Rmu_sc0001617.1_g000027

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001617.1
OG0025514
Physical Location & Seq
Reverse (-)
130828 .. 133590
2763 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 429 bp
atgatgaagaagatgaagctgaaggtcaaggaggagtccgcctccaatccgtcgggtacctcccaccgcgacgacgccgttagggtgaaagctggaataggggagggagcacttagaggcgtagaggtgagtgctctgttcagtcagaggaagaagagggttgctagctacaaggtgtacactgtggaggggaagctgaaagggactctcaggaagagcttccggtggctcaaggagacctgtgatagagtggtctatagccggtacaccaatgatcgactgagagatgaagaagatgaaggcacaccaatgatgaagaagatgaagctgaaggtcaagaaggagctttcaatgacaataccaaatcaactgatacttaggctttccagcaaaagcatgagtaccgccattggaggtgcttcaaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

142

Amino Acids

16.03

Weight (kDa)

10.17

Isoelectric Point (pI)

27.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3511 PF12023 49 - 86 8.4e-20 Domain of unknown function (DUF3511)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025514)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001617.1_g000027
rosa_roxburghii Rroxscaffold_1G00021200
rosa_samantha Rh2AG269600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 56
AccB1I GGYRCC 1 cut(s) 56
AccII CGCG 1 cut(s) 69
AciI CCGC 3 cut(s) 39, 67, 405
AcuI CTGAAG 2 cut(s) 41, 350
AcyI GRCGYC 1 cut(s) 75
AfaI GTAC 4 cut(s) 58, 179, 266, 403
AgsI TTSAA 2 cut(s) 351, 423
AluBI AGCT 7 cut(s) 19, 92, 168, 196, 219, 328, 346
AluI AGCT 7 cut(s) 19, 92, 168, 196, 219, 328, 346
Alw21I GWGCWC 2 cut(s) 112, 136
Alw26I GTCTC 1 cut(s) 230
Asp700I GAANNNNTTC 1 cut(s) 218
Asp718I GGTACC 1 cut(s) 56
AsuHPI GGTGA 2 cut(s) 97, 139
AsuNHI GCTAGC 1 cut(s) 164
BanI GGYRCC 1 cut(s) 56
Bbv12I GWGCWC 2 cut(s) 112, 136
BceAI ACGGC 1 cut(s) 62
BcoDI GTCTC 1 cut(s) 230
BfaI CTAG 1 cut(s) 165
BfmI CTRYAG 1 cut(s) 256
BmiI GGNNCC 1 cut(s) 58
BmtI GCTAGC 1 cut(s) 168
BplI GAGNNNNNCTC 2 cut(s) 26, 58
BpuEI CTTGAG 1 cut(s) 215
BsaHI GRCGYC 1 cut(s) 75
BsaI GGTCTC 1 cut(s) 230
BsaWI WCCGGW 1 cut(s) 222
Bse118I RCCGGY 1 cut(s) 261
BseMII CTCAG 2 cut(s) 223, 272
BseRI GAGGAG 1 cut(s) 47
Bsh1236I CGCG 1 cut(s) 69
BshNI GGYRCC 1 cut(s) 56
BsiHKAI GWGCWC 2 cut(s) 112, 136
BsiSI CCGG 2 cut(s) 223, 262
BslFI GGGAC 1 cut(s) 217
BsmAI GTCTC 1 cut(s) 230
BsmFI GGGAC 1 cut(s) 217
Bso31I GGTCTC 1 cut(s) 230
Bsp1286I GDGCHC 2 cut(s) 112, 136
Bsp1407I TGTACA 1 cut(s) 177
Bsp143I GATC 1 cut(s) 274
BspACI CCGC 3 cut(s) 39, 67, 405
BspCNI CTCAG 2 cut(s) 222, 273
BspFNI CGCG 1 cut(s) 69
BspLI GGNNCC 1 cut(s) 58
BspOI GCTAGC 1 cut(s) 168
BspQI GCTCTTC 1 cut(s) 209
BspT107I GGYRCC 1 cut(s) 56
BspTNI GGTCTC 1 cut(s) 230
BsrFI RCCGGY 1 cut(s) 261
BsrGI TGTACA 1 cut(s) 177
BssAI RCCGGY 1 cut(s) 261
BssMI GATC 1 cut(s) 274
BssNI GRCGYC 1 cut(s) 75
Bst4CI ACNGT 1 cut(s) 184
Bst6I CTCTTC 2 cut(s) 149, 209
BstACI GRCGYC 1 cut(s) 75
BstAUI TGTACA 1 cut(s) 177
BstC8I GCNNGC 1 cut(s) 166
BstDEI CTNAG 4 cut(s) 113, 209, 281, 377
BstFNI CGCG 1 cut(s) 69
BstKTI GATC 1 cut(s) 277
BstMAI GTCTC 1 cut(s) 230
BstMBI GATC 1 cut(s) 274
BstSFI CTRYAG 1 cut(s) 256
BstUI CGCG 1 cut(s) 69
BtsIMutI CAGTG 1 cut(s) 180
Cac8I GCNNGC 1 cut(s) 166
Cfr10I RCCGGY 1 cut(s) 261
CseI GACGC 1 cut(s) 83
Csp6I GTAC 4 cut(s) 57, 178, 265, 402
CviAII CATG 1 cut(s) 397
CviQI GTAC 4 cut(s) 57, 178, 265, 402
DdeI CTNAG 4 cut(s) 113, 209, 281, 377
DpnI GATC 1 cut(s) 276
DpnII GATC 1 cut(s) 274
Eam1104I CTCTTC 2 cut(s) 149, 209
EarI CTCTTC 2 cut(s) 149, 209
EciI GGCGGA 1 cut(s) 28
Eco31I GGTCTC 1 cut(s) 230
Eco57I CTGAAG 2 cut(s) 41, 350
FaeI CATG 1 cut(s) 400
FaiI YATR 2 cut(s) 258, 398
FaqI GGGAC 1 cut(s) 217
FatI CATG 1 cut(s) 396
FspBI CTAG 1 cut(s) 165
HapII CCGG 2 cut(s) 223, 262
HgaI GACGC 1 cut(s) 83
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 1 cut(s) 400
HinfI GANTC 2 cut(s) 35, 205
HpaII CCGG 2 cut(s) 223, 262
HphI GGTGA 2 cut(s) 97, 139
Hpy166II GTNNAC 3 cut(s) 178, 180, 267
Hpy188I TCNGA 1 cut(s) 147
Hpy188III TCNNGA 2 cut(s) 211, 337
Hpy8I GTNNAC 3 cut(s) 178, 180, 267
Hpy99I CGWCG 3 cut(s) 55, 74, 77
HpyAV CCTTC 4 cut(s) 16, 293, 325, 334
HpyCH4III ACNGT 1 cut(s) 184
HpyF3I CTNAG 4 cut(s) 113, 209, 281, 377
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 1 cut(s) 400
KpnI GGTACC 1 cut(s) 60
Kzo9I GATC 1 cut(s) 274
LguI GCTCTTC 1 cut(s) 209
LmnI GCTCC 2 cut(s) 107, 343
LpnPI CCDG 6 cut(s) 78, 196, 236, 253, 275, 400
MaeI CTAG 1 cut(s) 165
MalI GATC 1 cut(s) 276
MboI GATC 1 cut(s) 274
MboII GAAGA 9 cut(s) 19, 22, 163, 166, 226, 302, 305, 328, 331
MhlI GDGCHC 2 cut(s) 112, 136
MlyI GAGTC 2 cut(s) 44, 199
MroXI GAANNNNTTC 1 cut(s) 218
MslI CAYNNNNRTG 1 cut(s) 308
MspI CCGG 2 cut(s) 223, 262
MvnI CGCG 1 cut(s) 69
NdeII GATC 1 cut(s) 274
NheI GCTAGC 1 cut(s) 164
NlaIII CATG 1 cut(s) 400
NlaIV GGNNCC 1 cut(s) 58
PciSI GCTCTTC 1 cut(s) 209
PdmI GAANNNNTTC 1 cut(s) 218
PleI GAGTC 2 cut(s) 43, 199
PpsI GAGTC 2 cut(s) 43, 199
PspN4I GGNNCC 1 cut(s) 58
RsaI GTAC 4 cut(s) 58, 179, 266, 403
RsaNI GTAC 4 cut(s) 57, 178, 265, 402
RseI CAYNNNNRTG 1 cut(s) 308
SapI GCTCTTC 1 cut(s) 209
Sau3AI GATC 1 cut(s) 274
SchI GAGTC 2 cut(s) 44, 199
SduI GDGCHC 2 cut(s) 112, 136
SfcI CTRYAG 1 cut(s) 256
SmiMI CAYNNNNRTG 1 cut(s) 308
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
SsiI CCGC 3 cut(s) 39, 67, 405
SspMI CTAG 1 cut(s) 165
TaaI ACNGT 1 cut(s) 184
TaqI TCGA 1 cut(s) 277
TatI WGTACW 1 cut(s) 177
TscAI CASTG 1 cut(s) 187
TspDTI ATGAA 6 cut(s) 20, 29, 303, 312, 329, 338
TspGWI ACGGA 1 cut(s) 39
TspRI CASTG 1 cut(s) 187
XmnI GAANNNNTTC 1 cut(s) 218
XspI CTAG 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.