cut(s) 466, 482
Vha464I CTTAAG 1 cut(s) 760
VpaK11BI GGWCC 2 cut(s) 222, 247
XapI RAATTY 1 cut(s) 361
XspI CTAG 3 cut(s) 681, 770, 802
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.